@Override
public void handle(HttpExchange arg0) throws IOException {
try {
String message =
"<html><body><table border=\"1\"><tr><th>Email</th><th>Submitted at:</th><th>Progress:</th><th>Status:</th><th>Job id</th></tr>";
for (int i = 0; i < jobs.size(); i++) {
TnrsJob job = jobs.get(i);
message +=
"<tr> <td> "
+ job.getRequest().getEmail()
+ "</td><td>"
+ job.getSubmissionDate()
+ " </td><td> "
+ job.progress()
+ "% </td><td> "
+ job.status()
+ "</td><td>"
+ job.getRequest().getId()
+ "</td></tr>\n";
}
message += "</table>";
HandlerHelper.writeResponseRequest(arg0, 200, message, "text/html");
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
String jsons = IOUtils.toString(arg0.getRequestBody());
JSONObject json = (JSONObject) JSONSerializer.toJSON(jsons);
if (!json.containsKey("valid")) return;
Email response = new SimpleEmail();
response.setHostName(properties.getProperty("org.iplantc.tnrs.mail.host"));
response.setSmtpPort(
Integer.parseInt(properties.getProperty("org.iplantc.tnrs.mail.port")));
response.setFrom("*****@*****.**");
response.setSubject("TNRS support Ticket");
response.setMsg(
"TNRS support ticket from: "
+ json.getString("name")
+ " ("
+ json.getString("email")
+ "). "
+ "\n\n\n"
+ json.getString("contents"));
response.addTo("*****@*****.**");
response.send();
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
@Test
public void testCommandGetSingleDocument() {
running(
fakeApplication(),
() -> {
try {
DbHelper.open("1234567890", TEST_USER, TEST_USER);
ObjectNode cmd = MAPPER.createObjectNode();
ObjectNode p = MAPPER.createObjectNode();
p.put("collection", TEST_COLLECTION);
p.put("id", sGenIds.get(0));
cmd.put(ScriptCommand.RESOURCE, "documents");
cmd.put(ScriptCommand.NAME, "get");
cmd.put(ScriptCommand.PARAMS, p);
JsonNode node = CommandRegistry.execute(cmd, null);
assertNotNull(node);
assertTrue(node.isObject());
assertNotNull(node.get("generated"));
assertNotNull(node.get("id"));
assertEquals(node.get("id").asText(), sGenIds.get(0));
assertEquals(node.get("@class").asText(), TEST_COLLECTION);
} catch (Throwable t) {
fail(ExceptionUtils.getFullStackTrace(t));
} finally {
DbHelper.close(DbHelper.getConnection());
}
});
}
@Test
public void testCreateDocument() {
running(
fakeApplication(),
() -> {
try {
DbHelper.open("1234567890", TEST_USER, TEST_USER);
ObjectNode params = MAPPER.createObjectNode();
ObjectNode doc = MAPPER.createObjectNode();
doc.put("fresh", "fresh");
params.put("collection", TEST_COLLECTION);
params.put("data", doc);
ObjectNode cmd = ScriptCommands.createCommand("documents", "post", params);
JsonNode exec = CommandRegistry.execute(cmd, null);
assertNotNull(exec);
assertTrue(exec.isObject());
assertNotNull(exec.get("id"));
assertEquals(TEST_COLLECTION, exec.get("@class").asText());
} catch (Throwable t) {
fail(ExceptionUtils.getFullStackTrace(t));
} finally {
DbHelper.close(DbHelper.getConnection());
}
});
}
@Test
public void testCommandGetFilteredCollection() {
running(
fakeApplication(),
() -> {
try {
DbHelper.open("1234567890", TEST_USER, TEST_USER);
ObjectNode cmd = MAPPER.createObjectNode();
ObjectNode p = MAPPER.createObjectNode();
ObjectNode q = MAPPER.createObjectNode();
q.put("where", "idx < ?");
ArrayNode params = MAPPER.createArrayNode();
params.add("5");
q.put("params", params);
p.put("collection", TEST_COLLECTION);
p.put("query", q);
cmd.put(ScriptCommand.RESOURCE, "documents");
cmd.put(ScriptCommand.NAME, "list");
cmd.put(ScriptCommand.PARAMS, p);
JsonNode node = CommandRegistry.execute(cmd, null);
assertNotNull(node);
assertTrue(node.isArray());
assertEquals(5, node.size());
} catch (Throwable t) {
fail(ExceptionUtils.getFullStackTrace(t));
} finally {
DbHelper.close(DbHelper.getConnection());
}
});
}
@With({UserCredentialWrapFilter.class, ConnectToDBFilter.class})
@BodyParser.Of(BodyParser.Json.class)
public static Result changePassword() {
if (BaasBoxLogger.isTraceEnabled()) BaasBoxLogger.trace("Method Start");
Http.RequestBody body = request().body();
JsonNode bodyJson = body.asJson();
