public void addCollection(MetModelCollection collection) {
availableCollections.put(collection.getName(), collection);
}
public void createNewCollection(MetModel[] models, String name) {
MetModelCollection newCollection = new MetModelCollection(models);
newCollection.setName(name);
this.availableCollections.put(name, newCollection);
}
public void removeCollection(MetModelCollection selected) {
this.availableCollections.remove(selected.getName());
this.saveAll();
}
public void addNewModelsToRepo(File[] sbmlFiles) {
for (File sbml : sbmlFiles) {
MetModel newModel = sbmlParser.parse(sbml, collectionDir); // TODO:check for redundant models
masterCollection.addModel(newModel);
}
}
public void addNewModelsToRepo(File sbml) {
MetModel newModel =
sbmlParser.parse(
sbml, OpenJDKBugOverrides.getCurrentDir()); // TODO:check for redundant models
masterCollection.addModel(newModel);
}