/**
* Creates a dialog box, allowing the user to enter the requested width, height, x & y
* coordinates, slice number for a Region Of Interest, option for oval, and option for whether x &
* y coordinates to be centered.
*/
void showDialog() {
Calibration cal = imp.getCalibration();
int digits = 0;
if (scaledUnits && cal.scaled()) digits = 2;
Roi roi = imp.getRoi();
if (roi == null) drawRoi();
GenericDialog gd = new GenericDialog("Specify");
gd.addNumericField("Width:", width, digits);
gd.addNumericField("Height:", height, digits);
gd.addNumericField("X coordinate:", xRoi, digits);
gd.addNumericField("Y coordinate:", yRoi, digits);
if (stackSize > 1) gd.addNumericField("Slice:", iSlice, 0);
gd.addCheckbox("Oval", oval);
gd.addCheckbox("Constrain square/circle", square);
gd.addCheckbox("Centered", centered);
if (cal.scaled()) {
boolean unitsMatch = cal.getXUnit().equals(cal.getYUnit());
String units = unitsMatch ? cal.getUnits() : cal.getXUnit() + " x " + cal.getYUnit();
gd.addCheckbox("Scaled units (" + units + ")", scaledUnits);
}
fields = gd.getNumericFields();
gd.addDialogListener(this);
gd.showDialog();
if (gd.wasCanceled()) {
if (roi == null) imp.deleteRoi();
else // *ALWAYS* restore initial ROI when cancelled
imp.setRoi(roi);
}
}
public void mouseMoved(MouseEvent e) {
// if (ij==null) return;
int sx = e.getX();
int sy = e.getY();
int ox = offScreenX(sx);
int oy = offScreenY(sy);
flags = e.getModifiers();
setCursor(sx, sy, ox, oy);
IJ.setInputEvent(e);
Roi roi = imp.getRoi();
if (roi != null
&& (roi.getType() == Roi.POLYGON
|| roi.getType() == Roi.POLYLINE
|| roi.getType() == Roi.ANGLE)
&& roi.getState() == roi.CONSTRUCTING) {
PolygonRoi pRoi = (PolygonRoi) roi;
pRoi.handleMouseMove(ox, oy);
} else {
if (ox < imageWidth && oy < imageHeight) {
ImageWindow win = imp.getWindow();
// Cursor must move at least 12 pixels before text
// displayed using IJ.showStatus() is overwritten.
if ((sx - sx2) * (sx - sx2) + (sy - sy2) * (sy - sy2) > 144) showCursorStatus = true;
if (win != null && showCursorStatus) win.mouseMoved(ox, oy);
} else IJ.showStatus("");
}
}
/** Sets the cursor based on the current tool and cursor location. */
public void setCursor(int sx, int sy, int ox, int oy) {
xMouse = ox;
yMouse = oy;
mouseExited = false;
Roi roi = imp.getRoi();
ImageWindow win = imp.getWindow();
if (win == null) return;
if (IJ.spaceBarDown()) {
setCursor(handCursor);
return;
}
int id = Toolbar.getToolId();
switch (Toolbar.getToolId()) {
case Toolbar.MAGNIFIER:
setCursor(moveCursor);
break;
case Toolbar.HAND:
setCursor(handCursor);
break;
default: // selection tool
if (id == Toolbar.SPARE1 || id >= Toolbar.SPARE2) {
if (Prefs.usePointerCursor) setCursor(defaultCursor);
else setCursor(crosshairCursor);
} else if (roi != null && roi.getState() != roi.CONSTRUCTING && roi.isHandle(sx, sy) >= 0)
setCursor(handCursor);
else if (Prefs.usePointerCursor
|| (roi != null && roi.getState() != roi.CONSTRUCTING && roi.contains(ox, oy)))
setCursor(defaultCursor);
else setCursor(crosshairCursor);
}
}
void drawAllROIs(Graphics g) {
RoiManager rm = RoiManager.getInstance();
if (rm == null) {
rm = Interpreter.getBatchModeRoiManager();
if (rm != null && rm.getList().getItemCount() == 0) rm = null;
}
if (rm == null) {
// if (showAllList!=null)
// overlay = showAllList;
showAllROIs = false;
repaint();
return;
}
initGraphics(g, null, showAllColor);
Hashtable rois = rm.getROIs();
java.awt.List list = rm.getList();
boolean drawLabels = rm.getDrawLabels();
currentRoi = null;
int n = list.getItemCount();
if (IJ.debugMode) IJ.log("paint: drawing " + n + " \"Show All\" ROIs");
if (labelRects == null || labelRects.length != n) labelRects = new Rectangle[n];
if (!drawLabels) showAllList = new Overlay();
else showAllList = null;
if (imp == null) return;
int currentImage = imp.getCurrentSlice();
