/** Method for creating Stream Direction Group */
protected void createStreamDirectionGroup(
int horizontalSpan, int verticalSpan, boolean isBothButton) {
streamDirectionGroup = new Group(shell, SWT.NONE);
streamDirectionGroup.setText("Stream direction");
GridData gridData = new GridData(GridData.FILL, GridData.BEGINNING, false, false);
gridData.horizontalSpan = horizontalSpan;
gridData.verticalSpan = verticalSpan;
streamDirectionGroup.setLayoutData(gridData);
streamDirectionGroup.setLayout(new GridLayout());
// Downstream Radio Button
downstreamButton = new Button(streamDirectionGroup, SWT.RADIO);
downstreamButton.setText("Downstream");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
downstreamButton.setLayoutData(gridData);
// Upstream Radio Button
upstreamButton = new Button(streamDirectionGroup, SWT.RADIO);
upstreamButton.setText("Upstream");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
upstreamButton.setLayoutData(gridData);
// Downstream & Upstream Radio Button
if (isBothButton) {
bothButton = new Button(streamDirectionGroup, SWT.RADIO);
bothButton.setText("Both");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
bothButton.setLayoutData(gridData);
}
}
protected void createLimitTypesGroup() {
GridData gridData; // Group for lengthLimitButton and shortestPlusKButton
Group limitTypeGroup = new Group(shell, SWT.NONE);
limitTypeGroup.setText("Stop distance");
gridData = new GridData(GridData.FILL, GridData.BEGINNING, false, false);
gridData.horizontalSpan = 2;
gridData.verticalSpan = 2;
limitTypeGroup.setLayoutData(gridData);
limitTypeGroup.setLayout(new GridLayout(2, true));
// Length limit radio button
lengthLimitLabel = new Label(limitTypeGroup, SWT.NONE);
lengthLimitLabel.setText("Length limit");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
lengthLimitLabel.setLayoutData(gridData);
// Length limit text
lengthLimit = new Text(limitTypeGroup, SWT.BORDER);
lengthLimit.addKeyListener(keyAdapter);
gridData = new GridData(GridData.FILL, GridData.CENTER, false, false);
lengthLimit.setLayoutData(gridData);
// Shortest+k radio button
shortestPlusKButton = new Button(limitTypeGroup, SWT.CHECK);
shortestPlusKButton.setText("Shortest+k");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
shortestPlusKButton.setLayoutData(gridData);
shortestPlusKButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
shortestPlusK.setEnabled(shortestPlusKButton.getSelection());
}
});
// Shortest+k text
shortestPlusK = new Text(limitTypeGroup, SWT.BORDER);
shortestPlusK.addKeyListener(keyAdapter);
gridData = new GridData(GridData.FILL, GridData.CENTER, false, false);
shortestPlusK.setLayoutData(gridData);
// Strict check box
strictButton = new Button(shell, SWT.CHECK | SWT.WRAP);
strictButton.setText("Ignore source-source/target-target paths");
gridData = new GridData(GridData.CENTER, GridData.CENTER, false, false);
gridData.verticalSpan = 2;
gridData.horizontalSpan = 4;
strictButton.setLayoutData(gridData);
}
private Composite createScrollArea(Composite parent) {
Group container = new Group(parent, SWT.NONE);
GridLayout layout = new GridLayout(2, false);
layout.marginWidth = layout.marginHeight = 6;
container.setLayout(layout);
GridData gd = new GridData(GridData.FILL_HORIZONTAL);
gd.horizontalSpan = 3;
container.setLayoutData(gd);
container.setText(PDEUIMessages.ImportWizard_DetailedPage_filter);
Label filterLabel = new Label(container, SWT.NONE);
filterLabel.setText(PDEUIMessages.ImportWizard_DetailedPage_search);
fFilterText = new Text(container, SWT.BORDER);
fFilterText.setText(""); // $NON-NLS-1$
gd = new GridData(GridData.FILL_HORIZONTAL);
fFilterText.setLayoutData(gd);
return container;
}
/** Method for creating Result View Group */
protected void createResultViewGroup(int horizontalSpan, int verticalSpan) {
resultViewGroup = new Group(shell, SWT.NONE);
resultViewGroup.setText("Show result in");
GridData gridData = new GridData(GridData.FILL, GridData.BEGINNING, false, false);
gridData.horizontalSpan = horizontalSpan;
gridData.verticalSpan = verticalSpan;
resultViewGroup.setLayoutData(gridData);
resultViewGroup.setLayout(new GridLayout());
// Current View Radio Button
currentViewButton = new Button(resultViewGroup, SWT.RADIO);
currentViewButton.setText("Current view");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
currentViewButton.setLayoutData(gridData);
// New View Radio Button
newViewButton = new Button(resultViewGroup, SWT.RADIO);
newViewButton.setText("New view");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, false, false);
newViewButton.setLayoutData(gridData);
}
private void createGroup(Composite parent, String title, String position, Object layout) {
Group comp = new Group(parent, SWT.PUSH | SWT.NO_BACKGROUND | SWT.SHADOW_OUT);
comp.setText(title.length() == 0 ? "\"\"" : title);
comp.setLayoutData(layout != null ? layout : position);
createComp(comp);
}
private Control createArgumentsGroup(Composite parent) {