if (BaasBoxLogger.isTraceEnabled()) BaasBoxLogger.trace("changePassword bodyJson: " + bodyJson);
if (bodyJson == null)
return badRequest(
"The body payload cannot be empty. Hint: put in the request header Content-Type: application/json");
// check and validate input
if (!bodyJson.has("old")) return badRequest("The 'old' field is missing");
if (!bodyJson.has("new")) return badRequest("The 'new' field is missing");
String currentPassword = DbHelper.getCurrentHTTPPassword();
String oldPassword = (String) bodyJson.findValuesAsText("old").get(0);
String newPassword = (String) bodyJson.findValuesAsText("new").get(0);
if (!oldPassword.equals(currentPassword)) {
return badRequest("The old password does not match with the current one");
}
try {
UserService.changePasswordCurrentUser(newPassword);
} catch (OpenTransactionException e) {
BaasBoxLogger.error(ExceptionUtils.getFullStackTrace(e));
throw new RuntimeException(e);
}
if (BaasBoxLogger.isTraceEnabled()) BaasBoxLogger.trace("Method End");
return ok();
}
@BeforeClass
public static void initTestser() {
running(
fakeApplication(),
() -> {
try {
DbHelper.open("1234567890", "admin", "admin");
ODocument user =
UserService.signUp(TEST_USER, TEST_USER, new Date(), null, null, null, null, false);
assertNotNull(user);
ODocument alt =
UserService.signUp(
TEST_ALT_USER, TEST_ALT_USER, new Date(), null, null, null, null, false);
assertNotNull(alt);
CollectionService.create(TEST_COLLECTION);
DbHelper.close(DbHelper.getConnection());
DbHelper.open("1234567890", TEST_USER, TEST_USER);
sGenIds = createRandomDocuments(10);
DbHelper.close(DbHelper.getConnection());
} catch (Throwable e) {
fail(ExceptionUtils.getFullStackTrace(e));
} finally {
DbHelper.close(DbHelper.getConnection());
}
});
}
@Override
public void run() {
try {
StopWatch stp2 = new StopWatch();
stp2.start();
JSONObject json = new JSONObject();
job.setStatus("running");
if (job.progress() == 100.0) {
finalizeJob(job);
return;
}
Vector<String> ids = new Vector<String>();
Vector<String> original_names = new Vector<String>();
String data = job.getNextDataBatch();
if (data == null || data.equals("")) return;
String[] lines = data.split("\n");
if (job.containsId()) {
for (int i = 0; i < lines.length; i++) {
if (lines[i].trim().equals("")) continue;
ids.add(NameUtil.getNameId(lines[i]));
}
}
for (int i = 0; i < lines.length; i++) {
original_names.add(NameUtil.processName(lines[i], job.containsId()));
}
String names = NameUtil.CleanNames(lines, job);
if (names.equals("")) return;
if (job.getType() == TnrsJob.NAME_MATCH_JOB) {
TaxamatchInterface taxa_match = new TaxamatchInterface(tnrsBaseUrl);
String result = taxa_match.queryTaxamatch(names, job);
json = (JSONObject) JSONSerializer.toJSON(result);
} else if (job.getType() == TnrsJob.PARSING_JOB) {
json = gni_interface.parseNames(names);
}
if (job.outstandingNames() == 0) {
JobHelper.persistJobInfo(baseFolder, job);
}
saveResults(job, json, ids, original_names, "");
job.setStatus("idle");
stp2.stop();
log.info("overall :" + stp2.toString());
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
job.setStatus("failed");
ex.printStackTrace();
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject request =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String email = request.getString("email");
String key = request.getString("key");
for (int i = 0; i < jobs.size(); i++) {
TnrsJob job = jobs.get(i);
if (job.getRequest().getId().equals(key) && job.getRequest().getEmail().equals(email)) {
JSONObject json = (JSONObject) JSONSerializer.toJSON(job.toJsonString());
json.put("status", "incomplete");
json.put("progress", job.progress());
HandlerHelper.writeResponseRequest(arg0, 200, json.toString(), "application/json");
return;
}
}
if (JobHelper.jobFileExists(baseFolder, email, key)) {
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
HandlerHelper.writeResponseRequest(arg0, 200, job.toJsonString(), "application/json");
} else {
HandlerHelper.writeResponseRequest(
