@RequestMapping(value = "/UgeneMatrix", method = RequestMethod.POST)
public String getUgeneMatrixObservations(
@Valid @ModelAttribute("feMatrixForm") FEMatrixform feUgeneForm,
BindingResult result,
Model model) {
if (result.hasErrors()) {
return "UgeneMatrix";
}
assert (jobSearchService != null);
User user = (User) SecurityContextHolder.getContext().getAuthentication().getPrincipal();
assert (user != null);
List<JobSearchParameter> searchParameters = new ArrayList<JobSearchParameter>(9);
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.CLASSPROPERTY.getSearchKey(), feUgeneForm.getClassProperty(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.CLASSTIME.getSearchKey(), feUgeneForm.getClassTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.STARTDATE.getSearchKey(), feUgeneForm.getStartDate(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.ENDDATE.getSearchKey(), feUgeneForm.getEndDate(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.STARTTIME.getSearchKey(), feUgeneForm.getStartTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.ENDTIME.getSearchKey(), feUgeneForm.getEndTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.NOCLASSPROPERTYFEATURE.getSearchKey(),
feUgeneForm.getNoCPFeatures(),
1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.UGENETYPE.getSearchKey(), feUgeneForm.getUgeneAlgorithm(), 1));
JobSearch jobSearch = new JobSearch();
jobSearch.setSearchBy(user.getId());
jobSearch.setSearchParameters(searchParameters);
JobSearchDetails jobSearchDetails = new JobSearchDetails();
jobSearchDetails.setSearchOn(SearchOn.UGENEMATRIX.getSearchOn());
jobSearchDetails.setSearchType("UGENEMATRIX");
jobSearchDetails.setSearchParameters(jobSearch.getSearchParameters().get(0).getValue());
jobSearchDetails.setScriptType(SearchScript.UGENEMATRIX.getSearchScript());
jobSearchDetails.setScriptParameters(jobSearchService.getScriptParameters(jobSearch));
jobSearchService.searchJob(jobSearch, jobSearchDetails);
return "redirect:/MySearch/";
}
@RequestMapping(value = "/DownloadUgeneReport/{id}", method = RequestMethod.GET)
public void doDownload(
@PathVariable("id") String reportID, HttpServletRequest request, HttpServletResponse response)
throws IOException {
String fileName = "feUgeneReport" + reportID + ".tar.gz";
String fullPath =
jobSearchService.getAppDataDirectory()
+ File.separator
+ "ugene"
+ File.separator
+ "output"
+ File.separator
+ fileName;
File downloadFile = new File(fullPath);
FileInputStream inputStream = new FileInputStream(downloadFile);
String mimeType = servletContext.getMimeType(fullPath);
if (mimeType == null) {
// set to binary type if MIME mapping not found
mimeType = "application/octet-stream";
}
response.setContentType(mimeType);
response.setContentLength((int) downloadFile.length());
String headerKey = "Content-Disposition";
String headerValue = String.format("attachment; filename=\"%s\"", downloadFile.getName());
response.setHeader(headerKey, headerValue);
OutputStream outStream = response.getOutputStream();
byte[] buffer = new byte[BUFFER_SIZE];
int bytesRead = -1;
while ((bytesRead = inputStream.read(buffer)) != -1) {
outStream.write(buffer, 0, bytesRead);
}
inputStream.close();
outStream.close();
}
@RequestMapping(value = "/ML-FLEX", method = RequestMethod.POST)
public String getMlFlexObservations(
@Valid @ModelAttribute("mlflexForm") FEMlFlexForm mlflexform,
BindingResult result,
Model model) {
if (result.hasErrors()) {
return "FEMLFlex";
}
assert (jobSearchService != null);
User user = (User) SecurityContextHolder.getContext().getAuthentication().getPrincipal();
assert (user != null);
List<JobSearchParameter> searchParameters = new ArrayList<JobSearchParameter>(9);
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.CLASSPROPERTY.getSearchKey(), mlflexform.getClassProperty(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.CLASSIFIER.getSearchKey(),
mlflexform.getClassificationAlgorithm(),
1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.FOLDS.getSearchKey(), mlflexform.getFolds().toString(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.NoITERATIONS.getSearchKey(),
mlflexform.getNumberOfIterations().toString(),
1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.CLASSTIME.getSearchKey(), mlflexform.getClassTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.STARTDATE.getSearchKey(), mlflexform.getStartDate(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.ENDDATE.getSearchKey(), mlflexform.getEndDate(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.STARTTIME.getSearchKey(), mlflexform.getStartTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.ENDTIME.getSearchKey(), mlflexform.getEndTime(), 1));
searchParameters.add(
new JobSearchParameter(
JobSearchConstants.NOCLASSPROPERTYFEATURE.getSearchKey(),
mlflexform.getNoCPFeatures(),
1));
JobSearch jobSearch = new JobSearch();
jobSearch.setSearchBy(user.getId());
jobSearch.setSearchParameters(searchParameters);
JobSearchDetails jobSearchDetails = new JobSearchDetails();
jobSearchDetails.setSearchOn(SearchOn.FEMLFLEX.getSearchOn());
jobSearchDetails.setSearchType("FEMlFlex");
jobSearchDetails.setSearchParameters(jobSearch.getSearchParameters().get(0).getValue());
jobSearchDetails.setScriptType(SearchScript.FEMLFLEX.getSearchScript());
jobSearchDetails.setScriptParameters(jobSearchService.getScriptParameters(jobSearch));
jobSearchService.searchJob(jobSearch, jobSearchDetails);
return "redirect:/MySearch/";
}