public static void main(String[] args) {
WorkflowProperties props = new WorkflowProperties();
File inputFile =
args.length > 0
? new File(args[0])
: new File(props.getDirectory(), "s288c_mata_1_plus.segments");
try {
DifferentialSegments dsegs = new DifferentialSegments(inputFile);
Collection<DifferentialKey> keys = dsegs.differentialRegions(0, 1);
System.out.println(DifferentialKey.header());
for (DifferentialKey key : keys) {
System.out.println(key.toString());
}
System.out.println(String.format("# Regions: " + keys.size()));
} catch (IOException e) {
e.printStackTrace();
}
}