arg0, 500, "No such job exists o it might have expired", "text/plain");
}
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
/**
* insert rollback
*
* @author zhuoxue
* @since 5.0.1
*/
@Test
public void insertRollbackTest() throws Exception {
// TODO:ob bug，读取不到事务内的最新数据
if (normaltblTableName.startsWith("ob")) {
return;
}
String sql = "insert into " + normaltblTableName + " values(?,?,?,?,?,?,?)";
List<Object> param = new ArrayList<Object>();
param.add(RANDOM_ID);
param.add(RANDOM_INT);
param.add(gmt);
param.add(gmt);
param.add(gmt);
param.add(name);
param.add(fl);
tddlConnection.setAutoCommit(false);
mysqlConnection.setAutoCommit(false);
mysqlPreparedStatement = null;
try {
int mysqlAffectRow = mysqlUpdateDataTranscation(sql, param);
int andorAffectRow = tddlUpdateDataTranscation(sql, param);
Assert.assertEquals(mysqlAffectRow, andorAffectRow);
// 在事物内内查到数据
sql = "select * from " + normaltblTableName + " where pk=" + RANDOM_ID;
String[] columnParam = {"PK", "ID", "GMT_CREATE", "NAME", "FLOATCOL"};
selectOrderAssertTranscation(sql, columnParam, null);
mysqlConnection.rollback();
tddlConnection.rollback();
// 在事物回滚查询不到数据
selectOrderAssertTranscation(sql, columnParam, null);
} catch (Exception ex) {
try {
mysqlConnection.rollback();
tddlConnection.rollback();
} catch (Exception ee) {
}
throw ex;
}
// 多次回滚和提交保证不出现异常
try {
tddlConnection.commit();
tddlConnection.commit();
tddlConnection.rollback();
tddlConnection.rollback();
} catch (Exception e) {
Assert.fail(ExceptionUtils.getFullStackTrace(e));
}
}
@Test
public void testFunctionalMMSService() {
try {
MetadataModelService mmsService = getOsgiService(MetadataModelService.class, 30000L);
assertNotNull(mmsService);
// make sure we can generate domain models and annotate metadata
UMLProjectIdentifer project = new UMLProjectIdentifer();
project.setIdentifier("caCORE 3.2");
project.setVersion("3.2");
System.out.println(
"Creating domain model for project: "
+ project.getIdentifier()
+ " (version:"
+ project.getVersion()
+ ")");
// TEST THE MMS OSGI SERVICE
DomainModel model = null;
try {
model =
mmsService.generateDomainModelForPackages(
project, new String[] {"gov.nih.nci.cabio.domain"});
System.out.println(model.getProjectLongName());
for (Iterator iterator = model.getExposedUMLClassCollection().getUMLClass().iterator();
iterator.hasNext(); ) {
UMLClass type = (UMLClass) iterator.next();
System.out.println("\t" + type.getClassName());
}
} catch (InvalidUMLProjectIndentifier e) {
e.printStackTrace();
fail(ExceptionUtils.getFullStackTrace(e));
}
assertNotNull(model);
} catch (Exception e) {
e.printStackTrace();
fail(ExceptionUtils.getFullStackTrace(e));
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject json =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
JSONObject result = new JSONObject();
String email = json.getString("email");
String key = json.getString("key");
for (int i = 0; i < jobs.size(); i++) {
TnrsJob job = jobs.get(i);
if (job.getRequest().getEmail().equals(email) && job.getRequest().getId().equals(key)) {
if (job.status().equals("failed") || job.status().equals("error")) {
result.put("type", "failed");
} else {
result.put("type", "incomplete");
double progress = job.progress();
if (job.progress() == 100.0) {
progress = 99.0;
}
result.put("progress", progress);
}
HandlerHelper.writeResponseRequest(arg0, 200, result.toString(), "application/json");
return;
}
}
String filename = baseFolder + email.replace("@", "-").replace(".", "-") + "/result" + key;
File results = new File(filename);
if (!results.exists()) {
result.put("type", "non-existent");
} else {
result.put("type", "complete");
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
result.put("job_type", job.getTypeString());
}
HandlerHelper.writeResponseRequest(arg0, 200, result.toString(), "application/json");
return;
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
/**
* * Returns the people those the given user is following
*
* @param username
* @return
*/
@With({UserCredentialWrapFilter.class, ConnectToDBFilter.class, ExtractQueryParameters.class})