int channel = 0, slice = 0, frame = 0;
boolean hyperstack = imp.isHyperStack();
if (hyperstack) {
channel = imp.getChannel();
slice = imp.getSlice();
frame = imp.getFrame();
}
drawNames = Prefs.useNamesAsLabels;
for (int i = 0; i < n; i++) {
String label = list.getItem(i);
Roi roi = (Roi) rois.get(label);
if (roi == null) continue;
if (showAllList != null) showAllList.add(roi);
if (i < 200 && drawLabels && roi == imp.getRoi()) currentRoi = roi;
if (Prefs.showAllSliceOnly && imp.getStackSize() > 1) {
if (hyperstack && roi.getPosition() == 0) {
int c = roi.getCPosition();
int z = roi.getZPosition();
int t = roi.getTPosition();
if ((c == 0 || c == channel) && (z == 0 || z == slice) && (t == 0 || t == frame))
drawRoi(g, roi, drawLabels ? i : -1);
} else {
int position = roi.getPosition();
if (position == 0) position = getSliceNumber(roi.getName());
if (position == 0 || position == currentImage) drawRoi(g, roi, drawLabels ? i : -1);
}
} else drawRoi(g, roi, drawLabels ? i : -1);
}
((Graphics2D) g).setStroke(Roi.onePixelWide);
drawNames = false;
}
public int setup(String arg, ImagePlus imp) {
this.arg = arg;
this.imp = imp;
// return IJ.setupDialog(imp, DOES_8G+DOES_8C+SUPPORTS_MASKING);
if (imp != null) {
Roi roi = imp.getRoi();
if (roi != null && !roi.isArea()) imp.killRoi(); // ignore any line selection
}
int flags = IJ.setupDialog(imp, DOES_ALL - DOES_8C + SUPPORTS_MASKING);
return flags;
}
protected void handleRoiMouseDown(MouseEvent e) {
int sx = e.getX();
int sy = e.getY();
int ox = offScreenX(sx);
int oy = offScreenY(sy);
Roi roi = imp.getRoi();
int handle = roi != null ? roi.isHandle(sx, sy) : -1;
boolean multiPointMode =
roi != null
&& (roi instanceof PointRoi)
&& handle == -1
&& Toolbar.getToolId() == Toolbar.POINT
&& Toolbar.getMultiPointMode();
if (multiPointMode) {
imp.setRoi(((PointRoi) roi).addPoint(ox, oy));
return;
}
setRoiModState(e, roi, handle);
if (roi != null) {
if (handle >= 0) {
roi.mouseDownInHandle(handle, sx, sy);
return;
}
Rectangle r = roi.getBounds();
int type = roi.getType();
if (type == Roi.RECTANGLE
&& r.width == imp.getWidth()
&& r.height == imp.getHeight()
&& roi.getPasteMode() == Roi.NOT_PASTING
&& !(roi instanceof ImageRoi)) {
imp.killRoi();
return;
}
if (roi.contains(ox, oy)) {
if (roi.modState == Roi.NO_MODS) roi.handleMouseDown(sx, sy);
else {
imp.killRoi();
imp.createNewRoi(sx, sy);
}
return;
}
if ((type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE)
&& roi.getState() == roi.CONSTRUCTING) return;
int tool = Toolbar.getToolId();
if ((tool == Toolbar.POLYGON || tool == Toolbar.POLYLINE || tool == Toolbar.ANGLE)
&& !(IJ.shiftKeyDown() || IJ.altKeyDown())) {
imp.killRoi();
return;
}
}
imp.createNewRoi(sx, sy);
}
public void mouseDragged(MouseEvent e) {
int x = e.getX();
int y = e.getY();
xMouse = offScreenX(x);
yMouse = offScreenY(y);
flags = e.getModifiers();
// IJ.log("mouseDragged: "+flags);
if (flags == 0) // workaround for Mac OS 9 bug
flags = InputEvent.BUTTON1_MASK;
if (Toolbar.getToolId() == Toolbar.HAND || IJ.spaceBarDown()) scroll(x, y);
else {
IJ.setInputEvent(e);
Roi roi = imp.getRoi();
if (roi != null) roi.handleMouseDrag(x, y, flags);
}
}
public void run(String arg) {
imp = IJ.getImage();
Roi roi = imp.getRoi();
if (roi != null && !roi.isArea()) imp.killRoi(); // ignore any line selection
ImageProcessor ip = imp.getProcessor();
if (!showDialog(ip)) return;
if (ip.getWidth() > 1 && ip.getHeight() > 1) ip.setInterpolate(interpolate);
else ip.setInterpolate(false);
ip.setBackgroundValue(bgValue);
imp.startTiming();
try {
if (newWindow && imp.getStackSize() > 1 && processStack) createNewStack(imp, ip);
else scale(ip);
} catch (OutOfMemoryError o) {
IJ.outOfMemory("Scale");
}
IJ.showProgress(1.0);
}
// Use double buffer to reduce flicker when drawing complex ROIs.
