public boolean linkPlate(Plate o) {
o.linkScreen(this);
if (!plateLinks.contains(o)) {
return plateLinks.add(o);
}
return false;
}
public boolean link(Reference reference, OMEModelObject o) {
boolean wasHandledBySuperClass = super.link(reference, o);
if (wasHandledBySuperClass) {
return true;
}
if (reference instanceof PlateRef) {
Plate o_casted = (Plate) o;
o_casted.linkScreen(this);
if (!plateLinks.contains(o_casted)) {
plateLinks.add(o_casted);
}
return true;
}
if (reference instanceof AnnotationRef) {
Annotation o_casted = (Annotation) o;
o_casted.linkScreen(this);
if (!annotationLinks.contains(o_casted)) {
annotationLinks.add(o_casted);
}
return true;
}
LOGGER.debug("Unable to handle reference of type: {}", reference.getClass());
return false;
}
protected Element asXMLElement(Document document, Element Screen_element) {
// Creating XML block for Screen
if (Screen_element == null) {
Screen_element = document.createElementNS(NAMESPACE, "Screen");
}
if (name != null) {
// Attribute property Name
Screen_element.setAttribute("Name", name.toString());
}
if (protocolDescription != null) {
// Attribute property ProtocolDescription
Screen_element.setAttribute("ProtocolDescription", protocolDescription.toString());
}
if (protocolIdentifier != null) {
// Attribute property ProtocolIdentifier
Screen_element.setAttribute("ProtocolIdentifier", protocolIdentifier.toString());
}
if (reagentSetDescription != null) {
// Attribute property ReagentSetDescription
Screen_element.setAttribute("ReagentSetDescription", reagentSetDescription.toString());
}
if (type != null) {
// Attribute property Type
Screen_element.setAttribute("Type", type.toString());
}
if (id != null) {
// Attribute property ID
Screen_element.setAttribute("ID", id.toString());
}
if (reagentSetIdentifier != null) {
// Attribute property ReagentSetIdentifier
Screen_element.setAttribute("ReagentSetIdentifier", reagentSetIdentifier.toString());
}
if (description != null) {
// Element property Description which is not complex (has no
// sub-elements)
Element description_element = document.createElementNS(NAMESPACE, "Description");
description_element.setTextContent(description.toString());
Screen_element.appendChild(description_element);
}
if (reagents != null) {
// Element property Reagent which is complex (has
// sub-elements) and occurs more than once
for (Reagent reagents_value : reagents) {
Screen_element.appendChild(reagents_value.asXMLElement(document));
}
}
if (plateLinks != null) {
// Reference property PlateRef which occurs more than once
for (Plate plateLinks_value : plateLinks) {
PlateRef o = new PlateRef();
o.setID(plateLinks_value.getID());
Screen_element.appendChild(o.asXMLElement(document));
}
}
if (annotationLinks != null) {
// Reference property AnnotationRef which occurs more than once
for (Annotation annotationLinks_value : annotationLinks) {
AnnotationRef o = new AnnotationRef();
o.setID(annotationLinks_value.getID());
Screen_element.appendChild(o.asXMLElement(document));
}
}
return super.asXMLElement(document, Screen_element);
}
public boolean unlinkPlate(Plate o) {
o.unlinkScreen(this);
return plateLinks.remove(o);
}
protected Element asXMLElement(Document document, Element OME_element) {
// Creating XML block for OME
if (OME_element == null) {
OME_element = document.createElementNS(NAMESPACE, "OME");
}
if (uuid != null) {
// Attribute property UUID
OME_element.setAttribute("UUID", uuid.toString());
}
if (creator != null) {
// Attribute property Creator
OME_element.setAttribute("Creator", creator.toString());
}
if (projects != null) {
// Element property Project which is complex (has
// sub-elements) and occurs more than once
for (Project projects_value : projects) {
OME_element.appendChild(projects_value.asXMLElement(document));
}
}
if (datasets != null) {
// Element property Dataset which is complex (has
// sub-elements) and occurs more than once
for (Dataset datasets_value : datasets) {
OME_element.appendChild(datasets_value.asXMLElement(document));
}
}
if (experiments != null) {
// Element property Experiment which is complex (has
// sub-elements) and occurs more than once
for (Experiment experiments_value : experiments) {
OME_element.appendChild(experiments_value.asXMLElement(document));
}
}
if (plates != null) {
// Element property Plate which is complex (has
// sub-elements) and occurs more than once
for (Plate plates_value : plates) {
OME_element.appendChild(plates_value.asXMLElement(document));
}
}
if (screens != null) {
// Element property Screen which is complex (has
// sub-elements) and occurs more than once
for (Screen screens_value : screens) {
OME_element.appendChild(screens_value.asXMLElement(document));
}
}
if (experimenters != null) {
// Element property Experimenter which is complex (has
// sub-elements) and occurs more than once
for (Experimenter experimenters_value : experimenters) {
OME_element.appendChild(experimenters_value.asXMLElement(document));
}
}
if (experimenterGroups != null) {
// Element property ExperimenterGroup which is complex (has
// sub-elements) and occurs more than once
for (ExperimenterGroup experimenterGroups_value : experimenterGroups) {
OME_element.appendChild(experimenterGroups_value.asXMLElement(document));
}
}
if (instruments != null) {
// Element property Instrument which is complex (has
// sub-elements) and occurs more than once
for (Instrument instruments_value : instruments) {
OME_element.appendChild(instruments_value.asXMLElement(document));
}
}
if (images != null) {
// Element property Image which is complex (has
// sub-elements) and occurs more than once
for (Image images_value : images) {
OME_element.appendChild(images_value.asXMLElement(document));
}
}
if (structuredAnnotations != null) {
// Element property StructuredAnnotations which is complex (has
// sub-elements)
OME_element.appendChild(structuredAnnotations.asXMLElement(document));
}
if (roIs != null) {
// Element property ROI which is complex (has
// sub-elements) and occurs more than once
for (ROI roIs_value : roIs) {
OME_element.appendChild(roIs_value.asXMLElement(document));
}
}
if (binaryOnly != null) {
// Element property BinaryOnly which is complex (has
// sub-elements)
OME_element.appendChild(binaryOnly.asXMLElement(document));
}
return super.asXMLElement(document, OME_element);
}