/**
* Adds a GAMSO activity to the Jena model.
*
* @param activityNumber An array of integers with the components of the activity code.
* @param activityLabel The label of the activity as read from the Word document.
* @param activityDescription The components of the activity description (a <code>List</code> of
* strings).
*/
private void addActivityToModel(
int[] activityNumber, String activityLabel, List<String> activityDescription) {
String code = String.format("%d", activityNumber[0]);
if (activityNumber[1] > 0) code += String.format(".%d", activityNumber[1]);
if (activityNumber[2] > 0) code += String.format(".%d", activityNumber[2]);
String parentCode = getParentCode(code);
logger.debug("Adding activity " + code + " - " + activityLabel);
Resource gamsoConcept = gamsoModel.createResource(GAMSO_BASE_URI + code, SKOS.Concept);
gamsoConcept.addProperty(RDF.type, CSPAOnto.GAMSOActivity);
gamsoConcept.addProperty(SKOS.notation, code);
gamsoConcept.addProperty(SKOS.prefLabel, gamsoModel.createLiteral(activityLabel, "en"));
gamsoConcept.addProperty(SKOS.inScheme, gamsoCS);
if (parentCode == null) {
gamsoCS.addProperty(SKOS.hasTopConcept, gamsoConcept);
gamsoConcept.addProperty(SKOS.topConceptOf, gamsoCS);
} else {
Resource parentConcept = gamsoModel.createResource(GAMSO_BASE_URI + parentCode);
parentConcept.addProperty(SKOS.narrower, gamsoConcept);
gamsoConcept.addProperty(SKOS.broader, parentConcept);
}
}
public static void main(String[] args) {
// create an empty model
Model model = ModelFactory.createDefaultModel();
// use the FileManager to find the input file
String inputFileName = "src/main/resources/lab-3.ttl";
InputStream in = FileManager.get().open(inputFileName);
if (in == null) {
throw new IllegalArgumentException("File: " + inputFileName + " not found");
}
// read the Turtle file
model.read(in, null, "TTL");
// get the inferred mode
/* The getDeductionsFunction somehow returns the incorrect answer, so I have to use the deprecated class 'Filter'. */
InfModel infModel = ModelFactory.createRDFSModel(model);
ExtendedIterator<Statement> stmts =
infModel
.listStatements()
.filterDrop(
new Filter<Statement>() {
@Override
public boolean accept(Statement o) {
return model.contains(o);
}
});
Model deductionsModel = ModelFactory.createDefaultModel().add(new StmtIteratorImpl(stmts));
// list new RDFS-inferred triples about 'Museion'
outputInfo(deductionsModel, "museion");
// list new RDFS-inferred triples about 'Chicken Hut'
outputInfo(deductionsModel, "chickenHut");
}
@Test
public void test1() throws Exception {
InputStream fis = getClass().getResourceAsStream("../mappingFiles/test5.ttl");
JenaR2RMLMappingManager mm = JenaR2RMLMappingManager.getInstance();
Model m = ModelFactory.createDefaultModel();
m = m.read(fis, "testMapping", "TURTLE");
Collection<TriplesMap> coll = mm.importMappings(m);
Assert.assertTrue(coll.size() == 1);
Iterator<TriplesMap> it = coll.iterator();
while (it.hasNext()) {
TriplesMap current = it.next();
SubjectMap s = current.getSubjectMap();
Template t = s.getTemplate();
Assert.assertTrue(t.getColumnName(0).contains("EMPNO"));
LogicalTable table = current.getLogicalTable();
SQLBaseTableOrViewImpl ta = (SQLBaseTableOrViewImpl) table;
Assert.assertTrue(ta.getTableName().contains("EMP2DEPT"));
}
}
@Test
public void test() throws Exception {
InputStream fis = getClass().getResourceAsStream("../mappingFiles/test17.ttl");
JenaR2RMLMappingManager mm = JenaR2RMLMappingManager.getInstance();
Model m = ModelFactory.createDefaultModel();
m = m.read(fis, "testMapping", "TURTLE");
Collection<TriplesMap> coll = mm.importMappings(m);
Assert.assertTrue(coll.size() == 1);
Iterator<TriplesMap> it = coll.iterator();
while (it.hasNext()) {
TriplesMap current = it.next();
Iterator<PredicateObjectMap> iter = current.getPredicateObjectMaps().iterator();
while (iter.hasNext()) {
PredicateObjectMap pom = iter.next();
int cont = 0;
Iterator<PredicateMap> ii = pom.getPredicateMaps().iterator();
while (ii.hasNext()) {
ii.next();
cont++;
}
