@Test
public void setReplicationConfig() throws Exception {
ReplicationConfiguration r = new ReplicationConfiguration();
Operator op = new Operator();
op.setOperatorNodeID("test_node");
op.setSoapReplicationURL("http://localhost");
op.setOperatorStatus(OperatorStatusType.NORMAL);
r.getOperator().add(op);
r.setCommunicationGraph(new CommunicationGraph());
r.setRegistryContact(new ReplicationConfiguration.RegistryContact());
r.getRegistryContact().setContact(new Contact());
r.getRegistryContact().getContact().getPersonName().add(new PersonName("test", null));
// r.getCommunicationGraph().getEdge().add(new CommunicationGraph.Edge());
r.getCommunicationGraph().getNode().add("test_node");
JAXB.marshal(r, System.out);
DispositionReport setReplicationNodes = juddi.setReplicationNodes(authInfoRoot, r);
ReplicationConfiguration replicationNodes = juddi.getReplicationNodes(authInfoRoot);
Assert.assertNotNull(replicationNodes.getCommunicationGraph());
Assert.assertNotNull(replicationNodes.getCommunicationGraph().getNode());
Assert.assertEquals("test_node", replicationNodes.getCommunicationGraph().getNode().get(0));
Assert.assertNotNull(replicationNodes.getMaximumTimeToGetChanges());
Assert.assertNotNull(replicationNodes.getMaximumTimeToSyncRegistry());
Assert.assertNotNull(replicationNodes.getTimeOfConfigurationUpdate());
Assert.assertNotNull(replicationNodes.getSerialNumber());
long firstcommit = replicationNodes.getSerialNumber();
r = new ReplicationConfiguration();
r.getOperator().add(op);
r.setCommunicationGraph(new CommunicationGraph());
r.setRegistryContact(new ReplicationConfiguration.RegistryContact());
r.getRegistryContact().setContact(new Contact());
r.getRegistryContact().getContact().getPersonName().add(new PersonName("test", null));
// r.getCommunicationGraph().getEdge().add(new CommunicationGraph.Edge());
r.getCommunicationGraph().getNode().add("test_node");
JAXB.marshal(r, System.out);
setReplicationNodes = juddi.setReplicationNodes(authInfoRoot, r);
replicationNodes = juddi.getReplicationNodes(authInfoRoot);
Assert.assertNotNull(replicationNodes.getCommunicationGraph());
Assert.assertNotNull(replicationNodes.getCommunicationGraph().getNode());
Assert.assertEquals("test_node", replicationNodes.getCommunicationGraph().getNode().get(0));
Assert.assertNotNull(replicationNodes.getMaximumTimeToGetChanges());
Assert.assertNotNull(replicationNodes.getMaximumTimeToSyncRegistry());
Assert.assertNotNull(replicationNodes.getTimeOfConfigurationUpdate());
Assert.assertNotNull(replicationNodes.getSerialNumber());
Assert.assertTrue(firstcommit < replicationNodes.getSerialNumber());
}
private String marshal(Object o) {
StringWriter w = new StringWriter();
JAXB.marshal(o, w);
w.flush();
return w.getBuffer().toString();
}
private Exchange io(Exchange exchange) {
StringWriter writer = new StringWriter();
JAXB.marshal(exchange, writer);
writer.flush();
String xml = writer.toString();
StringReader reader = new StringReader(xml);
return JAXB.unmarshal(reader, Exchange.class);
}
private <T extends Event> T convertConfig(Event theInitialConfig, Class<T> theDesiredClass) {
if (theInitialConfig.getClass().equals(theDesiredClass)) {
return (T) theInitialConfig;
}
StringWriter stringWriter = new StringWriter();
JAXB.marshal(theInitialConfig, stringWriter);
