private void primitiveValue(Element item) throws IOException {
String type = item.getType();
if (Utilities.existsInList(type, "date", "dateTime", "instant")) {
String v = item.getValue();
if (v.length() > 10) {
int i = v.substring(10).indexOf("-");
if (i == -1) i = v.substring(10).indexOf("+");
v = i == -1 ? v : v.substring(0, 10 + i);
}
if (v.length() > 10) json.name("dateTime");
else if (v.length() == 10) json.name("date");
else if (v.length() == 7) json.name("gYearMonth");
else if (v.length() == 4) json.name("gYear");
json.value(item.getValue());
} else if (Utilities.existsInList(type, "boolean")) {
json.name("boolean");
json.value(item.getValue().equals("true") ? new Boolean(true) : new Boolean(false));
} else if (Utilities.existsInList(type, "integer", "unsignedInt", "positiveInt")) {
json.name("integer");
json.value(new Integer(item.getValue()));
} else if (Utilities.existsInList(type, "decimal")) {
json.name("decimal");
json.value(item.getValue());
} else if (Utilities.existsInList(type, "base64Binary")) {
json.name("binary");
json.value(item.getValue());
} else {
json.name("value");
json.value(item.getValue());
}
}
public String getEnhancedDefinition() {
if (isModifier() && getMustSupport())
return Utilities.removePeriod(getDefinition())
+ " (this element modifies the meaning of other elements, and must be supported)";
else if (isModifier())
return Utilities.removePeriod(getDefinition())
+ " (this element modifies the meaning of other elements)";
else if (getMustSupport())
return Utilities.removePeriod(getDefinition()) + " (this element must be supported)";
else return Utilities.removePeriod(getDefinition());
}
public String summary(FetchedResource r, boolean xml, boolean json, boolean ttl)
throws Exception {
// return "[--Summary goes here--]";
StringBuilder b = new StringBuilder();
b.append("<table class=\"grid\">\r\n");
b.append(
" <tbody><tr><td>Defining URL:</td><td>"
+ Utilities.escapeXml(map.getUrl())
+ "</td></tr>\r\n");
b.append(" <tr><td>Name:</td><td>" + Utilities.escapeXml(map.getName()) + "</td></tr>\r\n");
if (map.hasDescription())
b.append(
" <tr><td>Definition:</td><td>"
+ processMarkdown("description", map.getDescription())
+ "</td></tr>\r\n");
if (map.hasPublisher())
b.append(
" <tr><td>Publisher:</td><td>"
+ Utilities.escapeXml(map.getPublisher())
+ "</td></tr>\r\n");
if (map.hasCopyright())
b.append(
" <tr><td>Copyright:</td><td>"
+ Utilities.escapeXml(map.getCopyright())
+ "</td></tr>\r\n");
if (xml || json || ttl) {
b.append(" <tr><td>Source Resource</td><td>");
boolean first = true;
String filename = igp.getProperty(r, "format");
if (filename == null) filename = "ValueSet-" + r.getId() + ".{{[fmt]}}.html";
if (xml) {
first = false;
b.append("<a href=\"" + igp.doReplacements(filename, r, null, "xml") + "\">XML</a>");
}
if (json) {
if (first) first = false;
else b.append(" / ");
b.append("<a href=\"" + igp.doReplacements(filename, r, null, "json") + "\">JSON</a>");
}
if (ttl) {
if (first) first = false;
else b.append(" / ");
b.append("<a href=\"" + igp.doReplacements(filename, r, null, "ttl") + "\">Turtle</a>");
}
b.append("</td></tr>\r\n");
}
b.append("</tbody></table>\r\n");
return b.toString();
}
private String ref(BindingSpecification cd) {
if (!cd.hasReference()) return Utilities.escapeXml(cd.getDescription());
else if (cd.getValueSet() != null)
return "<a href=\""
+ cd.getReference()
+ ".html\">"
+ Utilities.escapeXml(cd.getValueSet().getName())
+ "</a>";
else
return "<a href=\""
+ cd.getReference()
+ "\">"
+ Utilities.escapeXml(cd.getDescription())
+ "</a>";
}
public void checkConditions(List<String> errors, Map<String, Long> dates) throws Exception {