// Author: Erik Meijering
void paintDoubleBuffered(Graphics g) {
final int srcRectWidthMag = (int) (srcRect.width * magnification);
final int srcRectHeightMag = (int) (srcRect.height * magnification);
if (offScreenImage == null
|| offScreenWidth != srcRectWidthMag
|| offScreenHeight != srcRectHeightMag) {
offScreenImage = createImage(srcRectWidthMag, srcRectHeightMag);
offScreenWidth = srcRectWidthMag;
offScreenHeight = srcRectHeightMag;
}
Roi roi = imp.getRoi();
try {
if (imageUpdated) {
imageUpdated = false;
imp.updateImage();
}
Graphics offScreenGraphics = offScreenImage.getGraphics();
Java2.setBilinearInterpolation(offScreenGraphics, Prefs.interpolateScaledImages);
Image img = imp.getImage();
if (img != null)
offScreenGraphics.drawImage(
img,
0,
0,
srcRectWidthMag,
srcRectHeightMag,
srcRect.x,
srcRect.y,
srcRect.x + srcRect.width,
srcRect.y + srcRect.height,
null);
if (overlay != null) drawOverlay(offScreenGraphics);
if (showAllROIs) drawAllROIs(offScreenGraphics);
if (roi != null) drawRoi(roi, offScreenGraphics);
if (srcRect.width < imageWidth || srcRect.height < imageHeight)
drawZoomIndicator(offScreenGraphics);
if (IJ.debugMode) showFrameRate(offScreenGraphics);
g.drawImage(offScreenImage, 0, 0, null);
} catch (OutOfMemoryError e) {
IJ.outOfMemory("Paint");
}
}
public void mouseReleased(MouseEvent e) {
flags = e.getModifiers();
flags &= ~InputEvent.BUTTON1_MASK; // make sure button 1 bit is not set
flags &= ~InputEvent.BUTTON2_MASK; // make sure button 2 bit is not set
flags &= ~InputEvent.BUTTON3_MASK; // make sure button 3 bit is not set
Roi roi = imp.getRoi();
if (roi != null) {
Rectangle r = roi.getBounds();
int type = roi.getType();
if ((r.width == 0 || r.height == 0)
&& !(type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE || type == Roi.LINE)
&& !(roi instanceof TextRoi)
&& roi.getState() == roi.CONSTRUCTING
&& type != roi.POINT) imp.killRoi();
else {
roi.handleMouseUp(e.getX(), e.getY());
if (roi.getType() == Roi.LINE && roi.getLength() == 0.0) imp.killRoi();
}
}
}
private boolean deleteOverlayRoi(ImagePlus imp) {
if (imp == null) return false;
Overlay overlay = null;
ImageCanvas ic = imp.getCanvas();
if (ic != null) overlay = ic.getShowAllList();
if (overlay == null) overlay = imp.getOverlay();
if (overlay == null) return false;
Roi roi = imp.getRoi();
for (int i = 0; i < overlay.size(); i++) {
Roi roi2 = overlay.get(i);
if (roi2 == roi) {
overlay.remove(i);
imp.deleteRoi();
ic = imp.getCanvas();
if (ic != null) ic.roiManagerSelect(roi, true);
return true;
}
}
return false;
}
protected void handlePopupMenu(MouseEvent e) {
if (disablePopupMenu) return;
if (IJ.debugMode) IJ.log("show popup: " + (e.isPopupTrigger() ? "true" : "false"));
int x = e.getX();
int y = e.getY();
Roi roi = imp.getRoi();
if (roi != null
&& (roi.getType() == Roi.POLYGON
|| roi.getType() == Roi.POLYLINE
|| roi.getType() == Roi.ANGLE)
&& roi.getState() == roi.CONSTRUCTING) {
roi.handleMouseUp(x, y); // simulate double-click to finalize
roi.handleMouseUp(x, y); // polygon or polyline selection
return;
}
PopupMenu popup = Menus.getPopupMenu();
if (popup != null) {
add(popup);
if (IJ.isMacOSX()) IJ.wait(10);
popup.show(this, x, y);
}
}
public void showRois3D() {
registerActiveImage();
if (currentImage == null) return;
// verifier que l'image active a les memes dimentions
Object[] os = this.list.getSelectedValues();
if (os.length == 1) {
mcib3d.geom.Object3D o = ((Object3DGui) os[0]).getObject3D();
currentImage.setSlice((o.getZmax() + o.getZmin()) / 2 + 1);
}
int nSlices = currentImage.getNSlices();
currentROIs = new HashMap<Integer, Roi>(nSlices);
// stores the roi mask to save memory..
