/**
* @param interactions
* @return
*/
private String toPigeon(Set<Interaction> interactions) {
StringBuilder sb = new StringBuilder();
sb.append("# Arcs").append("\r\n");
if (null != interactions && !(interactions.isEmpty())) {
Iterator<Interaction> it = interactions.iterator();
while (it.hasNext()) {
Interaction ia = it.next();
if (InteractionType.REPRESSES == ia.getType()) {
sb.append(toPigeonRep(ia));
} else if (InteractionType.INDUCES == ia.getType()) {
sb.append(toPigeonInd(ia));
}
sb.append("\r\n");
}
}
return sb.toString();
}
/*
* REPRESSES -> REP
*/
private String toPigeonInd(Interaction induces) {
StringBuilder sb = new StringBuilder();
// get the individual roles
String inducer = null;
String inducee = null;
for (Participation part : induces.getParticipations()) {
if (Participation.Role.INDUCER == part.getRole()) {
inducer = part.getParticipant().getName();
} else if (Participation.Role.INDUCEE == part.getRole()) {
inducee = part.getParticipant().getName();
}
}
// finally, we build the Pigeon statement
sb.append(inducer);
sb.append(" ing ");
sb.append(inducee);
return sb.toString();
}
/*
* REPRESSES -> REP
*/
private String toPigeonRep(Interaction represses) {
StringBuilder sb = new StringBuilder();
// get the individual roles
String repressor = null;
String repressee = null;
for (Participation part : represses.getParticipations()) {
if (Participation.Role.REPRESSOR == part.getRole()) {
repressor = part.getParticipant().getName();
} else if (Participation.Role.REPRESSEE == part.getRole()) {
repressee = part.getParticipant().getName();
}
}
// finally, we build the Pigeon statement
sb.append(repressor);
sb.append(" rep ");
sb.append(repressee);
return sb.toString();
}