Assert.assertTrue(cont == 2);
}
}
}
@Test
public void testRead() throws Exception {
Model shapesModel = RDFReaderFactory.createResourceReader(shapeResource).read();
List<Shape> shapes =
shapesModel
.listResourcesWithProperty(RDF.type, SHACL.Shape)
.toList()
.stream()
.map(r -> ShapeReader.create().read(r))
.collect(Collectors.toList());
assertThat(shapes).hasSize(1);
Shape sh = shapes.get(0);
assertThat(sh.getScopes()).hasSize(ShapeScopeType.values().length);
List<ShapeScopeType> scopeTypes =
sh.getScopes()
.stream()
.map(ShapeScope::getScopeType)
.distinct()
.collect(Collectors.toList());
// distinct scopes
assertThat(scopeTypes).hasSize(ShapeScopeType.values().length);
}
/** Find the set of resources referenced by the path */
public static Set<RDFNode> getNodes(Model model, RDFNode first, Path path) {
List<Step> steps = path.getSteps();
Set<RDFNode> starts = Collections.singleton(first);
for (Step step : steps) {
String propertyName = step.getPropertyName();
boolean isInverse = step.isInverse();
Property property = model.createProperty(propertyName);
Set<RDFNode> nodes = new HashSet<RDFNode>();
for (RDFNode start : starts) {
Set<RDFNode> tmp;
if (!isInverse) {
tmp = model.listObjectsOfProperty(start.asResource(), property).toSet();
} else if (start.isResource()) {
tmp = new HashSet<RDFNode>(model.listSubjectsWithProperty(property, start).toSet());
} else {
tmp = Collections.<RDFNode>emptySet();
}
nodes.addAll(tmp);
}
starts = nodes;
}
return starts;
}
/**
* Determine whether the given property is recognized and treated specially by this reasoner. This
* is a convenience packaging of a special case of getCapabilities.
*
* @param property the property which we want to ask the reasoner about, given as a Node since
* this is part of the SPI rather than API
* @return true if the given property is handled specially by the reasoner.
*/
@Override
public boolean supportsProperty(Property property) {
if (factory == null) return false;
Model caps = factory.getCapabilities();
Resource root = caps.getResource(factory.getURI());
return caps.contains(root, ReasonerVocabulary.supportsP, property);
}
private Dataset assemble(final Resource example) {
Model model = example.getModel();
model.setNsPrefix("ja", JA.getURI());
// System.out.println("-------------");
// RDFDataMgr.write(System.out, model, Lang.TTL) ;
final InMemDatasetAssembler testAssembler = new InMemDatasetAssembler();
return testAssembler.open(testAssembler, example, DEFAULT);
}
@Test
public void testEquality() throws Exception {
Model ttl = ModelFactory.createDefaultModel().read(getTTLInput(), NS, "TTL");
Model rdf = ModelFactory.createDefaultModel().read(getRDFInput(), NS, "RDF/XML-ABBREV");
assertTrue(ttl.isIsomorphicWith(rdf));
assertTrue(rdf.isIsomorphicWith(ttl));
}
@Test
public void emptyDataset() {
final Model model = createDefaultModel();
final Resource empty = model.createResource("test:empty");
empty.addProperty(type, DatasetAssemblerVocab.tDatasetTxnMem);
Dataset dataset = assemble(empty);
assertFalse(dataset.asDatasetGraph().find().hasNext());
}
@Test
public void directDataLinkToQuads() throws IOException {
// first make a file of quads to load later
final Model model = createDefaultModel();
final Path quads = createTempFile("quadExample", ".nq");
final Resource quadsURI = model.createResource(quads.toFile().toURI().toString());
final Resource simpleExample = model.createResource("test:simpleExample");
simpleExample.addProperty(type, DatasetAssemblerVocab.tDatasetTxnMem);
simpleExample.addProperty(data, quadsURI);
final DatasetGraph dsg = createTxnMem().asDatasetGraph();
model
.listStatements()
.mapWith(Statement::asTriple)
.mapWith(t -> new Quad(quadsURI.asNode(), t))
.forEachRemaining(dsg::add);
try (OutputStream out = new FileOutputStream(quads.toFile())) {
write(out, dsg, NQUADS);
}
final Dataset dataset = assemble(simpleExample);
final Model assembledDefaultModel = dataset.getDefaultModel();
final Model assembledNamedModel = dataset.getNamedModel(quadsURI.getURI());