if (roiMask == null || !roiMask.sameDimentions(currentImage)) {
roiMask = new ImageByte("mask", currentImage.getWidth(), currentImage.getHeight(), nSlices);
} else {
roiMask.erase();
}
ImageStack maskStack = roiMask.getImageStack();
Object3DGui obj;
for (Object o : os) {
obj = (Object3DGui) o;
obj.getObject3D().draw(maskStack, 255);
}
// roiMask.show();
for (int i = 1; i <= nSlices; i++) {
ImagePlus im = new ImagePlus("mask", maskStack.getProcessor(i));
im.getProcessor().setThreshold(1, 255, ImageProcessor.NO_LUT_UPDATE);
ThresholdToSelection tts = new ThresholdToSelection();
tts.setup("", im);
tts.run(im.getProcessor());
Roi r = im.getRoi();
if (r != null) currentROIs.put(i, r);
}
updateRoi();
}
public void paint(Graphics g) {
Roi roi = imp.getRoi();
if (roi != null || showAllROIs || overlay != null) {
if (roi != null) roi.updatePaste();
if (!IJ.isMacOSX() && imageWidth != 0) {
paintDoubleBuffered(g);
return;
}
}
try {
if (imageUpdated) {
imageUpdated = false;
imp.updateImage();
}
Java2.setBilinearInterpolation(g, Prefs.interpolateScaledImages);
Image img = imp.getImage();
if (img != null)
g.drawImage(
img,
0,
0,
(int) (srcRect.width * magnification),
(int) (srcRect.height * magnification),
srcRect.x,
srcRect.y,
srcRect.x + srcRect.width,
srcRect.y + srcRect.height,
null);
if (overlay != null) drawOverlay(g);
if (showAllROIs) drawAllROIs(g);
if (roi != null) drawRoi(roi, g);
if (srcRect.width < imageWidth || srcRect.height < imageHeight) drawZoomIndicator(g);
if (IJ.debugMode) showFrameRate(g);
} catch (OutOfMemoryError e) {
IJ.outOfMemory("Paint");
}
}
public void run(String arg) {
imp = IJ.getImage();
if (imp == null) return;
stackSize = imp.getStackSize();
Roi roi = imp.getRoi();
Calibration cal = imp.getCalibration();
if (roi != null && roi.getBounds().equals(prevRoi) && cal.pixelWidth == prevPixelWidth)
roi = null;
if (roi != null) {
boolean rectOrOval =
roi != null && (roi.getType() == Roi.RECTANGLE || roi.getType() == Roi.OVAL);
oval = rectOrOval && (roi.getType() == Roi.OVAL); // Handle existing oval ROI
Rectangle r = roi.getBounds();
width = r.width;
height = r.height;
xRoi = r.x;
yRoi = r.y;
if (scaledUnits && cal.scaled()) {
xRoi = xRoi * cal.pixelWidth;
yRoi = yRoi * cal.pixelHeight;
width = width * cal.pixelWidth;
height = height * cal.pixelHeight;
}
if (centered) { // Make xRoi and yRoi consistent when centered mode is active
xRoi += width / 2.0;
yRoi += height / 2.0;
}
} else if (!validDialogValues()) {
width = imp.getWidth() / 2;
height = imp.getHeight() / 2;
xRoi = width / 2;
yRoi = height / 2;
}
iSlice = imp.getCurrentSlice();
showDialog();
}
public void keyPressed(KeyEvent e) {
// if (e.isConsumed()) return;
int keyCode = e.getKeyCode();
IJ.setKeyDown(keyCode);
hotkey = false;
if (keyCode == KeyEvent.VK_CONTROL || keyCode == KeyEvent.VK_SHIFT) return;
char keyChar = e.getKeyChar();
int flags = e.getModifiers();
if (IJ.debugMode)
IJ.log(
"keyPressed: code="
+ keyCode
+ " ("
+ KeyEvent.getKeyText(keyCode)
+ "), char=\""
+ keyChar
+ "\" ("
+ (int) keyChar
+ "), flags="
+ KeyEvent.getKeyModifiersText(flags));
boolean shift = (flags & KeyEvent.SHIFT_MASK) != 0;
boolean control = (flags & KeyEvent.CTRL_MASK) != 0;
boolean alt = (flags & KeyEvent.ALT_MASK) != 0;
boolean meta = (flags & KeyEvent.META_MASK) != 0;
String cmd = null;
ImagePlus imp = WindowManager.getCurrentImage();
boolean isStack = (imp != null) && (imp.getStackSize() > 1);
if (imp != null
&& !control
