/**
* See which items are possible to get the backup file from cloud.
*
* @param context DSpace context
* @param item iterator of items
* @return integer set with all the IDs Items that are possible to get the backup file from cloud
*/
public Set<Integer> checkPossibleItemsGet(Context context, ItemIterator items) {
// This will contain all the Items IDs that backup files could be get from cloud
Set<Integer> setInfo = new HashSet<Integer>();
try {
// if exist some item to evaluate make the connection and
// get items backups files in cloud
if (items.hasNext() == true) {
this.makeConnection();
this.filesInCloud.putAll(this.newCloudConnection.getInfoFilesIn(Constants.ITEM));
}
// do the operation for all items
while (items.hasNext() == true) {
Item objItem = items.next();
// check if it is possible and necessary to get a backup file from cloud
Boolean checkCorrect = this.couldGetFileFromCloud(context, objItem.getID(), Constants.ITEM);
// add the ID collection to set if correct
if (checkCorrect == true) setInfo.add(objItem.getID());
}
// close the connection to cloud
this.closeConnection();
} catch (SQLException ex) {
Logger.getLogger(ActualContentManagement.class.getName()).log(Level.SEVERE, null, ex);
}
return setInfo;
}
/* (non-Javadoc)
* @see org.dspace.app.dav.DAVResource#children()
*/
@Override
protected DAVResource[] children() throws SQLException {
Vector result = new Vector();
ItemIterator ii = this.collection.getItems();
while (ii.hasNext()) {
Item item = ii.next();
result.add(new DAVItem(this.context, this.request, this.response, makeChildPath(item), item));
}
return (DAVResource[]) result.toArray(new DAVResource[result.size()]);
}
/**
* Send a collection backup file and respective children to cloud to be preserved.
*
* @param context context DSpace
* @param ref ID of the collection
* @param establishConnection true if pretend establish connection to cloud
* @return true if file correctly sent to cloud, or false if not
*/
public Boolean sendCollectionAndChilds(
Context context, Integer ref, Boolean establishConnection) {
// if first, make connection and get collection and item files preserved in cloud
if (establishConnection == true) {
this.makeConnection();
this.filesInCloud.putAll(this.newCloudConnection.getInfoFilesIn(Constants.COLLECTION));
this.filesInCloud.putAll(this.newCloudConnection.getInfoFilesIn(Constants.ITEM));
}
// send to cloud atual collection
sendCollection(context, ref, false);
Collection obj;
ItemIterator items;
// get the items presents in the collection
try {
obj = Collection.find(context, ref);
items = obj.getAllItems();
} catch (Exception ex) {
Logger.getLogger(ActualContentManagement.class.getName()).log(Level.SEVERE, null, ex);
// it means it is the first father in the order, so close connection
if (establishConnection == true) this.closeConnection();
return false;
}
// send to cloud, one by one, each item
try {
if (items.hasNext()) {
Item newObj = items.next();
sendItem(context, newObj.getID(), false);
}
} catch (Exception ex) {
Logger.getLogger(ActualContentManagement.class.getName()).log(Level.SEVERE, null, ex);
// it means it is the first father in the order, so close connection
if (establishConnection == true) this.closeConnection();
return false;
}
// it means it is the first father in the order
if (establishConnection == true) this.closeConnection();
return true;
}
/**
* @param args
* @throws SQLException
* @throws IOException
* @throws AuthorizeException
*/
public static void main(String[] args) throws SQLException, AuthorizeException, IOException {
Context ctx = new Context();
ctx.setIgnoreAuthorization(true);
ItemIterator iter = Item.findAll(ctx);
Properties props = new Properties();
File processed = new File("license.processed");
if (processed.exists()) props.load(new FileInputStream(processed));
int i = 0;
try {
while (iter.hasNext()) {
if (i == 100) {
props.store(
new FileOutputStream(processed),
"processed license files, remove to restart processing from scratch");
i = 0;
}
Item item = (Item) iter.next();
log.info("checking: " + item.getID());
if (!props.containsKey("I" + item.getID())) {
handleItem(item);
log.info("processed: " + item.getID());
}
item.decache();
props.put("I" + item.getID(), "done");
i++;
}
} finally {
props.store(
new FileOutputStream(processed),
"processed license files, remove to restart processing from scratch");
}
}
/**
* Handles the model processing required for the submissions page. - Workflow tasks owned by user
* - Workflow tasks available in pool - Unfinished submissions - Archived submissions
*
* <p>TODO: Need to perform auth check
*/
@RequestMapping("/submissions/**")
protected String displaySubmissions(
@RequestAttribute Context context, ModelMap model, HttpServletRequest request)
throws Exception {
List<WorkflowItem> ownedItems =
WorkflowManager.getOwnedTasks(context, context.getCurrentUser());
model.addAttribute("ownedItems", ownedItems);
List<WorkflowItem> pooledItems =
WorkflowManager.getPooledTasks(context, context.getCurrentUser());
model.addAttribute("pooledItems", pooledItems);
WorkspaceItem[] unfinishedItems =