return JAXB.unmarshal(new StringReader(stringWriter.toString()), theDesiredClass);
}
@Test
public void testGetFlightsXml()
throws AirlineException, DatatypeConfigurationException, TransformerException {
GetFlightsRequest request = JAXB.unmarshal(getStream("request1.xml"), GetFlightsRequest.class);
GetFlightsResponse response = endpoint.getFlights(request);
DOMResult domResponse = new DOMResult();
JAXB.marshal(response, domResponse);
XMLUnit.setIgnoreWhitespace(true);
XMLAssert.assertXMLEqual(getDocument("response1.xml"), (Document) domResponse.getNode());
}
@Override
public void execute() throws MojoExecutionException {
try {
Configuration configuration = new Configuration();
configuration.setJdbc(jdbc);
configuration.setGenerator(generator);
StringWriter writer = new StringWriter();
JAXB.marshal(configuration, writer);
getLog().info("Using this configuration:\n" + writer.toString());
GenerationTool.main(configuration);
} catch (Exception ex) {
throw new MojoExecutionException("Error running jOOQ code generation tool", ex);
}
project.addCompileSourceRoot(generator.getTarget().getDirectory());
}
private void flush(File file, Users users) {
BufferedOutputStream bos = null;
try {
bos = new BufferedOutputStream(new FileOutputStream(file));
JAXB.marshal(users, bos);
lastFlushDate = new Date();
} catch (FileNotFoundException ex) {
Logger.getLogger(OfflineServerImpl.class.getName()).log(Level.SEVERE, null, ex);
} finally {
if (bos != null) {
try {
bos.close();
} catch (IOException ex) {
Logger.getLogger(OfflineServerImpl.class.getName()).log(Level.SEVERE, null, ex);
}
}
}
}
public void build(File output, File template, DocumentModel model) throws IOException {
File temporal;
temporal = File.createTempFile(this.getClass().getName() + '.', ".xml");
try {
int result;
JAXB.marshal(model, temporal);
result =
this.launch(
"-build",
template.getAbsolutePath(),
output.getAbsolutePath(),
temporal.getAbsolutePath());
if (result != 0)
throw new IOException(
String.format("failed on build document" + " (process exit with %d)", result));
} finally {
temporal.delete();
}
}
@Override
public void save() {
List<WrappedVertex> vertices = new ArrayList<WrappedVertex>();
for (Vertex vertex : getVertices()) {
if (vertex.isGroup()) {
vertices.add(new WrappedGroup(vertex));
} else {
vertices.add(new WrappedLeafVertex(vertex));
}
}
List<WrappedEdge> edges = new ArrayList<WrappedEdge>();
for (Edge edge : getEdges()) {
WrappedEdge newEdge =
new WrappedEdge(
edge,
new WrappedLeafVertex(m_vertexProvider.getVertex(edge.getSource().getVertex())),
new WrappedLeafVertex(m_vertexProvider.getVertex(edge.getTarget().getVertex())));
edges.add(newEdge);
}
WrappedGraph graph = new WrappedGraph(getEdgeNamespace(), vertices, edges);
JAXB.marshal(graph, new File(getConfigurationFile()));
}
public static String marshal(Object anyObject) {
StringWriter stringWriter = new StringWriter();
JAXB.marshal(anyObject, stringWriter);
return stringWriter.getBuffer().toString();
}
@Override
void marshal(Object output, File outputFile) {
javax.xml.bind.JAXB.marshal(castJaxbObject(output), outputFile);
}
@Override
public String exportConfigToXml() {
StringWriter writer = new StringWriter();
JAXB.marshal(this, writer);
return writer.toString();
}
/**
* Serializes the {@link Wiseml} instance.
