private void initSender() {
aa(this, sockType == SocketType.SENDER, "");
sendWindow = 3 * Transport.MAX_PAYLOAD_SIZE;
sendBase = 0;
seqNum = 0;
sendbb = ByteBuffer.allocate(SEND_BUFFER_SIZE);
}
public static void main(String args[]) {
try {
aServer asr = new aServer();
// file channel.
FileInputStream is = new FileInputStream("");
is.read();
FileChannel cha = is.getChannel();
ByteBuffer bf = ByteBuffer.allocate(1024);
bf.flip();
cha.read(bf);
// Path Paths
Path pth = Paths.get("", "");
// Files some static operation.
Files.newByteChannel(pth);
Files.copy(pth, pth);
// file attribute, other different class for dos and posix system.
BasicFileAttributes bas = Files.readAttributes(pth, BasicFileAttributes.class);
bas.size();
} catch (Exception e) {
System.err.println(e);
}
System.out.println("hello ");
}
void isReadable(SelectionKey k) {
EventableChannel ec = (EventableChannel) k.attachment();
long b = ec.getBinding();
if (ec.isWatchOnly()) {
if (ec.isNotifyReadable()) eventCallback(b, EM_CONNECTION_NOTIFY_READABLE, null);
} else {
myReadBuffer.clear();
try {
ec.readInboundData(myReadBuffer);
myReadBuffer.flip();
if (myReadBuffer.limit() > 0) {
if (ProxyConnections != null) {
EventableChannel target = ProxyConnections.get(b);
if (target != null) {
ByteBuffer myWriteBuffer = ByteBuffer.allocate(myReadBuffer.limit());
myWriteBuffer.put(myReadBuffer);
myWriteBuffer.flip();
target.scheduleOutboundData(myWriteBuffer);
} else {
eventCallback(b, EM_CONNECTION_READ, myReadBuffer);
}
} else {
eventCallback(b, EM_CONNECTION_READ, myReadBuffer);
}
}
} catch (IOException e) {
UnboundConnections.add(b);
}
}
}
static boolean check(CharsetDecoder dec, byte[] bytes, boolean direct, int[] flow) {
int inPos = flow[0];
int inLen = flow[1];
int outPos = flow[2];
int outLen = flow[3];
int expedInPos = flow[4];
int expedOutPos = flow[5];
CoderResult expedCR = (flow[6] == 0) ? CoderResult.UNDERFLOW : CoderResult.OVERFLOW;
ByteBuffer bbf;
CharBuffer cbf;
if (direct) {
bbf = ByteBuffer.allocateDirect(inPos + bytes.length);
cbf = ByteBuffer.allocateDirect((outPos + outLen) * 2).asCharBuffer();
} else {
bbf = ByteBuffer.allocate(inPos + bytes.length);
cbf = CharBuffer.allocate(outPos + outLen);
}
bbf.position(inPos);
bbf.put(bytes).flip().position(inPos).limit(inPos + inLen);
cbf.position(outPos);
dec.reset();
CoderResult cr = dec.decode(bbf, cbf, false);
if (cr != expedCR || bbf.position() != expedInPos || cbf.position() != expedOutPos) {
System.out.printf("Expected(direct=%5b): [", direct);
for (int i : flow) System.out.print(" " + i);
System.out.println(
"] CR=" + cr + ", inPos=" + bbf.position() + ", outPos=" + cbf.position());
return false;
}
return true;
}
static byte[] encode(char[] cc, Charset cs, boolean testDirect, Time t) throws Exception {
ByteBuffer bbf;
CharBuffer cbf;
CharsetEncoder enc = cs.newEncoder();
String csn = cs.name();
if (testDirect) {
bbf = ByteBuffer.allocateDirect(cc.length * 4);
cbf = ByteBuffer.allocateDirect(cc.length * 2).asCharBuffer();
cbf.put(cc).flip();
} else {
bbf = ByteBuffer.allocate(cc.length * 4);
cbf = CharBuffer.wrap(cc);
}
CoderResult cr = null;
long t1 = System.nanoTime() / 1000;
for (int i = 0; i < iteration; i++) {
cbf.rewind();
bbf.clear();
enc.reset();
cr = enc.encode(cbf, bbf, true);
}
long t2 = System.nanoTime() / 1000;
t.t = (t2 - t1) / iteration;
if (cr != CoderResult.UNDERFLOW) {
System.out.println("ENC-----------------");
int pos = cbf.position();
