/**
* Checks if the two entries represent the same publication.
*
* @param one BibEntry
* @param two BibEntry
* @return boolean
*/
public static boolean isDuplicate(BibEntry one, BibEntry two, BibDatabaseMode bibDatabaseMode) {
// First check if they are of the same type - a necessary condition:
if (!one.getType().equals(two.getType())) {
return false;
}
EntryType type = EntryTypes.getTypeOrDefault(one.getType(), bibDatabaseMode);
// The check if they have the same required fields:
java.util.List<String> var = type.getRequiredFieldsFlat();
String[] fields = var.toArray(new String[var.size()]);
double[] req;
if (fields == null) {
req = new double[] {0., 0.};
} else {
req = DuplicateCheck.compareFieldSet(fields, one, two);
}
if (Math.abs(req[0] - DuplicateCheck.duplicateThreshold) > DuplicateCheck.DOUBT_RANGE) {
// Far from the threshold value, so we base our decision on the req. fields only
return req[0] >= DuplicateCheck.duplicateThreshold;
}
// Close to the threshold value, so we take a look at the optional fields, if any:
java.util.List<String> optionalFields = type.getOptionalFields();
fields = optionalFields.toArray(new String[optionalFields.size()]);
if (fields != null) {
double[] opt = DuplicateCheck.compareFieldSet(fields, one, two);
double totValue =
((DuplicateCheck.REQUIRED_WEIGHT * req[0] * req[1]) + (opt[0] * opt[1]))
/ ((req[1] * DuplicateCheck.REQUIRED_WEIGHT) + opt[1]);
return totValue >= DuplicateCheck.duplicateThreshold;
}
return req[0] >= DuplicateCheck.duplicateThreshold;
}
private static int compareSingleField(String field, BibEntry one, BibEntry two) {
String s1 = one.getField(field);
String s2 = two.getField(field);
if (s1 == null) {
if (s2 == null) {
return EMPTY_IN_BOTH;
}
return EMPTY_IN_ONE;
} else if (s2 == null) {
return EMPTY_IN_TWO;
}
if ("author".equals(field) || "editor".equals(field)) {
// Specific for name fields.
// Harmonise case:
String auth1 =
AuthorList.fixAuthor_lastNameOnlyCommas(s1, false).replace(" and ", " ").toLowerCase();
String auth2 =
AuthorList.fixAuthor_lastNameOnlyCommas(s2, false).replace(" and ", " ").toLowerCase();
double similarity = DuplicateCheck.correlateByWords(auth1, auth2);
if (similarity > 0.8) {
return EQUAL;
}
return NOT_EQUAL;
} else if ("pages".equals(field)) {
// Pages can be given with a variety of delimiters, "-", "--", " - ", " -- ".
// We do a replace to harmonize these to a simple "-":
// After this, a simple test for equality should be enough:
s1 = s1.replaceAll("[- ]+", "-");
s2 = s2.replaceAll("[- ]+", "-");
if (s1.equals(s2)) {
return EQUAL;
}
return NOT_EQUAL;
} else if ("journal".equals(field)) {
// We do not attempt to harmonize abbreviation state of the journal names,
// but we remove periods from the names in case they are abbreviated with
// and without dots:
s1 = s1.replace(".", "").toLowerCase();
s2 = s2.replace(".", "").toLowerCase();
double similarity = DuplicateCheck.correlateByWords(s1, s2);
if (similarity > 0.8) {
return EQUAL;
}
return NOT_EQUAL;
} else {
s1 = s1.toLowerCase();
s2 = s2.toLowerCase();
double similarity = DuplicateCheck.correlateByWords(s1, s2);
if (similarity > 0.8) {
return EQUAL;
}
return NOT_EQUAL;
}
}
/**
* Goes through all entries in the given database, and if at least one of them is a duplicate of
* the given entry, as per Util.isDuplicate(BibEntry, BibEntry), the duplicate is returned. The
* search is terminated when the first duplicate is found.
*
* @param database The database to search.
* @param entry The entry of which we are looking for duplicates.
* @return The first duplicate entry found. null if no duplicates are found.
*/
public static Optional<BibEntry> containsDuplicate(
BibDatabase database, BibEntry entry, BibDatabaseMode bibDatabaseMode) {
for (BibEntry other : database.getEntries()) {
if (DuplicateCheck.isDuplicate(entry, other, bibDatabaseMode)) {
return Optional.of(other); // Duplicate found.
}
}
return Optional.empty(); // No duplicate found.
}
private static double[] compareFieldSet(String[] fields, BibEntry one, BibEntry two) {
double res = 0;
double totWeights = 0.;
for (String field : fields) {
double weight;
if (DuplicateCheck.FIELD_WEIGHTS.containsKey(field)) {
weight = DuplicateCheck.FIELD_WEIGHTS.get(field);
} else {
weight = 1.0;
}
totWeights += weight;
int result = DuplicateCheck.compareSingleField(field, one, two);
if (result == EQUAL) {
res += weight;
} else if (result == EMPTY_IN_BOTH) {
totWeights -= weight;
}
}
if (totWeights > 0) {
return new double[] {res / totWeights, totWeights};
}
return new double[] {0.5, 0.0};
}