WorkspaceItem.findByEPerson(context, context.getCurrentUser());
model.addAttribute("unfinishedItems", unfinishedItems);
SupervisedItem[] supervisedItems =
SupervisedItem.findbyEPerson(context, context.getCurrentUser());
model.addAttribute("supervisedItems", supervisedItems);
WorkflowItem[] inprogressItems = WorkflowItem.findByEPerson(context, context.getCurrentUser());
model.addAttribute("inprogressItems", inprogressItems);
ItemIterator submittedItemsIterator = Item.findBySubmitter(context, context.getCurrentUser());
// Converting ItemIterator into something easier to digest
List<Item> submittedItems = new LinkedList<Item>();
try {
while (submittedItemsIterator.hasNext()) {
submittedItems.add(submittedItemsIterator.next());
}
} finally {
if (submittedItemsIterator != null) {
submittedItemsIterator.close();
}
}
model.addAttribute("submittedItems", submittedItems);
return "pages/submissions";
}
/**
* Purge the collection of all items, then run a fresh harvest cycle.
*
* @param context The current DSpace context.
* @param collectionID The collection id.
* @param request the Cocoon request object
* @return A process result's object.
* @throws TransformerException
* @throws SAXException
* @throws ParserConfigurationException
* @throws CrosswalkException
* @throws BrowseException
*/
public static FlowResult processReimportCollection(
Context context, int collectionID, Request request)
throws SQLException, IOException, AuthorizeException, CrosswalkException,
ParserConfigurationException, SAXException, TransformerException, BrowseException {
Collection collection = Collection.find(context, collectionID);
HarvestedCollection hc = HarvestedCollection.find(context, collectionID);
ItemIterator it = collection.getAllItems();
// IndexBrowse ib = new IndexBrowse(context);
while (it.hasNext()) {
Item item = it.next();
// System.out.println("Deleting: " + item.getHandle());
// ib.itemRemoved(item);
collection.removeItem(item);
}
hc.setHarvestResult(null, "");
hc.update();
collection.update();
context.commit();
return processRunCollectionHarvest(context, collectionID, request);
}
public static void applyFiltersCollection(Context c, Collection collection) throws Exception {
ItemIterator i = collection.getItems();
while (i.hasNext() && processed < max2Process) {
applyFiltersItem(c, i.next());
}
}
public static void applyFiltersAllItems(Context c) throws Exception {
ItemIterator i = Item.findAll(c);
while (i.hasNext() && processed < max2Process) {
applyFiltersItem(c, i.next());
}
}
/**
* Get a list of all the items that the current SWORD context will allow deposit onto in the given
* DSpace context
*
* <p>IF: the authenticated user is an administrator AND: (the on-behalf-of user is an
* administrator OR the on-behalf-of user is authorised to WRITE on the item and ADD on the
* ORIGINAL bundle OR the on-behalf-of user is null) OR IF: the authenticated user is authorised
* to WRITE on the item and ADD on the ORIGINAL bundle AND: (the on-behalf-of user is an
* administrator OR the on-behalf-of user is authorised to WRITE on the item and ADD on the
* ORIGINAL bundle OR the on-behalf-of user is null)
*
* @param swordContext
* @return the array of allowed collections
* @throws DSpaceSwordException
*/
public List<Item> getAllowedItems(
SwordContext swordContext, org.dspace.content.Collection collection)
throws DSpaceSwordException {
// an item is allowed if the following conditions are met
//
// - the authenticated user is an administrator
// -- the on-behalf-of user is an administrator
// -- the on-behalf-of user is authorised to WRITE on the item and ADD on the ORIGINAL bundle
// -- the on-behalf-of user is null
// - the authenticated user is authorised to WRITE on the item and ADD on the ORIGINAL bundle
// -- the on-behalf-of user is an administrator
// -- the on-behalf-of user is authorised to WRITE on the item and ADD on the ORIGINAL bundle
// -- the on-behalf-of user is null
try {
List<Item> allowed = new ArrayList<Item>();
ItemIterator ii = collection.getItems();
while (ii.hasNext()) {
Item item = ii.next();
boolean authAllowed = false;
boolean oboAllowed = false;
// check for obo null
if (swordContext.getOnBehalfOf() == null) {
oboAllowed = true;
}
// get the "ORIGINAL" bundle(s)
Bundle[] bundles = item.getBundles("ORIGINAL");
// look up the READ policy on the community. This will include determining if the user is
// an administrator
// so we do not need to check that separately
if (!authAllowed) {
boolean write =
AuthorizeManager.authorizeActionBoolean(
swordContext.getAuthenticatorContext(), item, Constants.WRITE);
boolean add = false;
if (bundles.length == 0) {
add =
AuthorizeManager.authorizeActionBoolean(
swordContext.getAuthenticatorContext(), item, Constants.ADD);
} else {
for (int i = 0; i < bundles.length; i++) {
add =
AuthorizeManager.authorizeActionBoolean(
swordContext.getAuthenticatorContext(), bundles[i], Constants.ADD);
if (!add) {
break;
}
}
}
authAllowed = write && add;
}
// if we have not already determined that the obo user is ok to submit, look up the READ
// policy on the
// community. THis will include determining if the user is an administrator.