System.out.printf(" cr=%s, cbf.pos=%d, cc[pos]=%x%n", cr.toString(), pos, cc[pos] & 0xffff);
throw new RuntimeException("Encoding err: " + csn);
}
byte[] bb = new byte[bbf.position()];
bbf.flip();
bbf.get(bb);
return bb;
}
public static void runTests() {
try {
// SHA1 sha1Jmule = new SHA1();
MessageDigest sha1Sun = MessageDigest.getInstance("SHA-1");
SHA1 sha1Gudy = new SHA1();
// SHA1Az shaGudyResume = new SHA1Az();
ByteBuffer buffer = ByteBuffer.allocate(1024 * 1024);
File dir = new File(dirname);
File[] files = dir.listFiles();
for (int i = 0; i < files.length; i++) {
FileChannel fc = new RandomAccessFile(files[i], "r").getChannel();
System.out.println("Testing " + files[i].getName() + " ...");
while (fc.position() < fc.size()) {
fc.read(buffer);
buffer.flip();
byte[] raw = new byte[buffer.limit()];
System.arraycopy(buffer.array(), 0, raw, 0, raw.length);
sha1Gudy.update(buffer);
sha1Gudy.saveState();
ByteBuffer bb = ByteBuffer.wrap(new byte[56081]);
sha1Gudy.digest(bb);
sha1Gudy.restoreState();
sha1Sun.update(raw);
buffer.clear();
}
byte[] sun = sha1Sun.digest();
sha1Sun.reset();
byte[] gudy = sha1Gudy.digest();
sha1Gudy.reset();
if (Arrays.equals(sun, gudy)) {
System.out.println(" SHA1-Gudy: OK");
} else {
System.out.println(" SHA1-Gudy: FAILED");
}
buffer.clear();
fc.close();
System.out.println();
}
} catch (Throwable e) {
Debug.printStackTrace(e);
}
}
public static byte[] getNBOPort(short p) {
ByteBuffer buf = ByteBuffer.allocate(2);
buf.putShort((short) p);
buf.order(ByteOrder.BIG_ENDIAN);
buf.rewind();
byte[] rtn = new byte[2];
buf.get(rtn);
return rtn;
}
private void init() throws IOException {
messageBuffer = new ArrayList();
receiveBuffer = ByteBuffer.allocate(CAPACITY);
sendBuffer = ByteBuffer.allocate(CAPACITY);
buf = new byte[CAPACITY];
channel = DatagramChannel.open();
channel.configureBlocking(false);
InetAddress host = null;
if (getAddress() != null) {
host = InetAddress.getByAddress(getAddress().getBytes());
}
channel.socket().bind(new InetSocketAddress(host, getPort()));
channel.socket().setReceiveBufferSize(CAPACITY);
certifier = new MessageCertifier(this);
extractor = new MessageExtractor(this);
}
public static byte[] getNBOHost(String h) {
if (h.equals(PEER)) return null;
byte hostBytes[] = h.getBytes();
int len = Array.getLength(hostBytes);
ByteBuffer buf = ByteBuffer.allocate(len);
buf.put(hostBytes);
buf.order(ByteOrder.BIG_ENDIAN);
buf.rewind();
return (buf.array());
}
// creates the header and pads the content returning a new byte[]
// in the proper format. The secret is 4bytes (int), the step
// is 2 bytes (short).
public static byte[] createBuffer(byte[] content, int secret, short step) {
short studentNum = 456; // my student number is 1340456
int paddedSize = content.length;
while (paddedSize % 4 != 0) {
paddedSize++;
}
ByteBuffer bb = ByteBuffer.allocate(HEADER_SIZE + paddedSize);
bb.putInt(content.length);
bb.putInt(secret);
bb.putShort(step);
bb.putShort(studentNum);
bb.put(content);
return bb.array();
}
public EmReactor() {
Timers = new TreeMap<Long, ArrayList<Long>>();
Connections = new HashMap<Long, EventableChannel>();
Acceptors = new HashMap<Long, ServerSocketChannel>();
NewConnections = new ArrayList<Long>();
UnboundConnections = new ArrayList<Long>();
DetachedConnections = new ArrayList<EventableSocketChannel>();
BindingIndex = 0;
loopBreaker = new AtomicBoolean();
loopBreaker.set(false);
myReadBuffer =
ByteBuffer.allocate(
32 * 1024); // don't use a direct buffer. Ruby doesn't seem to like them.