Utilities.checkFolder(srcDir, errors);
Utilities.checkFolder(termDir, errors);
Utilities.checkFolder(imgDir, errors);
this.dates = dates;
checkFile("required", termDir, "bindings.xml", errors, "all");
checkFile("required", dtDir, "primitives.xml", errors, "all");
for (String n : ini.getPropertyNames("types"))
if (ini.getStringProperty("types", n).equals("")) {
TypeRef t = new TypeParser().parse(n).get(0);
checkFile("type definition", dtDir, t.getName().toLowerCase() + ".xml", errors, "all");
}
for (String n : ini.getPropertyNames("structures"))
checkFile("structure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
String[] shared = ini.getPropertyNames("shared");
if (shared != null)
for (String n : shared)
checkFile("shared structure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
for (String n : ini.getPropertyNames("infrastructure"))
checkFile("infrastructure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
for (String n : ini.getPropertyNames("resources")) {
if (!new File(srcDir + n).exists()) errors.add("unable to find folder for resource " + n);
else {
if (new CSFile(srcDir + n + File.separatorChar + n + "-spreadsheet.xml").exists()) {
checkFile(
"definition", srcDir + n + File.separatorChar, n + "-spreadsheet.xml", errors, n);
} else checkFile("definition", srcDir + n + File.separatorChar, n + "-def.xml", errors, n);
checkFile("example xml", srcDir + n + File.separatorChar, n + "-example.xml", errors, n);
// now iterate all the files in the directory checking data
for (String fn : new File(srcDir + n + File.separatorChar).list())
checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
}
}
for (String n : ini.getPropertyNames("special-resources")) {
if (new CSFile(srcDir + n + File.separatorChar + n + "-spreadsheet.xml").exists())
checkFile("definition", srcDir + n + File.separatorChar, n + "-spreadsheet.xml", errors, n);
else checkFile("definition", srcDir + n + File.separatorChar, n + "-def.xml", errors, n);
// now iterate all the files in the directory checking data
for (String fn : new File(srcDir + n + File.separatorChar).list())
checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
}
}
private static String compareElements(String path, Element e1, Element e2) {
if (!e1.getNamespaceURI().equals(e2.getNamespaceURI()))
return "Namespaces differ at "
+ path
+ ": "
+ e1.getNamespaceURI()
+ "/"
+ e2.getNamespaceURI();
if (!e1.getLocalName().equals(e2.getLocalName()))
return "Names differ at " + path + ": " + e1.getLocalName() + "/" + e2.getLocalName();
path = path + "/" + e1.getLocalName();
String s = compareAttributes(path, e1.getAttributes(), e2.getAttributes());
if (!Utilities.noString(s)) return s;
s = compareAttributes(path, e2.getAttributes(), e1.getAttributes());
if (!Utilities.noString(s)) return s;
Node c1 = e1.getFirstChild();
Node c2 = e2.getFirstChild();
c1 = skipBlankText(c1);
c2 = skipBlankText(c2);
while (c1 != null && c2 != null) {
if (c1.getNodeType() != c2.getNodeType())
return "node type mismatch in children of "
+ path
+ ": "
+ Integer.toString(e1.getNodeType())
+ "/"
+ Integer.toString(e2.getNodeType());
if (c1.getNodeType() == Node.TEXT_NODE) {
if (!normalise(c1.getTextContent()).equals(normalise(c2.getTextContent())))
return "Text differs at "
+ path
+ ": "
+ normalise(c1.getTextContent())
+ "/"
+ normalise(c2.getTextContent());
} else if (c1.getNodeType() == Node.ELEMENT_NODE) {
s = compareElements(path, (Element) c1, (Element) c2);
if (!Utilities.noString(s)) return s;
}
c1 = skipBlankText(c1.getNextSibling());
c2 = skipBlankText(c2.getNextSibling());
}
if (c1 != null) return "node mismatch - more nodes in source in children of " + path;