assertTrue(assembledDefaultModel.isEmpty());
assertTrue(
assembledNamedModel.contains(
assembledNamedModel.createStatement(simpleExample, data, quadsURI)));
}
/** Run a single test of any sort, return true if the test succeeds. */
public boolean doRunTest(Resource test) throws IOException {
if (test.hasProperty(RDF.type, OWLTest.PositiveEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.OWLforOWLTest)
|| test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.TrueTest)) {
// Entailment tests
boolean processImports = test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest);
Model premises = getDoc(test, RDFTest.premiseDocument, processImports);
Model conclusions = getDoc(test, RDFTest.conclusionDocument);
comprehensionAxioms(premises, conclusions);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(premises.getGraph());
if (printProfile) {
((FBRuleInfGraph) graph).resetLPProfile(true);
}
Model result = ModelFactory.createModelForGraph(graph);
boolean correct = WGReasonerTester.testConclusions(conclusions.getGraph(), result.getGraph());
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
if (printProfile) {
((FBRuleInfGraph) graph).printLPProfile();
}
if (test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)) {
correct = !correct;
}
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.InconsistencyTest)) {
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = !graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.ConsistencyTest)) {
// Not used normally becase we are not complete enough to prove consistency
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else {
for (StmtIterator i = test.listProperties(RDF.type); i.hasNext(); ) {
System.out.println("Test type = " + i.nextStatement().getObject());
}
throw new ReasonerException("Unknown test type");
}
}
public void testWithContent() throws IOException {
File f = FileUtils.tempFileName("assembler-acceptance-", ".n3");
Model data = model("a P b; b Q c");
try (FileOutputStream fs = new FileOutputStream(f)) {
data.write(fs, "N3");
}
Resource root =
resourceInModel(
"x rdf:type ja:MemoryModel; x ja:content y; y ja:externalContent file:"
+ f.getAbsolutePath());
Model m = Assembler.general.openModel(root);
assertIsoModels(data, m);
}
public static ArrayList<RdfModel> processRDF(InputStream in) {
Model model = ModelFactory.createDefaultModel();
ArrayList<RdfModel> result = new ArrayList<RdfModel>();
if (in != null) {
model.read(in, "RDF/XML");
// Now, I only care these propties: has-title, year-of, full-name. All three of them must
// exist'
for (final ResIterator it = model.listSubjectsWithProperty(RdfPropertyList.p_hasTitle);
it.hasNext(); ) {
RdfModel rm = new RdfModel();
try {
final Resource node =
it.next().asResource(); // node is a resource which has title property
rm.setHasTitle(node.getProperty(RdfPropertyList.p_hasTitle).getString());
StringBuilder authors = new StringBuilder();
StringBuilder dates = new StringBuilder();
for (final StmtIterator all_props = node.listProperties(); all_props.hasNext(); ) {
try {
Resource all_res = all_props.next().getObject().asResource();
StmtIterator fullnames = all_res.listProperties(RdfPropertyList.p_fullName);
StmtIterator years = all_res.listProperties(RdfPropertyList.p_year);
// Just for now I may have mutiple author or dates in a String, seperated by comma
RdfProcess newprocess = new RdfProcess();
while (fullnames.hasNext()) {
String fullname = newprocess.getValue(fullnames.next().getObject());
if (!fullname.equals("Invalid/Lack of Information")) {
authors.append(fullname + " , ");
}
}
while (years.hasNext()) {
String year = newprocess.getValue(years.next().getObject());
if (!year.equals("Invalid/Lack of Information")) {
dates.append(year + " , ");
}
}
} catch (Exception e) {
}
}
rm.setHasDate(dates.toString());
rm.setHasAuthor(authors.toString());
} catch (Exception e) {
}
result.add(rm);
}
}
return result;
}
/** Initialize the result model. */
public void initResults() {
testResults = ModelFactory.createDefaultModel();