public static Result following(String username) {
if (StringUtils.isEmpty(username)) username = DbHelper.currentUsername();
try {
Context ctx = Http.Context.current.get();
QueryParams criteria = (QueryParams) ctx.args.get(IQueryParametersKeys.QUERY_PARAMETERS);
List<ODocument> following = FriendShipService.getFollowing(username, criteria);
return ok(prepareResponseToJson(following));
} catch (SqlInjectionException e) {
return internalServerError(ExceptionUtils.getFullStackTrace(e));
}
}
@With({UserCredentialWrapFilter.class, ConnectToDBFilter.class})
public static Result disable() {
try {
UserService.disableCurrentUser();
} catch (UserNotFoundException e) {
return badRequest(ExceptionUtils.getMessage(e));
} catch (OpenTransactionException e) {
BaasBoxLogger.error(ExceptionUtils.getFullStackTrace(e));
throw new RuntimeException(e);
}
return ok();
}
@With({
AdminCredentialWrapFilter.class,
ConnectToDBFilter.class,
})
@BodyParser.Of(BodyParser.Json.class)
public static Result signUp() {
Logger.trace("Method Start");
Http.RequestBody body = request().body();
JsonNode bodyJson = body.asJson();
Logger.trace("signUp bodyJson: " + bodyJson);
if (bodyJson == null)
return badRequest(
"The body payload cannot be empty. Hint: put in the request header Content-Type: application/json");
// check and validate input
if (!bodyJson.has("username")) return badRequest("The 'username' field is missing");
if (!bodyJson.has("password")) return badRequest("The 'password' field is missing");
// extract mandatory fields
JsonNode nonAppUserAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_ANONYMOUS_USER);
JsonNode privateAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_ONLY_BY_THE_USER);
JsonNode friendsAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_FRIENDS_USER);
JsonNode appUsersAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_REGISTERED_USER);
String username = (String) bodyJson.findValuesAsText("username").get(0);
String password = (String) bodyJson.findValuesAsText("password").get(0);
if (privateAttributes != null && privateAttributes.has("email")) {
// check if email address is valid
if (!Util.validateEmail((String) privateAttributes.findValuesAsText("email").get(0)))
return badRequest("The email address must be valid.");
}
// try to signup new user
try {
UserService.signUp(
username,
password,
nonAppUserAttributes,
privateAttributes,
friendsAttributes,
appUsersAttributes);
} catch (UserAlreadyExistsException e) {
Logger.debug("signUp", e);
return badRequest(username + " already exists");
} catch (Throwable e) {
Logger.warn("signUp", e);
if (Play.isDev()) return internalServerError(ExceptionUtils.getFullStackTrace(e));
else return internalServerError(e.getMessage());
}
Logger.trace("Method End");
return created();
}
/** @param parent parent to set */
public void setParentNode(INodePO parent) {
if (LOG.isErrorEnabled() && parent == null) {
try {
throw new IllegalArgumentException(
"The parent of the INodePO (GUID "
+ getGuid() //$NON-NLS-1$
+ ") is not intended to be set to null."); //$NON-NLS-1$
} catch (IllegalArgumentException e) {
LOG.info(ExceptionUtils.getFullStackTrace(e), e);
}
}
m_parentNode = parent;
}
private String getErrorText() {
Throwable t = (Throwable) getResult();
StringBuilder out = new StringBuilder();
out.append("An error occured: " + t.getMessage() + "\n\n");
if (MamConfigManager.get().getConfig().isDebug()) {
out.append(ExceptionUtils.getFullStackTrace(t));
}
return out.toString();
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject json =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String contents = json.getString("names");
byte[] fileContents = contents.getBytes("UTF-8");
ByteArrayOutputStream byteArray = new ByteArrayOutputStream();
GZIPOutputStream gzipStr = new GZIPOutputStream(byteArray);
gzipStr.write(fileContents);
gzipStr.close();
ByteArrayOutputStream byteArray2 = new ByteArrayOutputStream();
Base64OutputStream base64 = new Base64OutputStream(byteArray2);