&& ((keyChar >= 32 && keyChar <= 255) || keyChar == '\b' || keyChar == '\n')) {
Roi roi = imp.getRoi();
if (roi instanceof TextRoi) {
if ((flags & KeyEvent.META_MASK) != 0 && IJ.isMacOSX()) return;
if (alt) {
switch (keyChar) {
case 'u':
case 'm':
keyChar = IJ.micronSymbol;
break;
case 'A':
keyChar = IJ.angstromSymbol;
break;
default:
}
}
((TextRoi) roi).addChar(keyChar);
return;
}
}
// Handle one character macro shortcuts
if (!control && !meta) {
Hashtable macroShortcuts = Menus.getMacroShortcuts();
if (macroShortcuts.size() > 0) {
if (shift) cmd = (String) macroShortcuts.get(new Integer(keyCode + 200));
else cmd = (String) macroShortcuts.get(new Integer(keyCode));
if (cmd != null) {
// MacroInstaller.runMacroCommand(cmd);
commandName = cmd;
MacroInstaller.runMacroShortcut(cmd);
return;
}
}
}
if ((!Prefs.requireControlKey || control || meta) && keyChar != '+') {
Hashtable shortcuts = Menus.getShortcuts();
if (shift) cmd = (String) shortcuts.get(new Integer(keyCode + 200));
else cmd = (String) shortcuts.get(new Integer(keyCode));
}
if (cmd == null) {
switch (keyChar) {
case '<':
case ',':
if (isStack) cmd = "Previous Slice [<]";
break;
case '>':
case '.':
case ';':
if (isStack) cmd = "Next Slice [>]";
break;
case '+':
case '=':
cmd = "In [+]";
break;
case '-':
cmd = "Out [-]";
break;
case '/':
cmd = "Reslice [/]...";
break;
default:
}
}
if (cmd == null) {
switch (keyCode) {
case KeyEvent.VK_TAB:
WindowManager.putBehind();
return;
case KeyEvent.VK_BACK_SPACE: // delete
if (deleteOverlayRoi(imp)) return;
cmd = "Clear";
hotkey = true;
break;
// case KeyEvent.VK_BACK_SLASH: cmd=IJ.altKeyDown()?"Animation Options...":"Start
// Animation"; break;
case KeyEvent.VK_EQUALS:
cmd = "In [+]";
break;
case KeyEvent.VK_MINUS:
cmd = "Out [-]";
break;
case KeyEvent.VK_SLASH:
case 0xbf:
cmd = "Reslice [/]...";
break;
case KeyEvent.VK_COMMA:
case 0xbc:
if (isStack) cmd = "Previous Slice [<]";
break;
case KeyEvent.VK_PERIOD:
case 0xbe:
if (isStack) cmd = "Next Slice [>]";
break;
case KeyEvent.VK_LEFT:
case KeyEvent.VK_RIGHT:
case KeyEvent.VK_UP:
case KeyEvent.VK_DOWN: // arrow keys
if (imp == null) return;
Roi roi = imp.getRoi();
if (IJ.shiftKeyDown() && imp == Orthogonal_Views.getImage()) return;
boolean stackKey = imp.getStackSize() > 1 && (roi == null || IJ.shiftKeyDown());
boolean zoomKey = roi == null || IJ.shiftKeyDown() || IJ.controlKeyDown();
if (stackKey && keyCode == KeyEvent.VK_RIGHT) cmd = "Next Slice [>]";
else if (stackKey && keyCode == KeyEvent.VK_LEFT) cmd = "Previous Slice [<]";
else if (zoomKey
&& keyCode == KeyEvent.VK_DOWN
&& !ignoreArrowKeys(imp)
&& Toolbar.getToolId() < Toolbar.SPARE6) cmd = "Out [-]";
else if (zoomKey
&& keyCode == KeyEvent.VK_UP
&& !ignoreArrowKeys(imp)
&& Toolbar.getToolId() < Toolbar.SPARE6) cmd = "In [+]";
else if (roi != null) {
if ((flags & KeyEvent.ALT_MASK) != 0) roi.nudgeCorner(keyCode);
else roi.nudge(keyCode);
return;
}
break;
case KeyEvent.VK_ESCAPE:
abortPluginOrMacro(imp);
return;
case KeyEvent.VK_ENTER:
WindowManager.toFront(this);
return;
default:
break;
}
}
if (cmd != null && !cmd.equals("")) {
commandName = cmd;
if (cmd.equals("Fill") || cmd.equals("Draw")) hotkey = true;
if (cmd.charAt(0) == MacroInstaller.commandPrefix) MacroInstaller.runMacroShortcut(cmd);
else {
doCommand(cmd);
keyPressedTime = System.currentTimeMillis();
lastKeyCommand = cmd;
}
}
}
String getInfo(ImagePlus imp, ImageProcessor ip) {
String s = new String("\n");
s += "Title: " + imp.getTitle() + "\n";
Calibration cal = imp.getCalibration();