jena2 = testResults.createResource(BASE_RESULTS_URI + "#jena2");
jena2.addProperty(
RDFS.comment,
testResults.createLiteral(
"<a xmlns=\"http://www.w3.org/1999/xhtml\" href=\"http://jena.sourceforce.net/\">Jena2</a> includes a rule-based inference engine for RDF processing, "
+ "supporting both forward and backward chaining rules. Its OWL rule set is designed to provide sound "
+ "but not complete instance resasoning for that fragment of OWL/Full limited to the OWL/lite vocabulary. In"
+ "particular it does not support unionOf/complementOf.",
true));
jena2.addProperty(RDFS.label, "Jena2");
testResults.setNsPrefix("results", OWLResults.NS);
}
public static void main(String... argv) throws Exception {
// //Model model = ModelFactory.createDefaultModel() ;
// //String x = "<s> <p> 'verify it works' ." ;
//
//
// //Reader sr = getTTLReader();
// //model.read(sr, "http://example/", "TTL") ;
// //model.read(sr, "", "TTL") ;
// //model.read( getRDFInput() );
// Model ttl = ModelFactory.createDefaultModel().read( getTTLInput(),
// "", "TTL");
// Model rdf = ModelFactory.createDefaultModel().read( getRDFInput(),
// "", "RDF/XML-ABBREV");
//
// ttl.write(System.out, "RDF/XML-ABBREV") ;
// System.out.println("-----") ;
// // model.setNsPrefix("ex", "http://example/") ;
// rdf.write(System.out, "N-TRIPLES") ;
// System.out.println("-----") ;
// System.out.println( getTTLName() );
// System.out.println( "ttl iso rdf: "+ttl.isIsomorphicWith(rdf));
//
// System.out.println( getRDFName() );
// System.out.println( "rdf iso ttl: "+rdf.isIsomorphicWith(ttl));
String[] lines = {
"<rdf:RDF",
" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\">",
" <rdf:Description rdf:about=\"e\">",
" <p5>verify base works</p5>",
" </rdf:Description>",
"</rdf:RDF>"
};
String eol = System.getProperty("line.separator");
StringBuilder sb = new StringBuilder();
for (String l : lines) {
sb.append(l).append(eol);
}
Model model = ModelFactory.createDefaultModel();
StringReader sr = new StringReader(sb.toString());
model.read(sr, "http://example/");
model.write(System.out, "N-TRIPLES");
System.out.println("-----");
model.setNsPrefix("ex", "http://example/");
model.write(System.out, "RDF/XML-ABBREV", "http://another/");
}
@Override
public void initResource() {
applicationEntity = model.createResource(baseuri + this.dto.get_uri());
parentResource = model.createResource(baseuri + "/" + Utils.getParentURI(this.dto.get_uri()));
resourceName = dto.getRn();
resourceId = dto.getRi();
if (dto.getLbl() != null) {
for (int i = 0; i < dto.getLbl().length; i++) {
label = label + "," + dto.getLbl()[i];
}
} else {
label = "";
}
ontologyReference = this.dto.getOr();
}
@Test
public void dataset_05() {
String graphName = "http://example/";
Dataset ds = createFixed();
ds.addNamedModel(graphName, model1);
ds.replaceNamedModel(graphName, model2);
assertTrue(ds.containsNamedModel(graphName));
List<String> x = Iter.toList(ds.listNames());
assertEquals(1, x.size());
assertEquals(graphName, x.get(0));
assertFalse(model1.isIsomorphicWith(ds.getNamedModel(graphName)));
assertTrue(model2.isIsomorphicWith(ds.getNamedModel(graphName)));
}
private Model JoinMap(Model map) {
Model newMap = ModelFactory.createDefaultModel();
StmtIterator stmts = map.listStatements();
while (stmts.hasNext()) {
Statement s = stmts.next();
if (s.getSubject().isURIResource() || s.getObject().isURIResource()) {
s =
newMap.createStatement(
checkUri(s.getSubject().asNode(), newMap).asResource(),
s.getPredicate(),
checkUri(s.getObject().asNode(), newMap));
}
newMap.add(s);
}
return newMap;
}
/** Return a list of all tests of the given type, according to the current filters */
public List<Resource> findTestsOfType(Resource testType) {
ArrayList<Resource> result = new ArrayList<>();
StmtIterator si = testDefinitions.listStatements(null, RDF.type, testType);
while (si.hasNext()) {
Resource test = si.nextStatement().getSubject();
boolean accept = true;
// Check test status
Literal status = (Literal) test.getProperty(RDFTest.status).getObject();
if (approvedOnly) {
