Ejemplo n.º 1
0
 /**
  * Returns a new object indicating the states at the tips (used whether or not History is
  * reconstruction)
  */
 public CharacterDistribution getStatesAtTips(Tree tree) {
   if (observedStates != null) return (CharacterDistribution) observedStates.getAdjustableClone();
   else {
     ContinuousAdjustable d =
         new ContinuousAdjustable(tree.getTaxa(), tree.getTaxa().getNumTaxa());
     d.setItemsAs(this);
     fillDistribution(tree, tree.getRoot(), d);
     return d;
   }
 }
Ejemplo n.º 2
0
 /*..........................................ContinuousHistory................*/
 private void fillDistribution(Tree tree, int node, ContinuousAdjustable dist) {
   if (tree.nodeIsTerminal(node)) {
     int t = tree.taxonNumberOfNode(node);
     for (int i = 0; i < getNumItems(); i++) dist.setState(t, i, getState(node, i));
   } else
     for (int d = tree.firstDaughterOfNode(node); tree.nodeExists(d); d = tree.nextSisterOfNode(d))
       fillDistribution(tree, d, dist);
 }