if (c2 != null) return "node mismatch - more nodes in target in children of " + path;
return null;
}
public static Operation fromCode(String name) {
if (Utilities.noString(name)) return null;
if (name.equals("=")) return Operation.Equals;
if (name.equals("~")) return Operation.Equivalent;
if (name.equals("!=")) return Operation.NotEquals;
if (name.equals("!~")) return Operation.NotEquivalent;
if (name.equals(">")) return Operation.Greater;
if (name.equals("<")) return Operation.LessThen;
if (name.equals(">=")) return Operation.GreaterOrEqual;
if (name.equals("<=")) return Operation.LessOrEqual;
if (name.equals("|")) return Operation.Union;
if (name.equals("or")) return Operation.Or;
if (name.equals("and")) return Operation.And;
if (name.equals("xor")) return Operation.Xor;
if (name.equals("is")) return Operation.Is;
if (name.equals("as")) return Operation.As;
if (name.equals("*")) return Operation.Times;
if (name.equals("/")) return Operation.DivideBy;
if (name.equals("+")) return Operation.Plus;
if (name.equals("-")) return Operation.Minus;
if (name.equals("&")) return Operation.Concatenate;
if (name.equals("implies")) return Operation.Implies;
if (name.equals("div")) return Operation.Div;
if (name.equals("mod")) return Operation.Mod;
if (name.equals("in")) return Operation.In;
if (name.equals("contains")) return Operation.Contains;
return null;
}
@Override
public void compose(Element e, OutputStream stream, OutputStyle style, String base)
throws Exception {
this.base = base;
OutputStreamWriter osw = new OutputStreamWriter(stream, "UTF-8");
if (style == OutputStyle.CANONICAL) json = new JsonCreatorCanonical(osw);
else json = new JsonCreatorGson(osw);
json.setIndent(style == OutputStyle.PRETTY ? " " : "");
json.beginObject();
prop("@type", "fhir:" + e.getType());
prop("@context", jsonLDBase + "fhir.jsonld");
prop("role", "fhir:treeRoot");
String id = e.getChildValue("id");
if (base != null && id != null) {
if (base.endsWith("#")) prop("@id", base + e.getType() + "-" + id + ">");
else prop("@id", Utilities.pathReverse(base, e.getType(), id));
}
Set<String> done = new HashSet<String>();
for (Element child : e.getChildren()) {
compose(e.getName(), e, done, child);
}
json.endObject();
json.finish();
osw.flush();
}
public void compose(IXMLWriter writer, AtomFeed feed, boolean htmlPretty) throws Exception {
this.htmlPretty = htmlPretty;
xml = writer;
xml.setDefaultNamespace(ATOM_NS);
xml.open(ATOM_NS, "feed");
if (feed.getTitle() != null) xml.element(ATOM_NS, "title", feed.getTitle());
if (feed.getId() != null) xml.element(ATOM_NS, "id", feed.getId());
for (String n : feed.getLinks().keySet()) {
xml.attribute("href", feed.getLinks().get(n));
xml.attribute("rel", n);
xml.element(ATOM_NS, "link", null);
}
if (feed.getTotalResults() != null) {
xml.setDefaultNamespace("http://purl.org/atompub/tombstones/1.0");
xml.element("totalResults", feed.getTotalResults().toString());
xml.setDefaultNamespace(ATOM_NS);
}
if (feed.getUpdated() != null) xml.element(ATOM_NS, "updated", feed.getUpdated().toString());
if (feed.getAuthorName() != null || feed.getAuthorUri() != null) {
xml.open(ATOM_NS, "author");
if (feed.getAuthorName() != null) xml.element(ATOM_NS, "name", feed.getAuthorName());
if (feed.getAuthorUri() != null) xml.element(ATOM_NS, "uri", feed.getAuthorUri());
xml.close(ATOM_NS, "author");
}
for (AtomCategory cat : feed.getTags()) {
xml.attribute("scheme", cat.getScheme());
xml.attribute("term", cat.getTerm());
if (!Utilities.noString(cat.getLabel())) xml.attribute("label", cat.getLabel());
xml.element("category", null);
}
for (AtomEntry<? extends Resource> e : feed.getEntryList()) composeEntry(e);
xml.close(ATOM_NS, "feed");
}
