/**
* Only produce the v3 vocabulary for appending to rim.ttl
*
* @throws Exception
*/
public void executeV3(Map<String, ValueSet> valuesets, Map<String, CodeSystem> codeSystems)
throws Exception {
for (ValueSet vs : this.valuesets.values()) {
valuesets.put("vs:" + tail(vs.getUrl()), vs);
}
// for (String n : sorted(valuesets.keySet()))
// gen(n, valuesets.get(n));
commit(false);
}
private ValidationResult verifyCodeInExpansion(ValueSet vs, String code) throws FHIRException {
if (vs.getExpansion()
.hasExtension("http://hl7.org/fhir/StructureDefinition/valueset-toocostly")) {
throw new FHIRException("Unable to validate core - value set is too costly to expand");
} else {
ValueSetExpansionContainsComponent cc = findCode(vs.getExpansion().getContains(), code);
if (cc == null)
return new ValidationResult(
IssueSeverity.ERROR, "Unknown Code " + code + " in " + vs.getUrl());
return null;
}
}
private ValidationResult verifyCodeExternal(ValueSet vs, CodeableConcept cc, boolean tryCache)
throws Exception {
ValidationResult res = handleByCache(vs, cc, tryCache);
if (res != null) return res;
Parameters pin = new Parameters();
pin.addParameter().setName("codeableConcept").setValue(cc);
pin.addParameter().setName("valueSet").setResource(vs);
res = serverValidateCode(pin, false);
Map<String, ValidationResult> cache = validationCache.get(vs.getUrl());
cache.put(cacheId(cc), res);
return res;
}
private ValidationResult handleByCache(ValueSet vs, Coding coding, boolean tryCache) {
String cacheId = cacheId(coding);
Map<String, ValidationResult> cache = validationCache.get(vs.getUrl());
if (cache == null) {
cache = new HashMap<String, IWorkerContext.ValidationResult>();
validationCache.put(vs.getUrl(), cache);
}
if (cache.containsKey(cacheId)) return cache.get(cacheId);
if (!tryCache) return null;
if (!cacheValidation) return null;
if (failed.contains(vs.getUrl())) return null;
ValueSetExpansionOutcome vse = expandVS(vs, true, false);
if (vse.getValueset() == null || notcomplete(vse.getValueset())) {
failed.add(vs.getUrl());
return null;
}
ValidationResult res = validateCode(coding, vse.getValueset());
cache.put(cacheId, res);
return res;
}
private ValidationResult verifyCodeExternal(ValueSet vs, Coding coding, boolean tryCache)
throws Exception {
ValidationResult res = vs == null ? null : handleByCache(vs, coding, tryCache);
if (res != null) return res;
Parameters pin = new Parameters();
pin.addParameter().setName("coding").setValue(coding);
if (vs != null) pin.addParameter().setName("valueSet").setResource(vs);
res = serverValidateCode(pin, vs == null);
if (vs != null) {
Map<String, ValidationResult> cache = validationCache.get(vs.getUrl());
cache.put(cacheId(coding), res);
}
return res;
}
private ValidationResult verifyCodeInExpansion(
ValueSet vs, String system, String code, String display) {
ValueSetExpansionContainsComponent cc = findCode(vs.getExpansion().getContains(), code);
if (cc == null)
return new ValidationResult(
IssueSeverity.ERROR, "Unknown Code " + code + " in " + vs.getUrl());
if (display == null)
return new ValidationResult(
new ConceptDefinitionComponent().setCode(code).setDisplay(cc.getDisplay()));
if (cc.hasDisplay()) {
if (display.equalsIgnoreCase(cc.getDisplay()))
return new ValidationResult(
new ConceptDefinitionComponent().setCode(code).setDisplay(cc.getDisplay()));
return new ValidationResult(
IssueSeverity.WARNING,
"Display Name for " + code + " must be '" + cc.getDisplay() + "'",
new ConceptDefinitionComponent().setCode(code).setDisplay(cc.getDisplay()));
}
return null;
}
public ValueSetExpansionOutcome expandOnServer(ValueSet vs, String fn) throws Exception {
if (noTerminologyServer)
return new ValueSetExpansionOutcome(
"Error expanding ValueSet: running without terminology services",
TerminologyServiceErrorClass.NOSERVICE);
if (expProfile == null) throw new Exception("No ExpansionProfile provided");
try {
Map<String, String> params = new HashMap<String, String>();
params.put("_limit", Integer.toString(expandCodesLimit));
params.put("_incomplete", "true");
log("Terminology Server: $expand on " + getVSSummary(vs));
ValueSet result = txServer.expandValueset(vs, expProfile.setIncludeDefinition(false), params);
return new ValueSetExpansionOutcome(result);
} catch (Exception e) {
return new ValueSetExpansionOutcome(
"Error expanding ValueSet \"" + vs.getUrl() + ": " + e.getMessage(),
TerminologyServiceErrorClass.UNKNOWN);
}
}