if (!oboAllowed) {
boolean write =
AuthorizeManager.authorizeActionBoolean(
swordContext.getOnBehalfOfContext(), item, Constants.WRITE);
boolean add = false;
if (bundles.length == 0) {
add =
AuthorizeManager.authorizeActionBoolean(
swordContext.getAuthenticatorContext(), item, Constants.ADD);
} else {
for (int i = 0; i < bundles.length; i++) {
add =
AuthorizeManager.authorizeActionBoolean(
swordContext.getAuthenticatorContext(), bundles[i], Constants.ADD);
if (!add) {
break;
}
}
}
oboAllowed = write && add;
}
// final check to see if we are allowed to READ
if (authAllowed && oboAllowed) {
allowed.add(item);
}
}
return allowed;
} catch (SQLException e) {
throw new DSpaceSwordException(e);
}
}
/**
* Delete item in collection.
*
* @param collectionId Id of collection which will be deleted.
* @param itemId Id of item in colletion.
* @return It returns status code: OK(200). NOT_FOUND(404) if item or collection was not found,
* UNAUTHORIZED(401) if user is not allowed to delete item or permission to write into
* collection.
* @throws WebApplicationException It can be thrown by: SQLException, when was problem with
* database reading or writting. AuthorizeException, when was problem with authorization to
* item or collection. IOException, when was problem with removing item. ContextException,
* when was problem with creating context of DSpace.
*/
@DELETE
@Path("/{collection_id}/items/{item_id}")
@Consumes({MediaType.APPLICATION_JSON, MediaType.APPLICATION_XML})
public Response deleteCollectionItem(
@PathParam("collection_id") Integer collectionId,
@PathParam("item_id") Integer itemId,
@QueryParam("userIP") String user_ip,
@QueryParam("userAgent") String user_agent,
@QueryParam("xforwarderfor") String xforwarderfor,
@Context HttpHeaders headers,
@Context HttpServletRequest request)
throws WebApplicationException {
log.info("Delete item(id=" + itemId + ") in collection(id=" + collectionId + ").");
org.dspace.core.Context context = null;
try {
context = createContext(getUser(headers));
org.dspace.content.Collection dspaceCollection =
findCollection(context, collectionId, org.dspace.core.Constants.WRITE);
org.dspace.content.Item item = null;
org.dspace.content.ItemIterator dspaceItems = dspaceCollection.getItems();
while (dspaceItems.hasNext()) {
org.dspace.content.Item dspaceItem = dspaceItems.next();
if (dspaceItem.getID() == itemId) {
item = dspaceItem;
}
}
if (item == null) {
context.abort();
log.warn("Item(id=" + itemId + ") was not found!");
throw new WebApplicationException(Response.Status.NOT_FOUND);
} else if (!AuthorizeManager.authorizeActionBoolean(
context, item, org.dspace.core.Constants.REMOVE)) {
context.abort();
if (context.getCurrentUser() != null) {
log.error(
"User("
+ context.getCurrentUser().getEmail()
+ ") has not permission to delete item!");
} else {
log.error("User(anonymous) has not permission to delete item!");
}
throw new WebApplicationException(Response.Status.UNAUTHORIZED);
}
writeStats(
dspaceCollection,
UsageEvent.Action.UPDATE,
user_ip,
user_agent,
xforwarderfor,
headers,
request,
context);
writeStats(
item,
UsageEvent.Action.REMOVE,
user_ip,
user_agent,
xforwarderfor,
headers,
request,
context);
dspaceCollection.removeItem(item);
context.complete();
} catch (ContextException e) {
processException(
"Could not delete item(id="
+ itemId
+ ") in collection(id="
+ collectionId
+ "), ContextException. Message: "
+ e.getMessage(),
context);
} catch (SQLException e) {
processException(
"Could not delete item(id="
+ itemId
+ ") in collection(id="
+ collectionId
+ "), SQLException. Message: "
+ e,
context);
} catch (AuthorizeException e) {
processException(