private String checkExists(List<Boolean> indents, boolean hasChildren) throws IOException {
String filename = makeName(indents);
StringBuilder b = new StringBuilder();
if (inLineGraphics) {
if (files.containsKey(filename)) return files.get(filename);
ByteArrayOutputStream bytes = new ByteArrayOutputStream();
genImage(indents, hasChildren, bytes);
b.append("data: image/png;base64,");
byte[] encodeBase64 = Base64.encodeBase64(bytes.toByteArray());
b.append(new String(encodeBase64));
files.put(filename, b.toString());
return b.toString();
} else {
b.append("tbl_bck");
for (Boolean i : indents) b.append(i ? "0" : "1");
if (hasChildren) b.append("1");
else b.append("0");
b.append(".png");
String file = Utilities.path(dest, b.toString());
if (!new File(file).exists()) {
FileOutputStream stream = new FileOutputStream(file);
genImage(indents, hasChildren, stream);
}
return b.toString();
}
}
private String getFormalName(Element element) {
String en = null;
if (element.getSpecial() == null) {
if (element.getProperty().getDefinition().hasBase())
en = element.getProperty().getDefinition().getBase().getPath();
} else if (element.getSpecial() == SpecialElement.BUNDLE_ENTRY) en = "Bundle.entry.resource";
else if (element.getSpecial() == SpecialElement.BUNDLE_OUTCOME)
en = "Bundle.entry.response.outcome";
else if (element.getSpecial() == SpecialElement.PARAMETER)
en = element.getElementProperty().getDefinition().getPath();
else // CONTAINED
en = "DomainResource.contained";
if (en == null) en = element.getProperty().getDefinition().getPath();
boolean doType = false;
if (en.endsWith("[x]")) {
en = en.substring(0, en.length() - 3);
doType = true;
}
if (doType
|| (element.getProperty().getDefinition().getType().size() > 1
&& !allReference(element.getProperty().getDefinition().getType())))
en = en + Utilities.capitalize(element.getType());
return en;
}
private static Node skipBlankText(Node node) {
while (node != null
&& (((node.getNodeType() == Node.TEXT_NODE)
&& Utilities.isWhitespace(node.getTextContent()))
|| (node.getNodeType() == Node.COMMENT_NODE))) node = node.getNextSibling();
return node;
}
/**
* @param value The human language of the content. The value can be any valid value according to
* BCP 47.
*/
public Attachment setLanguage(String value) {
if (Utilities.noString(value)) this.language = null;
else {
if (this.language == null) this.language = new CodeType();
this.language.setValue(value);
}
return this;
}
/**
* @param value A description of the substance - its appearance, handling requirements, and other
* usage notes.
*/
public Substance setDescription(String value) {
if (Utilities.noString(value)) this.description = null;
else {
if (this.description == null) this.description = new StringType();
this.description.setValue(value);
}
return this;
}
/** @param value Any comments related to the goal. */
public Goal setNotes(String value) {
if (Utilities.noString(value)) this.notes = null;
else {
if (this.notes == null) this.notes = new StringType();
this.notes.setValue(value);
}
return this;
}
/** @param value The note text. */
public ProcessResponseNotesComponent setText(String value) {
if (Utilities.noString(value)) this.text = null;
else {
if (this.text == null) this.text = new StringType();
this.text.setValue(value);
}
return this;
}
/** @param value The identification of the system that provides the coded form of the unit. */
public Quantity setSystem(String value) {
if (Utilities.noString(value)) this.system = null;
else {
if (this.system == null) this.system = new UriType();
this.system.setValue(value);
}
return this;
}
/**
* @param value This will either be a name or a description. E.g. "Aunt Susan", "my cousin with
* the red hair".