*
* @param wiseML the {@link Wiseml} instance to serialize
* @return the serialized WiseML document
*/
@SuppressWarnings("unused")
public static String serialize(final Wiseml wiseML) {
StringWriter writer = new StringWriter();
JAXB.marshal(wiseML, writer);
return writer.toString();
}
private Message doProcess(Message theArg0) throws HL7Exception, ApplicationException {
String encodedMessage = theArg0.encode();
Terser terser = new Terser(theArg0);
String msgType = terser.get("/MSH-9-1");
String msgTrigger = terser.get("/MSH-9-2");
MSH msh = (MSH) theArg0.get("MSH");
ourLog.info("Message is of type " + msgType + "^" + msgTrigger);
List<Failure> failures;
try {
String msgSourceOrg = terser.get("/MSH-3-1");
String sourceOrg =
myContributorConfig.getContributorConfig().getNameOfHspId9004(msgSourceOrg);
ourLog.info("Sending organization from message is {} - {}", msgSourceOrg, sourceOrg);
} catch (Exception e) {
// ignore
}
Converter converter;
try {
converter = new Converter(true);
} catch (JAXBException e2) {
ourLog.error("Failed to convert message: Could not initialize converter", e2);
throw new HL7Exception(e2);
}
String outcome = null;
if ("ORU".equals(msgType) && "R01".equals(msgTrigger)) {
final ORU_R01 oru = (ORU_R01) theArg0;
final List<ClinicalDocumentGroup> documents = converter.convertClinicalDocument(oru);
try {
outcome =
"ORU^R01 message evaluated (containing " + documents.size() + " documents/results)";
// outcome = Persister.persist(documents);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("ADT".equals(msgType)) {
ADT_A01 adt = new ADT_A01();
adt.setParser(myParser);
adt.parse(encodedMessage);
PatientWithVisits pwv = converter.convertPatientWithVisits(adt);
try {
if (pwv != null) {
outcome = "ADT^" + msgTrigger + " message evaluated";
// outcome = Persister.persist(pwv);
} else {
outcome = PROCESSING_FAILED_OUTCOME;
}
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("RDE".equals(msgType) && "O11".equals(msgTrigger)) {
RDE_O11 rde = new RDE_O11();
rde.setParser(myParser);
rde.parse(encodedMessage);
List<MedicationOrder> medOrders = converter.convertMedicationOrder(rde);
try {
outcome =
"RDE^O11 message evaluated (containing " + medOrders.size() + " medication orders)";
// outcome = Persister.persistMedicationOrders(medOrders);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else if ("RAS".equals(msgType) && "O17".equals(msgTrigger)) {
RAS_O17 ras = new RAS_O17();
ras.setParser(myParser);
ras.parse(encodedMessage);
List<MedicationOrderWithAdmins> medOrdersWithAdmins = converter.convertMedicationAdmin(ras);
try {
outcome =
"RAS^O17 message evaluated (containing administration data for "
+ medOrdersWithAdmins.size()
+ " medication orders)";
// outcome = Persister.persistMedicationAdmins(medOrdersWithAdmins);
} catch (final Exception e1) {
throw new HL7Exception(e1);
}
} else {
/*
* Note: If adding processors for additional message types, make
* sure to update the description for F098!!