int stackSize = imp.getStackSize();
int channels = imp.getNChannels();
int slices = imp.getNSlices();
int frames = imp.getNFrames();
int digits = imp.getBitDepth() == 32 ? 4 : 0;
if (cal.scaled()) {
String unit = cal.getUnit();
String units = cal.getUnits();
s +=
"Width: "
+ IJ.d2s(imp.getWidth() * cal.pixelWidth, 2)
+ " "
+ units
+ " ("
+ imp.getWidth()
+ ")\n";
s +=
"Height: "
+ IJ.d2s(imp.getHeight() * cal.pixelHeight, 2)
+ " "
+ units
+ " ("
+ imp.getHeight()
+ ")\n";
if (slices > 1)
s += "Depth: " + IJ.d2s(slices * cal.pixelDepth, 2) + " " + units + " (" + slices + ")\n";
double xResolution = 1.0 / cal.pixelWidth;
double yResolution = 1.0 / cal.pixelHeight;
int places = Tools.getDecimalPlaces(xResolution, yResolution);
if (xResolution == yResolution)
s += "Resolution: " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
else {
s += "X Resolution: " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
s += "Y Resolution: " + IJ.d2s(yResolution, places) + " pixels per " + unit + "\n";
}
} else {
s += "Width: " + imp.getWidth() + " pixels\n";
s += "Height: " + imp.getHeight() + " pixels\n";
if (stackSize > 1) s += "Depth: " + slices + " pixels\n";
}
if (stackSize > 1)
s +=
"Voxel size: "
+ d2s(cal.pixelWidth)
+ "x"
+ d2s(cal.pixelHeight)
+ "x"
+ d2s(cal.pixelDepth)
+ " "
+ cal.getUnit()
+ "\n";
else
s +=
"Pixel size: "
+ d2s(cal.pixelWidth)
+ "x"
+ d2s(cal.pixelHeight)
+ " "
+ cal.getUnit()
+ "\n";
s += "ID: " + imp.getID() + "\n";
String zOrigin = stackSize > 1 || cal.zOrigin != 0.0 ? "," + d2s(cal.zOrigin) : "";
s += "Coordinate origin: " + d2s(cal.xOrigin) + "," + d2s(cal.yOrigin) + zOrigin + "\n";
int type = imp.getType();
switch (type) {
case ImagePlus.GRAY8:
s += "Bits per pixel: 8 ";
String lut = "LUT";
if (imp.getProcessor().isColorLut()) lut = "color " + lut;
else lut = "grayscale " + lut;
if (imp.isInvertedLut()) lut = "inverting " + lut;
s += "(" + lut + ")\n";
if (imp.getNChannels() > 1) s += displayRanges(imp);
else s += "Display range: " + (int) ip.getMin() + "-" + (int) ip.getMax() + "\n";
break;
case ImagePlus.GRAY16:
case ImagePlus.GRAY32:
if (type == ImagePlus.GRAY16) {
String sign = cal.isSigned16Bit() ? "signed" : "unsigned";
s += "Bits per pixel: 16 (" + sign + ")\n";
} else s += "Bits per pixel: 32 (float)\n";
if (imp.getNChannels() > 1) s += displayRanges(imp);
else {
s += "Display range: ";
double min = ip.getMin();
double max = ip.getMax();
if (cal.calibrated()) {
min = cal.getCValue((int) min);
max = cal.getCValue((int) max);
}
s += IJ.d2s(min, digits) + " - " + IJ.d2s(max, digits) + "\n";
}
break;
case ImagePlus.COLOR_256:
s += "Bits per pixel: 8 (color LUT)\n";
break;
case ImagePlus.COLOR_RGB:
s += "Bits per pixel: 32 (RGB)\n";
break;
}
double interval = cal.frameInterval;
double fps = cal.fps;
if (stackSize > 1) {
ImageStack stack = imp.getStack();
int slice = imp.getCurrentSlice();
String number = slice + "/" + stackSize;
String label = stack.getShortSliceLabel(slice);
if (label != null && label.length() > 0) label = " (" + label + ")";
else label = "";
if (interval > 0.0 || fps != 0.0) {
s += "Frame: " + number + label + "\n";
if (fps != 0.0) {
String sRate =
Math.abs(fps - Math.round(fps)) < 0.00001 ? IJ.d2s(fps, 0) : IJ.d2s(fps, 5);
s += "Frame rate: " + sRate + " fps\n";
}
if (interval != 0.0)
s +=
"Frame interval: "
+ ((int) interval == interval ? IJ.d2s(interval, 0) : IJ.d2s(interval, 5))
+ " "
+ cal.getTimeUnit()
+ "\n";
} else s += "Image: " + number + label + "\n";
if (imp.isHyperStack()) {