Composite container = SWTFactory.createComposite(parent, 1, 1, GridData.FILL_BOTH);
SWTFactory.createWrapLabel(container, PDEUIMessages.JavaArgumentsTab_description, 1);
Group programGroup =
SWTFactory.createGroup(
container,
PDEUIMessages.JavaArgumentsTab_progamArgsGroup,
1,
1,
GridData.FILL_HORIZONTAL);
fProgramArgs =
SWTFactory.createText(
programGroup,
SWT.MULTI | SWT.WRAP | SWT.BORDER | SWT.V_SCROLL,
1,
200,
60,
GridData.FILL_BOTH);
fProgramArgs.addModifyListener(
new ModifyListener() {
public void modifyText(ModifyEvent e) {
getTargetDefinition().setProgramArguments(fProgramArgs.getText().trim());
}
});
Composite programButtons =
SWTFactory.createComposite(programGroup, 1, 1, GridData.HORIZONTAL_ALIGN_END, 0, 0);
Button programVars =
SWTFactory.createPushButton(
programButtons,
PDEUIMessages.JavaArgumentsTab_programVariables,
null,
GridData.HORIZONTAL_ALIGN_END);
programVars.addSelectionListener(getVariablesListener(fProgramArgs));
Group vmGroup = new Group(container, SWT.NONE);
vmGroup.setLayout(new GridLayout(1, false));
vmGroup.setLayoutData(new GridData(GridData.FILL_HORIZONTAL));
vmGroup.setText(PDEUIMessages.JavaArgumentsTab_vmArgsGroup);
vmGroup.setFont(container.getFont());
fVMArgs =
SWTFactory.createText(
vmGroup,
SWT.MULTI | SWT.WRAP | SWT.BORDER | SWT.V_SCROLL,
1,
200,
60,
GridData.FILL_BOTH);
fVMArgs.addModifyListener(
new ModifyListener() {
public void modifyText(ModifyEvent e) {
getTargetDefinition().setVMArguments(fVMArgs.getText().trim());
}
});
Composite buttons =
SWTFactory.createComposite(vmGroup, 2, 1, GridData.HORIZONTAL_ALIGN_END, 0, 0);
Button vmArgs =
SWTFactory.createPushButton(
buttons, PDEUIMessages.JavaArgumentsTab_addVMArgs, null, GridData.HORIZONTAL_ALIGN_END);
vmArgs.addSelectionListener(getVMArgsListener(fVMArgs));
Button vmVars =
SWTFactory.createPushButton(
buttons,
PDEUIMessages.JavaArgumentsTab_vmVariables,
null,
GridData.HORIZONTAL_ALIGN_END);
vmVars.addSelectionListener(getVariablesListener(fVMArgs));
return container;
}
protected void createExeCancDefGroup(final QueryOptionsPack opt, int horizontalSpan) {
// Group for execute, cancel and default buttons
exeCancelDefaultGroup = new Group(shell, SWT.NONE);
GridData gridData = new GridData(GridData.FILL, GridData.CENTER, false, false);
gridData.horizontalSpan = horizontalSpan;
exeCancelDefaultGroup.setLayoutData(gridData);
exeCancelDefaultGroup.setLayout(new GridLayout(4, true));
if (forSIF) {
sifTypeButton = new Button(exeCancelDefaultGroup, SWT.NONE);
sifTypeButton.setBackground(new Color(null, 255, 255, 255));
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
sifTypeButton.setLayoutData(gridData);
sifTypeButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
ArrayList<SIFType> selection = new ArrayList<SIFType>(selectedTypes);
ExportToSIFL3Dialog dialog =
new ExportToSIFL3Dialog(
main.getShell(),
org.gvt.model.sifl3.SIFGraph.getPossibleRuleTypes(),
selection);
if (dialog.open()) {
selectedTypes.clear();
selectedTypes.addAll(selection);
updateSIFTypeButtonText();
}
}
});
if (selectedTypes == null) selectedTypes = new ArrayList<SIFType>();
updateSIFTypeButtonText();
}
// Execute Button
executeButton = new Button(exeCancelDefaultGroup, SWT.NONE);
executeButton.setText("Execute");
gridData = new GridData(GridData.END, GridData.CENTER, true, false);
executeButton.setLayoutData(gridData);
executeButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
// if no entity is added, show error
if ((sourceElg != null && getAddedSourceEntities().isEmpty())
|| (sourceST != null && sourceST.getSymbols().isEmpty())) {
MessageDialog.openError(main.getShell(), "Error!", "Add Source Molecule!");
return;
}
if ((targetElg != null && getAddedTargetEntities().isEmpty())
|| (targetST != null && targetST.getSymbols().isEmpty())) {
MessageDialog.openError(main.getShell(), "Error!", "Add Target Molecule!");
return;
}
if (forSIF && selectedTypes.isEmpty()) {
MessageDialog.openError(
main.getShell(), "Error!", "Please select at least one interaction type.");
return;
}
// Check for unknown gene symbols
java.util.List<String> unkwn = getUnknownSymbols();
if (!unkwn.isEmpty()) {
String s = "";
for (String us : unkwn) s += " " + us;
MessageDialog.openError(
main.getShell(),
"Error!",
"Unknown symbol" + (unkwn.size() > 1 ? "s" : "") + ": " + s);
return;
}
// store values in dialog to optionsPack
storeValuesToOptionsPack(opt);
// execute is selected
opt.setCancel(false);
shell.close();
}
});
// Cancel Button
cancelButton = new Button(exeCancelDefaultGroup, SWT.NONE);
gridData = new GridData(GridData.CENTER, GridData.CENTER, true, false);
createCancelButton(gridData);
// Default Button
defaultButton = new Button(exeCancelDefaultGroup, SWT.NONE);
defaultButton.setText("Default");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
defaultButton.setLayoutData(gridData);
defaultButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
// set default values of dialog
setDefaultQueryDialogOptions();
}
});
}