accept = status.getString().equals(STATUS_FLAGS[0]);
} else {
accept = false;
for (String STATUS_FLAG : STATUS_FLAGS) {
if (status.getString().equals(STATUS_FLAG)) {
accept = true;
break;
}
}
}
// Check for blocked tests
for (String BLOCKED_TEST : BLOCKED_TESTS) {
if (BLOCKED_TEST.equals(test.toString())) {
accept = false;
}
}
// End of filter tests
if (accept) {
result.add(test);
}
}
return result;
}
/** Test RDF model of a Context. */
@Test
public final void testRdfModel() {
final Context context =
new Context("My favorite actress is: Natalie Portman. She is very " + "stunning.", 0, 62);
final Sentence sentence = NullSentence.getInstance();
final Model model = ModelFactory.createDefaultModel();
context.addSentence(sentence);
final String nif = "http://persistence.uni-leipzig.org/nlp2rdf/ontologies/nif-core#";
final Map<String, String> prefixes = new HashMap<>();
prefixes.put("nif", nif);
final String base = "http://127.0.0.1/stanfordnlp#";
prefixes.put("local", base);
prefixes.put("xsd", "http://www.w3.org/2001/XMLSchema#");
model.setNsPrefixes(prefixes);
model.add(
ResourceFactory.createResource(base + "char=0,62"),
RDF.type,
ResourceFactory.createResource(nif + "String"));
model.add(
ResourceFactory.createResource(base + "char=0,62"),
RDF.type,
ResourceFactory.createResource(nif + "RFC5147String"));
model.add(
ResourceFactory.createResource(base + "char=0,62"),
RDF.type,
ResourceFactory.createResource(nif + "Context"));
model.add(
ResourceFactory.createResource(base + "char=0,62"),
ResourceFactory.createProperty(nif + "beginIndex"),
ResourceFactory.createTypedLiteral("0", XSDDatatype.XSDnonNegativeInteger));
model.add(
ResourceFactory.createResource(base + "char=0,62"),
ResourceFactory.createProperty(nif + "endIndex"),
ResourceFactory.createTypedLiteral("62", XSDDatatype.XSDnonNegativeInteger));
model.add(
ResourceFactory.createResource(base + "char=0,62"),
ResourceFactory.createProperty(nif + "isString"),
ResourceFactory.createTypedLiteral(
"My favorite actress is: Natalie Portman. She is very " + "stunning."));
Assert.assertTrue(
"Issue to create the model for a Context",
model.isIsomorphicWith(context.rdfModel("stanfordnlp", NlpProcess.POS)));
}
@Test
public void testSecurityEvaluatorWithModelArgs() throws Exception {
Resource r = model.createResource("http://apache.org/jena/permissions/test#secEvaluator2");
Object o = assembler.open(r);
Assert.assertTrue(o instanceof SecurityEvaluator);
Assert.assertTrue(o instanceof ModelBasedSecurityEvaluator);
}
@Test
public void testCreationWithArgs() throws Exception {
Resource r = model.createResource("http://apache.org/jena/permissions/test#secModel2");
Object o = assembler.open(r);
Assert.assertTrue(o instanceof Model);
Assert.assertTrue(o instanceof SecuredModel);
}
/**
* Example the conclusions graph for introduction of restrictions which require a comprehension
* rewrite and declare new (anon) classes for those restrictions.
*/
public void comprehensionAxioms(Model premises, Model conclusions) {
// Comprehend all restriction declarations and note them in a map
Map<Resource, Resource> comprehension = new HashMap<>();
StmtIterator ri = conclusions.listStatements(null, RDF.type, OWL.Restriction);
while (ri.hasNext()) {
Resource restriction = ri.nextStatement().getSubject();
StmtIterator pi = restriction.listProperties(OWL.onProperty);
while (pi.hasNext()) {
Resource prop = (Resource) pi.nextStatement().getObject();
StmtIterator vi = restriction.listProperties();
while (vi.hasNext()) {
Statement rs = vi.nextStatement();
if (!rs.getPredicate().equals(OWL.onProperty)) {
// Have a restriction on(prop) of type rs in the conclusions
// So assert a premise that such a restriction could exisit
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Restriction)
.addProperty(OWL.onProperty, prop)
.addProperty(rs.getPredicate(), rs.getObject());
comprehension.put(restriction, comp);
}
}
}
}
// Comprehend any intersectionOf lists. Introduce anon class which has the form
// of the intersection expression.