base64.write(byteArray.toByteArray());
base64.close();
String value = new String(byteArray2.toByteArray());
json.remove("names");
json.put("upload", value);
HttpClient client = new HttpClient();
PostMethod post =
new PostMethod(
"http://"
+ properties.getProperty("org.iplantc.tnrs.servicesHost")
+ "/tnrs-svc/upload");
post.setRequestEntity(new StringRequestEntity(json.toString(), "text/plain", "UTF-8"));
client.executeMethod(post);
HandlerHelper.writeResponseRequest(arg0, 200, "", "text/plain");
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
ex.printStackTrace();
throw new IOException(ex);
}
}
public static Terms getTermVector(
int docId, String fieldname, SolrIndexSearcher solrIndexSearcher) throws JATEException {
try {
Terms vector = solrIndexSearcher.getLeafReader().getTermVector(docId, fieldname);
if (vector == null) throw new JATEException("Cannot find expected field: " + fieldname);
return vector;
} catch (IOException ioe) {
StringBuilder sb =
new StringBuilder(
String.format("Cannot find expected field: %s. Error stacktrack:\n", fieldname));
sb.append(org.apache.commons.lang.exception.ExceptionUtils.getFullStackTrace(ioe));
throw new JATEException(sb.toString());
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject command =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String job_id = command.getString("job_id");
TnrsJob job = null;
for (TnrsJob jobc : jobs) {
if (jobc.getRequest().getId().equals(job_id)) {
job = jobc;
break;
}
}
if (job == null) {
HandlerHelper.writeResponseRequest(arg0, 500, "Invalid job identifier", "text/plain");
}
if (command.getString("command").equals("stop")) {
synchronized (job) {
job.disable();
}
} else if (command.getString("command").equals("pause")) {
synchronized (job) {
job.pause();
}
} else if (command.getString("command").equals("resume")) {
synchronized (job) {
job.resume();
}
} else {
HandlerHelper.writeResponseRequest(arg0, 500, "Wrong command", "text/plain");
return;
}
HandlerHelper.writeResponseRequest(arg0, 200, "", "text/plain");
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
}
}
/**
* This main loop iterates over the submitted jobs and creates the corresponding threads that will
* carry the execution of each job segment.
*/
@Override
public void run() {
try {
int jobno = 0;
while (true) {
sleep(20);
synchronized (jobs) {
if (jobs.size() == 0) {
continue;
}
}
TnrsJob job = jobs.get(jobno % jobs.size());
if (job.status().equalsIgnoreCase("idle")) {
ExecutionThread thread = new ExecutionThread(job);
threads.add(thread);
thread.start();
} else if (job.status().equalsIgnoreCase("stopped")) {
jobs.remove(job);
JobHelper.cleanJobData(baseFolder, job);
jobno = 0;
continue;
} else if (job.status().equals("failed")) {
sendFailedJobEmail(job);
job.setStatus("error");
}
jobno++;
if (jobs.size() == 200) {
for (int i = 0; i < threads.size(); i++) {
threads.elementAt(i).join();
}
jobno = 0;
threads.clear();
}
sleep(10);
}
} catch (Exception e) {
log.error(ExceptionUtils.getFullStackTrace(e));
e.printStackTrace();
}
}
@RequestMapping(value = "export-list", method = RequestMethod.GET)
public String exportTaskList() {
Collection<Task> tasks = this.taskService.getAllTasks();
try {
String filePath = this.localSettingsProperties.getProperty(Constants.TASKS_FILE);
FileUtils.writeLines(new File(filePath), tasks);
} catch (IOException ex) {
LOGGER.error(ExceptionUtils.getFullStackTrace(ex));
}
return "redirect:/";
}
public HTableInterface getTable(String tablename) {
try {
if (connection == null) {
connection = HConnectionManager.createConnection(config);
}
return connection.getTable(tablename);
} catch (IOException e) {
LOG.error(ExceptionUtils.getFullStackTrace(e));
LOG.error("exception accurs when getting table from hconnection, will be retried");
try {
connection = HConnectionManager.createConnection(config);
return connection.getTable(tablename);
} catch (Throwable throwable) {
throw new RuntimeException(throwable);
}
}
}
@Test
public void testCommandAlterDocument() {
running(
fakeApplication(),