"Could not delete item(id="
+ itemId
+ ") in collection(id="
+ collectionId
+ "), AuthorizeException. Message: "
+ e,
context);
} catch (IOException e) {
processException(
"Could not delete item(id="
+ itemId
+ ") in collection(id="
+ collectionId
+ "), IOException. Message: "
+ e,
context);
} finally {
processFinally(context);
}
log.info(
"Item(id=" + itemId + ") in collection(id=" + collectionId + ") was successfully deleted.");
return Response.ok().build();
}
/**
* Return array of items in collection. You can add more properties to items with expand
* parameter.
*
* @param collectionId Id of collection in DSpace.
* @param expand String which define, what additional properties will be in returned item. Options
* are separeted by commas and are: "all", "metadata", "parentCollection",
* "parentCollectionList", "parentCommunityList" and "bitstreams".
* @param limit Limit value for items in array. Default value is 100.
* @param offset Offset of start index in array of items of collection. Default value is 0.
* @param headers If you want to access to collection under logged user into context. In headers
* must be set header "rest-dspace-token" with passed token from login method.
* @return Return array of items, on which has logged user permission to read. It can also return
* status code NOT_FOUND(404) if id of collection is incorrect or status code UNATHORIZED(401)
* if user has no permission to read collection.
* @throws WebApplicationException It is thrown when was problem with database reading
* (SQLException) or problem with creating context(ContextException). It is thrown by
* NOT_FOUND and UNATHORIZED status codes, too.
*/
@GET
@Path("/{collection_id}/items")
@Produces({MediaType.APPLICATION_JSON, MediaType.APPLICATION_XML})
public org.dspace.rest.common.Item[] getCollectionItems(
@PathParam("collection_id") Integer collectionId,
@QueryParam("expand") String expand,
@QueryParam("limit") @DefaultValue("100") Integer limit,
@QueryParam("offset") @DefaultValue("0") Integer offset,
@QueryParam("userIP") String user_ip,
@QueryParam("userAgent") String user_agent,
@QueryParam("xforwarderfor") String xforwarderfor,
@Context HttpHeaders headers,
@Context HttpServletRequest request)
throws WebApplicationException {
log.info("Reading collection(id=" + collectionId + ") items.");
org.dspace.core.Context context = null;
List<Item> items = null;
try {
context = createContext(getUser(headers));
org.dspace.content.Collection dspaceCollection =
findCollection(context, collectionId, org.dspace.core.Constants.READ);
writeStats(
dspaceCollection,
UsageEvent.Action.VIEW,
user_ip,
user_agent,
xforwarderfor,
headers,
request,
context);
items = new ArrayList<Item>();
org.dspace.content.ItemIterator dspaceItems = dspaceCollection.getItems();
for (int i = 0; (dspaceItems.hasNext()) && (i < (limit + offset)); i++) {
if (i >= offset) {
org.dspace.content.Item dspaceItem = dspaceItems.next();
if (AuthorizeManager.authorizeActionBoolean(
context, dspaceItem, org.dspace.core.Constants.READ)) {
items.add(new Item(dspaceItem, expand, context));
writeStats(
dspaceItem,
UsageEvent.Action.VIEW,
user_ip,
user_agent,
xforwarderfor,
headers,
request,
context);
}
}
}
context.complete();
} catch (SQLException e) {
processException("Could not read collection items, SQLException. Message: " + e, context);
} catch (ContextException e) {
processException(
"Could not read collection items, ContextException. Message: " + e.getMessage(), context);
} finally {
processFinally(context);
}
log.trace("All items in collection(id=" + collectionId + ") were successfully read.");
return items.toArray(new Item[0]);
}