public Object getValueAt(int row, int col) {
// PartitionData partition = options.getPartitionDataNoSpecies().get(row);
PartitionData partition = options.getNonTraitsDataList().get(row);
switch (col) {
case 0:
return partition.getName();
case 1:
return partition.getFileName();
case 2:
return "" + partition.getTaxaCount();
case 3:
return "" + partition.getSiteCount(); // sequence length
case 4:
return partition.getDataType();
case 5:
// return partition.getPloidyType();
// case 6:
return partition.getPartitionSubstitutionModel().getName();
case 6:
return partition.getPartitionClockModel().getName();
case 7:
return partition.getPartitionTreeModel().getName();
default:
throw new IllegalArgumentException("unknown column, " + col);
}
}
public void linkModels() {
int[] selRows = dataTable.getSelectedRows();
List<PartitionData> selectedPartitionData = new ArrayList<PartitionData>();
DataType dateType = null;
for (int row : selRows) {
PartitionData partition = options.dataPartitions.get(row);
if (dateType == null) {
dateType = partition.getPartitionSubstitutionModel().getDataType();
} else {
if (partition.getPartitionSubstitutionModel().getDataType() != dateType) {
JOptionPane.showMessageDialog(
this,
"Can only link the models for data partitions \n"
+ "of the same data type (e.g., nucleotides)",
"Unable to link models",
JOptionPane.ERROR_MESSAGE);
}
}
if (!selectedPartitionData.contains(partition)) selectedPartitionData.add(partition);
}
Object[] modelArray =
options.getPartitionSubstitutionModels(dateType, selectedPartitionData).toArray();
if (selectModelDialog == null) {
selectModelDialog = new SelectModelDialog(frame);
}
int result = selectModelDialog.showDialog(modelArray);
if (result != JOptionPane.CANCEL_OPTION) {
PartitionSubstitutionModel model = selectModelDialog.getModel();
if (selectModelDialog.getMakeCopy()) {
model.setName(selectModelDialog.getName());
}
for (PartitionData partition : selectedPartitionData) {
partition.setPartitionSubstitutionModel(model);
}
}
modelsChanged();
fireDataChanged();
repaint();
}
public void unlinkModels() {
int[] selRows = dataTable.getSelectedRows();
for (int row : selRows) {
PartitionData partition = options.dataPartitions.get(row);
PartitionSubstitutionModel model = partition.getPartitionSubstitutionModel();
if (!model.getName().equals(partition.getName())) {
PartitionSubstitutionModel newModel = new PartitionSubstitutionModel(options, partition);
partition.setPartitionSubstitutionModel(newModel);
}
}
modelsChanged();
fireDataChanged();
repaint();
}