if (channels > 1) s += " Channel: " + imp.getChannel() + "/" + channels + "\n";
if (slices > 1) s += " Slice: " + imp.getSlice() + "/" + slices + "\n";
if (frames > 1) s += " Frame: " + imp.getFrame() + "/" + frames + "\n";
}
if (imp.isComposite()) {
if (!imp.isHyperStack() && channels > 1) s += " Channels: " + channels + "\n";
String mode = ((CompositeImage) imp).getModeAsString();
s += " Composite mode: \"" + mode + "\"\n";
}
}
if (ip.getMinThreshold() == ImageProcessor.NO_THRESHOLD) s += "No Threshold\n";
else {
double lower = ip.getMinThreshold();
double upper = ip.getMaxThreshold();
int dp = digits;
if (cal.calibrated()) {
lower = cal.getCValue((int) lower);
upper = cal.getCValue((int) upper);
dp = cal.isSigned16Bit() ? 0 : 4;
}
s += "Threshold: " + IJ.d2s(lower, dp) + "-" + IJ.d2s(upper, dp) + "\n";
}
ImageCanvas ic = imp.getCanvas();
double mag = ic != null ? ic.getMagnification() : 1.0;
if (mag != 1.0) s += "Magnification: " + IJ.d2s(mag, 2) + "\n";
if (cal.calibrated()) {
s += " \n";
int curveFit = cal.getFunction();
s += "Calibration Function: ";
if (curveFit == Calibration.UNCALIBRATED_OD) s += "Uncalibrated OD\n";
else if (curveFit == Calibration.CUSTOM) s += "Custom lookup table\n";
else s += CurveFitter.fList[curveFit] + "\n";
double[] c = cal.getCoefficients();
if (c != null) {
s += " a: " + IJ.d2s(c[0], 6) + "\n";
s += " b: " + IJ.d2s(c[1], 6) + "\n";
if (c.length >= 3) s += " c: " + IJ.d2s(c[2], 6) + "\n";
if (c.length >= 4) s += " c: " + IJ.d2s(c[3], 6) + "\n";
if (c.length >= 5) s += " c: " + IJ.d2s(c[4], 6) + "\n";
}
s += " Unit: \"" + cal.getValueUnit() + "\"\n";
} else s += "Uncalibrated\n";
FileInfo fi = imp.getOriginalFileInfo();
if (fi != null) {
if (fi.url != null && !fi.url.equals("")) s += "URL: " + fi.url + "\n";
else if (fi.directory != null && fi.fileName != null)
s += "Path: " + fi.directory + fi.fileName + "\n";
}
ImageWindow win = imp.getWindow();
if (win != null) {
Point loc = win.getLocation();
Dimension screen = IJ.getScreenSize();
s +=
"Screen location: "
+ loc.x
+ ","
+ loc.y
+ " ("
+ screen.width
+ "x"
+ screen.height
+ ")\n";
}
Overlay overlay = imp.getOverlay();
if (overlay != null) {
String hidden = imp.getHideOverlay() ? " (hidden)" : " ";
int n = overlay.size();
String elements = n == 1 ? " element" : " elements";
s += "Overlay: " + n + elements + (imp.getHideOverlay() ? " (hidden)" : "") + "\n";
} else s += "No Overlay\n";
Roi roi = imp.getRoi();
if (roi == null) {
if (cal.calibrated()) s += " \n";
s += "No Selection\n";
} else if (roi instanceof EllipseRoi) {
s += "\nElliptical Selection\n";
double[] p = ((EllipseRoi) roi).getParams();
double dx = p[2] - p[0];
double dy = p[3] - p[1];
double major = Math.sqrt(dx * dx + dy * dy);
s += " Major: " + IJ.d2s(major, 2) + "\n";
s += " Minor: " + IJ.d2s(major * p[4], 2) + "\n";
s += " X1: " + IJ.d2s(p[0], 2) + "\n";
s += " Y1: " + IJ.d2s(p[1], 2) + "\n";
s += " X2: " + IJ.d2s(p[2], 2) + "\n";
s += " Y2: " + IJ.d2s(p[3], 2) + "\n";
s += " Aspect ratio: " + IJ.d2s(p[4], 2) + "\n";
} else {
s += " \n";
s += roi.getTypeAsString() + " Selection";
String points = null;
if (roi instanceof PointRoi) {
int npoints = ((PolygonRoi) roi).getNCoordinates();
String suffix = npoints > 1 ? "s)" : ")";
points = " (" + npoints + " point" + suffix;
}
String name = roi.getName();
if (name != null) {
s += " (\"" + name + "\")";
if (points != null) s += "\n " + points;
} else if (points != null) s += points;
s += "\n";
Rectangle r = roi.getBounds();