*/
public FamilyMemberHistory setName(String value) {
if (Utilities.noString(value)) this.name = null;
else {
if (this.name == null) this.name = new StringType();
this.name.setValue(value);
}
return this;
}
/** @param value An alternative location where the data can be accessed. */
public Attachment setUrl(String value) {
if (Utilities.noString(value)) this.url = null;
else {
if (this.url == null) this.url = new UriType();
this.url.setValue(value);
}
return this;
}
/** @param value A description of the status of the adjudication. */
public EnrollmentResponse setDisposition(String value) {
if (Utilities.noString(value)) this.disposition = null;
else {
if (this.disposition == null) this.disposition = new StringType();
this.disposition.setValue(value);
}
return this;
}
/** @param value A label or set of text to display in place of the data. */
public Attachment setTitle(String value) {
if (Utilities.noString(value)) this.title = null;
else {
if (this.title == null) this.title = new StringType();
this.title.setValue(value);
}
return this;
}
/** @param value A reference to supply which authenticates the process. */
public ProcessRequest setReference(String value) {
if (Utilities.noString(value)) this.reference = null;
else {
if (this.reference == null) this.reference = new StringType();
this.reference.setValue(value);
}
return this;
}
/** @param value A human-readable form of the unit. */
public Quantity setUnit(String value) {
if (Utilities.noString(value)) this.unit = null;
else {
if (this.unit == null) this.unit = new StringType();
this.unit.setValue(value);
}
return this;
}
/**
* @param value Additional diagnostic information about the issue. Typically, this may be a
* description of how a value is erroneous, or a stck dump to help trace the issue.
*/
public OperationOutcomeIssueComponent setDetails(String value) {
if (Utilities.noString(value)) this.details = null;
else {
if (this.details == null) this.details = new StringType();
this.details.setValue(value);
}
return this;
}
/** @param value A computer processable form of the unit in some unit representation system. */
public Quantity setCode(String value) {
if (Utilities.noString(value)) this.code = null;
else {
if (this.code == null) this.code = new CodeType();
this.code.setValue(value);
}
return this;
}
/** @param value Name of the care team. */
public CareTeam setName(String value) {
if (Utilities.noString(value)) this.name = null;
else {
if (this.name == null) this.name = new StringType();
this.name.setValue(value);
}
return this;
}
/** @param value An area where general notes can be placed about this specific condition. */
public FamilyMemberHistoryConditionComponent setNote(String value) {
if (Utilities.noString(value)) this.note = null;
else {
if (this.note == null) this.note = new StringType();
this.note.setValue(value);
}
return this;
}
/**
* @param value Identifies a style or collective of coverage issues by the underwriter, for
* example may be used to identify a class of coverage or employer group. May also be referred
* to as a Policy or Group ID.
*/
public Coverage setGroup(String value) {
if (Utilities.noString(value)) this.group = null;
else {
if (this.group == null) this.group = new StringType();
this.group.setValue(value);
}
return this;
}
/** @param value unique id for the element within a resource (for internal references). */
public Element setId(String value) {
if (Utilities.noString(value)) this.id = null;
else {
if (this.id == null) this.id = new IdType();
this.id.setValue(value);
}
return this;
}
/**
* @param value Identifies a sub-style or sub-collective of coverage issues by the underwriter,
* for example may be used to identify a specific employer group within a class of employers.
* May be referred to as a Section or Division ID.
*/
public Coverage setSubPlan(String value) {
if (Utilities.noString(value)) this.subPlan = null;
else {
if (this.subPlan == null) this.subPlan = new StringType();
this.subPlan.setValue(value);
}
return this;
}