// Rewrite queries of the form (X intersectionOf Y) to the form
// (X equivalentClass ?CC) (?CC intersectionOf Y)
StmtIterator ii = conclusions.listStatements(null, OWL.intersectionOf, (RDFNode) null);
List<Statement> intersections = new ArrayList<>();
while (ii.hasNext()) {
intersections.add(ii.nextStatement());
}
for (Statement is : intersections) {
// Declare in the premises that such an intersection exists
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Class)
.addProperty(
OWL.intersectionOf, mapList(premises, (Resource) is.getObject(), comprehension));
// Rewrite the conclusions to be a test for equivalence between the class being
// queried and the comprehended interesection
conclusions.remove(is);
conclusions.add(is.getSubject(), OWL.equivalentClass, comp);
}
// Comprehend any oneOf lists
StmtIterator io = conclusions.listStatements(null, OWL.oneOf, (RDFNode) null);
while (io.hasNext()) {
Statement s = io.nextStatement();
Resource comp = premises.createResource().addProperty(OWL.oneOf, s.getObject());
}
}
@Before
public void setUp() throws Exception {
model = ModelFactory.createDefaultModel();
URL url =
SecuredAssemblerTest.class
.getClassLoader()
.getResource(SecuredAssemblerTest.class.getName().replace(".", "/") + ".ttl");
model.read(url.toURI().toString(), "TURTLE");
}
public static void main(String args[]) {
OntModel m = ModelFactory.createOntologyModel();
OntDocumentManager dm = m.getDocumentManager();
dm.addAltEntry(
"http://www.eswc2006.org/technologies/ontology",
"file:" + JENA + "src/examples/resources/eswc-2006-09-21.rdf");
m.read("http://www.eswc2006.org/technologies/ontology");
// create an empty model
Model model = ModelFactory.createDefaultModel();
// create the resource
Resource johnSmith = model.createResource(personURI);
// add the property
johnSmith.addProperty(VCARD.FN, fullName);
johnSmith.addProperty(
VCARD.N,
model.createResource().addProperty(VCARD.Given, "jon").addProperty(VCARD.Family, "Smit"));
// list the statements in the Model
StmtIterator iter = model.listStatements();
// print out the predicate, subject and object of each statement
while (iter.hasNext()) {
Statement stmt = iter.nextStatement(); // get next statement
Resource subject = stmt.getSubject(); // get the subject
Property predicate = stmt.getPredicate(); // get the predicate
RDFNode object = stmt.getObject(); // get the object
System.out.print(subject.toString());
System.out.print(" " + predicate.toString() + " ");
if (object instanceof Resource) {
System.out.print(object.toString());
} else {
// object is a literal
System.out.print(" \"" + object.toString() + "\"");
}
System.out.println(" .");
}
}
public void testBasic() {
Model mrdfs = ModelFactory.createRDFSModel(ModelFactory.createDefaultModel());
Model concrete = ModelFactory.createDefaultModel();
concrete.add(mrdfs);
assertIsomorphic(concrete.getGraph(), mrdfs.getGraph());
assertIsomorphic(mrdfs.getGraph(), concrete.getGraph());
}
@Test
public void dataset_04() {
String graphName = "http://example/";
Dataset ds = createFixed();
ds.addNamedModel(graphName, model1);
assertTrue(ds.containsNamedModel(graphName));
List<String> x = Iter.toList(ds.listNames());
assertEquals(1, x.size());
assertEquals(graphName, x.get(0));
assertFalse(model1.isIsomorphicWith(ds.getDefaultModel()));
Model m = ds.getNamedModel(graphName);
assertNotNull(m);
assertTrue(model1.isIsomorphicWith(m));
ds.removeNamedModel(graphName);
// Not getNamedModel and test for null as some datasets are "auto graph creating"
assertFalse(ds.containsNamedModel(graphName));
}
public static void main(String[] args) {
DOMParser domparser = new DOMParser();
LogCtl.setLog4j("jena-log4j.properties");
Model model = ModelFactory.createDefaultModel();
domparser.buildModel(model);
String fileName = "10Authors.rdf";
FileWriter out;
try {
out = new FileWriter(fileName);
model.write(out, "RDF/XML-ABBREV");
out.close();
} catch (IOException e1) {
// TODO Auto-generated catch block
e1.printStackTrace();
}
}
public static void main(String[] args) throws IOException {
if (args.length != 2) {
err.println("usage: difference <db1> <db2>");
}
Dataset ds1 = dataset_(args[0]);
Dataset ds2 = dataset_(args[1]);
Model m1 = ds1.getDefaultModel();
Model m2 = ds2.getDefaultModel();
System.out.println(m1.size());
System.out.println(m2.size());
Model m1_minus_m2 = m1.difference(m2);
RDFDataMgr.write(
new FileOutputStream("missing-orthologousMatch-in-biological-concepts-db.ttl"),
m1_minus_m2,
Lang.TURTLE);
ds1.close();
ds2.close();
}