if (roi instanceof Line) {
Line line = (Line) roi;
s += " X1: " + IJ.d2s(line.x1d * cal.pixelWidth) + "\n";
s += " Y1: " + IJ.d2s(yy(line.y1d, imp) * cal.pixelHeight) + "\n";
s += " X2: " + IJ.d2s(line.x2d * cal.pixelWidth) + "\n";
s += " Y2: " + IJ.d2s(yy(line.y2d, imp) * cal.pixelHeight) + "\n";
} else if (cal.scaled()) {
s += " X: " + IJ.d2s(cal.getX(r.x)) + " (" + r.x + ")\n";
s += " Y: " + IJ.d2s(cal.getY(r.y, imp.getHeight())) + " (" + r.y + ")\n";
s += " Width: " + IJ.d2s(r.width * cal.pixelWidth) + " (" + r.width + ")\n";
s += " Height: " + IJ.d2s(r.height * cal.pixelHeight) + " (" + r.height + ")\n";
} else {
s += " X: " + r.x + "\n";
s += " Y: " + yy(r.y, imp) + "\n";
s += " Width: " + r.width + "\n";
s += " Height: " + r.height + "\n";
}
}
return s;
}
public void mousePressed(MouseEvent e) {
// if (ij==null) return;
showCursorStatus = true;
int toolID = Toolbar.getToolId();
ImageWindow win = imp.getWindow();
if (win != null && win.running2 && toolID != Toolbar.MAGNIFIER) {
if (win instanceof StackWindow) ((StackWindow) win).setAnimate(false);
else win.running2 = false;
return;
}
int x = e.getX();
int y = e.getY();
flags = e.getModifiers();
// IJ.log("Mouse pressed: " + e.isPopupTrigger() + " " + ij.modifiers(flags));
// if (toolID!=Toolbar.MAGNIFIER && e.isPopupTrigger()) {
if (toolID != Toolbar.MAGNIFIER
&& (e.isPopupTrigger() || (!IJ.isMacintosh() && (flags & Event.META_MASK) != 0))) {
handlePopupMenu(e);
return;
}
int ox = offScreenX(x);
int oy = offScreenY(y);
xMouse = ox;
yMouse = oy;
if (IJ.spaceBarDown()) {
// temporarily switch to "hand" tool of space bar down
setupScroll(ox, oy);
return;
}
if (showAllROIs) {
Roi roi = imp.getRoi();
if (!(roi != null && (roi.contains(ox, oy) || roi.isHandle(x, y) >= 0))
&& roiManagerSelect(x, y)) return;
}
if (customRoi && overlay != null) return;
switch (toolID) {
case Toolbar.MAGNIFIER:
if (IJ.shiftKeyDown()) zoomToSelection(ox, oy);
else if ((flags & (Event.ALT_MASK | Event.META_MASK | Event.CTRL_MASK)) != 0) {
// IJ.run("Out");
zoomOut(x, y);
if (getMagnification() < 1.0) imp.repaintWindow();
} else {
// IJ.run("In");
zoomIn(x, y);
if (getMagnification() <= 1.0) imp.repaintWindow();
}
break;
case Toolbar.HAND:
setupScroll(ox, oy);
break;
case Toolbar.DROPPER:
setDrawingColor(ox, oy, IJ.altKeyDown());
break;
case Toolbar.WAND:
Roi roi = imp.getRoi();
if (roi != null && roi.contains(ox, oy)) {
Rectangle r = roi.getBounds();
if (r.width == imageWidth && r.height == imageHeight) imp.killRoi();
else if (!e.isAltDown()) {
handleRoiMouseDown(e);
return;
}
}
if (roi != null) {
int handle = roi.isHandle(x, y);
if (handle >= 0) {
roi.mouseDownInHandle(handle, x, y);
return;
}
}
setRoiModState(e, roi, -1);
String mode = WandToolOptions.getMode();
double tolerance = WandToolOptions.getTolerance();
int npoints = IJ.doWand(ox, oy, tolerance, mode);
if (Recorder.record && npoints > 0) {
if (tolerance == 0.0 && mode.equals("Legacy")) Recorder.record("doWand", ox, oy);
else
Recorder.recordString(
"doWand(" + ox + ", " + oy + ", " + tolerance + ", \"" + mode + "\");\n");
}
break;
case Toolbar.OVAL:
if (Toolbar.getBrushSize() > 0) new RoiBrush();
else handleRoiMouseDown(e);
break;
case Toolbar.SPARE1:
case Toolbar.SPARE2:
case Toolbar.SPARE3:
case Toolbar.SPARE4:
case Toolbar.SPARE5:
case Toolbar.SPARE6:
case Toolbar.SPARE7:
case Toolbar.SPARE8:
case Toolbar.SPARE9:
Toolbar.getInstance().runMacroTool(toolID);
break;
default: // selection tool
handleRoiMouseDown(e);
}
}