() -> {
try {
DbHelper.open("1234567890", TEST_USER, TEST_USER);
ObjectNode cmd = MAPPER.createObjectNode();
ObjectNode p = MAPPER.createObjectNode();
p.put("id", sGenIds.get(0));
p.put("collection", TEST_COLLECTION);
cmd.put(ScriptCommand.RESOURCE, "documents");
cmd.put(ScriptCommand.NAME, "get");
cmd.put(ScriptCommand.PARAMS, p);
JsonNode node = CommandRegistry.execute(cmd, null);
assertNotNull(node);
assertTrue(node.isObject());
ObjectNode doc = node.deepCopy();
doc.put("extra", "extra");
ObjectNode upd = MAPPER.createObjectNode();
upd.put(ScriptCommand.RESOURCE, "documents");
upd.put(ScriptCommand.NAME, "put");
ObjectNode params = MAPPER.createObjectNode();
params.put("collection", TEST_COLLECTION);
params.put("id", doc.get("id").asText());
params.put("data", doc);
upd.put(ScriptCommand.PARAMS, params);
JsonNode res = CommandRegistry.execute(upd, null);
assertNotNull(res);
assertTrue(res.isObject());
assertNotNull(res.get("extra"));
assertEquals(res.get("id"), doc.get("id"));
assertEquals("extra", res.get("extra").asText());
} catch (Throwable t) {
fail(ExceptionUtils.getFullStackTrace(t));
} finally {
DbHelper.close(DbHelper.getConnection());
}
});
}
/**
* Used for initial get of first page Log.setTcStartTime(); is called. use get(url) to get pages
* without overwriting the start time.
*
* @param url
*/
public boolean openUrl(String url) {
se.log().logSeStep("Open URL: " + url);
try {
se.driver().get(url);
deleteCookies();
se.log().setTcStartTime();
se.driver().get(url);
} catch (Exception e) {
se.log()
.logTcError(
String.format(
"Unhandled Exception in openUrl %s: %s: %s: %s",
url, e, e.getMessage(), ExceptionUtils.getFullStackTrace(e)),
takeScreenShot());
return false;
}
return se.driver().getTitle() != null;
}
@RequestMapping(value = "do-push", method = RequestMethod.GET)
public String pushOnNotificationEngine() {
JSONObject toBeSent = new JSONObject();
toBeSent.put(Constants.TOPIC, "todoApp");
JSONObject context = new JSONObject();
context.put(Constants.SUBJECT, "Notification from TodoApp");
context.put(Constants.CONTENT, "This notification has been sent directly from the TodoApp");
toBeSent.put(Constants.CONTEXT, context);
String stringToPost = toBeSent.toString();
final StringBuilder sb =
new StringBuilder(this.localSettingsProperties.getProperty(Constants.SERVER_URL));
sb.append(Constants.RAW_NOTIFICATION);
String url = sb.toString();
HttpClient client = new DefaultHttpClient();
HttpPost post = new HttpPost(url);
try {
StringEntity params = new StringEntity(stringToPost);
post.setEntity(params);
post.addHeader("Content-Type", "application/json");
HttpResponse response = client.execute(post);
LOGGER.info("Notification sent : " + stringToPost);
} catch (Exception ex) {
LOGGER.error(ExceptionUtils.getFullStackTrace(ex));
LOGGER.info("Notification not sent : " + stringToPost);
}
return "redirect:/";
}
@Test
public void testFunctionalMMS() {
try {
MMS mmsImpl = getOsgiService(MMS.class, 30000L);
assertNotNull(mmsImpl);
// make sure we can generate domain models and annotate metadata
UMLProjectIdentifer project = new UMLProjectIdentifer();
project.setIdentifier("caCORE 3.2");
project.setVersion("3.2");
System.out.println(
"Creating domain model for project: "
+ project.getIdentifier()
+ " (version:"
+ project.getVersion()
+ ")");
// TEST THE MMS CADSR IMPL
DomainModel domainModel = null;
try {
domainModel =
mmsImpl.generateDomainModelForPackages(
project, (List<String>) Arrays.asList(new String[] {"gov.nih.nci.cabio.domain"}));
System.out.println("FOUND A DOMAIN MODEL" + domainModel.getProjectLongName());
for (Iterator iterator =
domainModel.getExposedUMLClassCollection().getUMLClass().iterator();
iterator.hasNext(); ) {
UMLClass type = (UMLClass) iterator.next();
System.out.println("\t" + type.getClassName());
}
} catch (InvalidUMLProjectIndentifier e) {
e.printStackTrace();
}
assertNotNull(domainModel);
} catch (Exception e) {
e.printStackTrace();
fail(ExceptionUtils.getFullStackTrace(e));
}
}
