public CurationSet getCurationSet() throws apollo.dataadapter.ApolloAdapterException {
GbrowseAdapterGUI gui = (GbrowseAdapterGUI) getUI(ApolloDataAdapterI.OP_READ_DATA);
String chr = gui.getSelectedChr();
int chrstart = Integer.parseInt(gui.getSelectedStart());
int chrend = Integer.parseInt(gui.getSelectedEnd());
mysql = new MySQLInstance(host, user, pass, port);
db = mysql.fetchDatabaseByName(dbname);
dba = new DBAdaptor(db);
FeatureAdaptor fa = dba.getFeatureAdaptor();
FeatureSetI f = fa.fetchByReferenceStartEnd(chr, chrstart, chrend);
super.clearOldData();
CurationSet curationSet = new CurationSet();
curationSet.setChromosome(chr);
curationSet.setLow(chrstart);
curationSet.setHigh(chrend);
curationSet.setStrand(0);
StrandedFeatureSet sfset = new StrandedFeatureSet(new FeatureSet(), new FeatureSet());
for (int i = 0; i < f.size(); i++) {
SeqFeatureI sf = f.getFeatureAt(i);
sfset.addFeature(sf);
}
curationSet.setResults(sfset);
curationSet.setAnnots(new StrandedFeatureSet(new FeatureSet(), new FeatureSet()));
curationSet.setName(chr + "." + chrstart + "-" + chrend);
// super.notifyLoadingDone();
return curationSet;
}
public String getTitle(CurationSet curation) {
if (curation.getChildCurationSets().size() <= 0) return curation.toString();
else return "composite";
}