*/
converter.validateMsh(msh);
converter.addFailure("/MSH-9", FailureCode.F098, msgType + "^" + msgTrigger);
outcome = PROCESSING_FAILED_OUTCOME;
}
if (StringUtils.isBlank(outcome)) {
outcome = PROCESSING_FAILED_OUTCOME;
}
// These are determined from the IDs in the message
SendingSystem sendingSystem = converter.getSendingSystem();
Contributor contributor = converter.getContributorConfig();
// if (contributor == null) {
// contributor = myContributor;
// } else if (contributor != myContributor) {
// converter.addFailure("MSH-3-1", FailureCode.F112,
// msh.getMsh3_SendingApplication().getHd1_NamespaceID().getValue());
// contributor = myContributor;
// }
if (sendingSystem == null) {
throw new ApplicationException(
"Failed to determine sender from message. Please check MSH-3 value");
}
// if (sendingSystem == null ||
// contributor.getSendingSystem9008WithOid(sendingSystem.getCode()) == null) {
// converter.addFailure("MSH-3-2", FailureCode.F113,
// msh.getMsh3_SendingApplication().getHd2_UniversalID().getValue());
// sendingSystem = contributor.getSendingSystem().get(0);
// ourLog.info("Defaulting to first sending system {} because MSH-3-2 was {}",
// sendingSystem.getDescription(),
// msh.getMsh3_SendingApplication().getHd2_UniversalID().getValue());
// }
ourLog.info(
"Converted message from {} - {}", contributor.getName(), sendingSystem.getDescription());
String orgId = sendingSystem.getManagementConsoleOrgId();
if (StringUtils.isBlank(orgId)) {
orgId = contributor.getManagementConsoleOrgId();
}
final CanonicalHl7V2Message canon =
AbstractPojo.createNewCanonicalMessageHl7V2(
encodedMessage,
orgId,
sendingSystem.getManagementConsoleSystemId(),
Listener.INTERFACE_ID,
MessagePhase.INCOMING,
Listener.class,
java.util.logging.Logger.getLogger(Listener.class.getName()));
failures = converter.getFailures();
if (failures.size() > 0) {
String problemDescription = createHtmlProblemDescription(converter);
if (problemDescription.length() > 0) {
canon.setValidationOutcomeDescription(problemDescription);
}
ourLog.info("Message has {} failures", converter.getFailures().size());
} else {
ourLog.info("Message has no validation failures! Outstanding.");
canon.setValidationOutcomeDescription("No issues");
}
if (outcome != null) {
canon.setValidationOutcomeDescription(
canon.getValidationOutcomeDescription() + "<br>Outcome: " + outcome);
} else {
canon.setValidationOutcomeDescription(canon.getValidationOutcomeDescription());
}
// Journal for the source
ourLog.info("Journalling message");
final JournalMessageRequest request = new JournalMessageRequest();
request.setCanonicalHl7V2Message(canon);
try {
AbstractPojo.tryToJournalMessage(myJournalSvc, request);
} catch (InvalidInputException e) {
ourLog.error("Failed to send message to journal", e);
throw new HL7Exception("Failed to process message");
} catch (final sail.wsdl.infrastructure.journalling.UnexpectedErrorException e) {
ourLog.error("Failed to send message to dead letter", e);
throw new HL7Exception("Failed to process message");
} catch (Exception e) {
ourLog.error("Failed to journal message. Moving on", e);
StringWriter w = new StringWriter();
JAXB.marshal(request, w);
ourLog.error("Request was: " + w.toString());
}
// // Journal again for the destination
// canon.setDestination(new OutboundInterface());
// canon.getDestination().setBoxId(canon.getSource().getBoxId());
// canon.getDestination().setDomainId(canon.getSource().getDomainId());
// canon.getDestination().setInterfaceDirection("O");
// canon.getDestination().setOrgId("SIMS");
// canon.getDestination().setSystemId("CGTA_Interim_CDR");
// canon.getDestination().setInterfaceId("All");
// canon.setCurrentMessagePhase(MessagePhase.OUTGOING);
// try {
// myJournalSvc.journalMessage(request);
// } catch (final InvalidInputException e) {
// ourLog.error("Failed to send message to journal", e);
// } catch (final
// sail.wsdl.infrastructure.journalling.UnexpectedErrorException e)
// {
// ourLog.error("Failed to send message to dead letter", e);
// }
try {
ACK ack = (ACK) theArg0.generateACK();
for (final Failure next : converter.getFailures()) {
ERR err = ack.getERR(ack.getERRReps());
err.getErr1_ErrorCodeAndLocation(0).getEld1_SegmentID().setValue(next.getTerserPath());
err.getErr3_HL7ErrorCode().getCwe1_Identifier().setValue(next.getFailureCode().name());
err.getErr6_ApplicationErrorParameter(0).setValue(next.getFieldVal());
err.getErr7_DiagnosticInformation().setValue(next.getMessage());
}
return ack;
} catch (final IOException e) {
throw new HL7Exception(e);
}
}