protected boolean handleReceivingRateLimitStatus(RateLimitStatus rateLimitStatus) {
try {
int secondsUntilReset = rateLimitStatus.getSecondsUntilReset();
int remainingHits = rateLimitStatus.getRemainingHits();
if (remainingHits == 0) {
logger.debug("rate status limit service returned 0 for the remaining hits value");
return false;
}
if (secondsUntilReset == 0) {
logger.debug(
"rate status limit service returned 0 for the seconds until reset period value");
return false;
}
int secondsUntilWeCanPullAgain = secondsUntilReset / remainingHits;
long msUntilWeCanPullAgain = secondsUntilWeCanPullAgain * 1000;
logger.debug(
"need to Thread.sleep() "
+ secondsUntilWeCanPullAgain
+ " seconds until the next timeline pull. Have "
+ remainingHits
+ " remaining pull this rate period. The period ends in "
+ secondsUntilReset);
Thread.sleep(msUntilWeCanPullAgain);
} catch (Throwable throwable) {
logger.debug(
"encountered an error when"
+ " trying to refresh the timeline: "
+ ExceptionUtils.getFullStackTrace(throwable));
}
return true;
}
@With({AdminCredentialWrapFilter.class, ConnectToDBFilter.class})
public static Result resetPasswordStep1(String username) {
if (BaasBoxLogger.isTraceEnabled()) BaasBoxLogger.trace("Method Start");
// check and validate input
if (username == null)
return badRequest(
"The 'username' field is missing in the URL, please check the documentation");
if (!UserService.exists(username)) return badRequest("Username " + username + " not found!");
QueryParams criteria =
QueryParams.getInstance().where("user.name=?").params(new String[] {username});
ODocument user;
try {
List<ODocument> users = UserService.getUsers(criteria);
user = UserService.getUsers(criteria).get(0);
ODocument attrObj = user.field(UserDao.ATTRIBUTES_VISIBLE_ONLY_BY_THE_USER);
if (attrObj == null || attrObj.field("email") == null)
return badRequest(
"Cannot reset password, the \"email\" attribute is not defined into the user's private profile");
// if (UserService.checkResetPwdAlreadyRequested(username)) return badRequest("You have
// already requested a reset of your password.");
String appCode = (String) Http.Context.current.get().args.get("appcode");
UserService.sendResetPwdMail(appCode, user);
} catch (PasswordRecoveryException e) {
BaasBoxLogger.warn("resetPasswordStep1", e);
return badRequest(ExceptionUtils.getMessage(e));
} catch (Exception e) {
BaasBoxLogger.warn("resetPasswordStep1", e);
return internalServerError(ExceptionUtils.getFullStackTrace(e));
}
if (BaasBoxLogger.isTraceEnabled()) BaasBoxLogger.trace("Method End");
return ok();
}
@With({UserCredentialWrapFilter.class, ConnectToDBFilter.class})
@BodyParser.Of(BodyParser.Json.class)
public static Result updateProfile() {
Logger.trace("Method Start");
Http.RequestBody body = request().body();
JsonNode bodyJson = body.asJson();
Logger.trace("updateProfile bodyJson: " + bodyJson);
if (bodyJson == null)
return badRequest(
"The body payload cannot be empty. Hint: put in the request header Content-Type: application/json");
// extract the profile fields
JsonNode nonAppUserAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_ANONYMOUS_USER);
JsonNode privateAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_ONLY_BY_THE_USER);
JsonNode friendsAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_FRIENDS_USER);
JsonNode appUsersAttributes = bodyJson.get(UserDao.ATTRIBUTES_VISIBLE_BY_REGISTERED_USER);
if (privateAttributes.has("email")) {
// check if email address is valid
if (!Util.validateEmail((String) privateAttributes.findValuesAsText("email").get(0)))
return badRequest("The email address must be valid.");
}
ODocument profile;
try {
profile =
UserService.updateCurrentProfile(
nonAppUserAttributes, privateAttributes, friendsAttributes, appUsersAttributes);
} catch (Throwable e) {
Logger.warn("updateProfile", e);
if (Play.isDev()) return internalServerError(ExceptionUtils.getFullStackTrace(e));
else return internalServerError(e.getMessage());
}
Logger.trace("Method End");
return ok(prepareResponseToJson(profile));
} // updateProfile
