private void processImport(Sheet sheet, int row) throws Exception {
PrimitiveType prim = new PrimitiveType();
prim.setCode(sheet.getColumn(row, "Data Type"));
prim.setDefinition(sheet.getColumn(row, "Definition"));
prim.setComment(sheet.getColumn(row, "Comments"));
prim.setSchemaType(sheet.getColumn(row, "Schema"));
prim.setRegEx(sheet.getColumn(row, "RegEx"));
TypeRef td = new TypeRef();
td.setName(prim.getCode());
definitions.getKnownTypes().add(td);
definitions.getPrimitives().put(prim.getCode(), prim);
}
private void loadCompartments() throws FileNotFoundException, Exception {
XLSXmlParser xml =
new XLSXmlParser(new CSFileInputStream(srcDir + "compartments.xml"), "compartments.xml");
Sheet sheet = xml.getSheets().get("compartments");
for (int row = 0; row < sheet.rows.size(); row++) {
Compartment c = new Compartment();
c.setName(sheet.getColumn(row, "Name"));
if (!c.getName().startsWith("!")) {
c.setTitle(sheet.getColumn(row, "Title"));
c.setDescription(sheet.getColumn(row, "Description"));
c.setIdentity(sheet.getColumn(row, "Identification"));
c.setMembership(sheet.getColumn(row, "Inclusion"));
definitions.getCompartments().add(c);
}
}
sheet = xml.getSheets().get("resources");
for (int row = 0; row < sheet.rows.size(); row++) {
String mn = sheet.getColumn(row, "Resource");
if (!mn.startsWith("!")) {
ResourceDefn r = definitions.getResourceByName(mn);
for (Compartment c : definitions.getCompartments()) {
c.getResources().put(r, sheet.getColumn(row, c.getName()));
}
}
}
}
private void loadStatusCodes() throws FileNotFoundException, Exception {
XLSXmlParser xml =
new XLSXmlParser(new CSFileInputStream(srcDir + "status-codes.xml"), "compartments.xml");
Sheet sheet = xml.getSheets().get("Status Codes");
for (int row = 0; row < sheet.rows.size(); row++) {
String path = sheet.getColumn(row, "Path");
ArrayList<String> codes = new ArrayList<String>();
for (int i = 1; i <= 80; i++) {
String s = sheet.getColumn(row, "c" + Integer.toString(i));
if (!Utilities.noString(s)) codes.add(s);
}
definitions.getStatusCodes().put(path, codes);
}
}
public boolean loadCodes(BindingSpecification cd) throws Exception {
// TODO Auto-generated method stub
Sheet sheet = xls.getSheets().get(cd.getReference().substring(1));
if (sheet == null) return false;
for (int row = 0; row < sheet.rows.size(); row++) {
DefinedCode c = new DefinedCode();
c.setId(sheet.getColumn(row, "Id"));
c.setCode(sheet.getColumn(row, "Code"));
c.setDisplay(sheet.getColumn(row, "Display"));
c.setSystem(sheet.getColumn(row, "System"));
c.setDefinition(sheet.getColumn(row, "Definition"));
c.setComment(sheet.getColumn(row, "Comment"));
c.setV2Map(sheet.getColumn(row, "v2"));
c.setV3Map(sheet.getColumn(row, "v3"));
cd.getCodes().add(c);
}
return true;
}
private void processLine(List<BindingSpecification> results, Sheet sheet, int row)
throws Exception {
BindingSpecification cd = new BindingSpecification();
cd.setName(sheet.getColumn(row, "Binding Name"));
if (!cd.getName().startsWith("!")) {
cd.setDefinition(sheet.getColumn(row, "Definition"));
cd.setBinding(readBinding(sheet.getColumn(row, "Binding")));
cd.setReference(sheet.getColumn(row, "Reference"));
if (!cd.getBinding().equals(Binding.Unbound) && Utilities.noString(cd.getReference()))
throw new Exception("binding " + cd.getName() + " is missing a reference");
cd.setDescription(sheet.getColumn(row, "Description"));
cd.setId(registry.idForName(cd.getName()));
cd.setSource(filename);
cd.setUri(sheet.getColumn(row, "Uri"));
cd.setOid(sheet.getColumn(row, "Oid"));
cd.setWebSite(sheet.getColumn(row, "Website"));
cd.setEmail(sheet.getColumn(row, "Email"));
cd.setV2Map(sheet.getColumn(row, "v2"));
cd.setV3Map(sheet.getColumn(row, "v3"));
results.add(cd);
}
}
private void processStringPattern(Sheet sheet, int row) throws Exception {
DefinedStringPattern prim = new DefinedStringPattern();
prim.setCode(sheet.getColumn(row, "Data Type"));
prim.setDefinition(sheet.getColumn(row, "Definition"));
prim.setComment(sheet.getColumn(row, "Comments"));
prim.setRegex(sheet.getColumn(row, "RegEx"));
prim.setSchema(sheet.getColumn(row, "Schema"));
prim.setBase(sheet.getColumn(row, "Base"));
TypeRef td = new TypeRef();
td.setName(prim.getCode());
definitions.getKnownTypes().add(td);
definitions.getPrimitives().put(prim.getCode(), prim);
}
private String loadCompositeType(String n, Map<String, ElementDefn> map) throws Exception {
TypeParser tp = new TypeParser();
List<TypeRef> ts = tp.parse(n);
definitions.getKnownTypes().addAll(ts);
try {
TypeRef t = ts.get(0);
File csv = new CSFile(dtDir + t.getName().toLowerCase() + ".xml");
if (csv.exists()) {
SpreadsheetParser p =
new SpreadsheetParser(
new CSFileInputStream(csv), csv.getName(), definitions, srcDir, logger, registry);
ElementDefn el = p.parseCompositeType();
map.put(t.getName(), el);
el.getAcceptableGenericTypes().addAll(ts.get(0).getParams());
return el.getName();
} else {
String p = ini.getStringProperty("types", n);
csv = new CSFile(dtDir + p.toLowerCase() + ".xml");
if (!csv.exists()) throw new Exception("unable to find a definition for " + n + " in " + p);
XLSXmlParser xls = new XLSXmlParser(new CSFileInputStream(csv), csv.getAbsolutePath());
Sheet sheet = xls.getSheets().get("Restrictions");
boolean found = false;
for (int i = 0; i < sheet.rows.size(); i++) {
if (sheet.getColumn(i, "Name").equals(n)) {
found = true;
Invariant inv = new Invariant();
inv.setId(n);
inv.setEnglish(sheet.getColumn(i, "Rules"));
inv.setOcl(sheet.getColumn(i, "OCL"));
inv.setXpath(sheet.getColumn(i, "XPath"));
definitions.getConstraints().put(n, new DefinedCode(n, sheet.getColumn(i, "Rules"), p));
definitions.getConstraintInvariants().put(n, inv);
}
}
if (!found) throw new Exception("Unable to find definition for " + n);
return n;
}
} catch (Exception e) {
throw new Exception("Unable to load " + n + ": " + e.getMessage(), e);
}
}