timerQuantum = 98;
}
public final byte[] serialize() {
final byte[] cdata = StringUtils.toUTF8(this.m_criterion);
final int presize = cdata.length;
final ByteBuffer bb = ByteBuffer.allocate(32 + presize);
bb.putInt(this.m_id);
bb.put(this.m_order);
bb.putInt(this.m_gfx);
bb.putInt(cdata.length);
bb.put(cdata);
bb.put((byte) (this.m_success ? 1 : 0));
bb.putInt(this.m_itemId);
bb.putShort(this.m_itemQty);
bb.putInt(this.m_xp);
bb.putInt(this.m_kama);
bb.putInt(this.m_guildPoints);
return bb.array();
}
@FXML
private void Ok_click(ActionEvent event) {
logger.entry();
LogEntry log = new LogEntry("6.16", "Local Delete Object Instance service");
try {
ObjectInstanceHandle instanceHandle =
rtiAmb
.getObjectInstanceHandleFactory()
.decode(
ByteBuffer.allocate(4)
.putInt(Integer.parseInt(ObjectInstanceDesignator.getText()))
.array(),
0);
log.getSuppliedArguments()
.add(
new ClassValuePair(
"Object instance designator",
ObjectInstanceHandle.class,
instanceHandle.toString()));
rtiAmb.localDeleteObjectInstance(instanceHandle);
log.setDescription("Local Object instance deleted successfully");
log.setLogType(LogEntryType.REQUEST);
} catch (FederateNotExecutionMember
| NotConnected
| NumberFormatException
| CouldNotDecode
| RTIinternalError
| OwnershipAcquisitionPending
| FederateOwnsAttributes
| ObjectInstanceNotKnown
| SaveInProgress
| RestoreInProgress ex) {
log.setException(ex);
log.setLogType(LogEntryType.ERROR);
logger.log(Level.ERROR, ex.getMessage(), ex);
} catch (Exception ex) {
log.setException(ex);
log.setLogType(LogEntryType.FATAL);
logger.log(Level.FATAL, ex.getMessage(), ex);
}
logEntries.add(log);
((Stage) OkButton.getScene().getWindow()).close();
logger.exit();
}
static CoderResult encodeCR(char[] cc, Charset cs, boolean testDirect) throws Exception {
ByteBuffer bbf;
CharBuffer cbf;
CharsetEncoder enc = cs.newEncoder();
if (testDirect) {
bbf = ByteBuffer.allocateDirect(cc.length * 4);
cbf = ByteBuffer.allocateDirect(cc.length * 2).asCharBuffer();
cbf.put(cc).flip();
} else {
bbf = ByteBuffer.allocate(cc.length * 4);
cbf = CharBuffer.wrap(cc);
}
CoderResult cr = null;
for (int i = 0; i < iteration; i++) {
cbf.rewind();
bbf.clear();
enc.reset();
cr = enc.encode(cbf, bbf, true);
}
return cr;
}
public final byte[] serialize() {
ByteBuffer bb = null;
try {
final byte[] targetPosition =
(this.m_targetPosition == null) ? new byte[0] : this.m_targetPosition.getBytes("UTF-8");
final byte[] jaugeVarName =
(this.m_jaugeVarName == null) ? new byte[0] : this.m_jaugeVarName.getBytes("UTF-8");
bb = ByteBuffer.allocate(9 + targetPosition.length + 4 + 1 + 4 + jaugeVarName.length);
bb.putInt(this.m_id);
bb.put((byte) (this.m_isChallengeGoal ? 1 : 0));
bb.putInt(targetPosition.length);
bb.put(targetPosition);
bb.put((byte) (this.m_isCountDownJauge ? 1 : 0));
bb.putInt(this.m_jaugeMaxValue);
bb.putInt(jaugeVarName.length);
bb.put(jaugeVarName);
} catch (UnsupportedEncodingException e) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e);
}
return bb.array();
}
/**
* Decode file charset.
*
* @param f File to process.
* @return File charset.
* @throws IOException in case of error.
*/
public static Charset decode(File f) throws IOException {
SortedMap<String, Charset> charsets = Charset.availableCharsets();
String[] firstCharsets = {
Charset.defaultCharset().name(), "US-ASCII", "UTF-8", "UTF-16BE", "UTF-16LE"
};
Collection<Charset> orderedCharsets = U.newLinkedHashSet(charsets.size());
for (String c : firstCharsets)
if (charsets.containsKey(c)) orderedCharsets.add(charsets.get(c));
orderedCharsets.addAll(charsets.values());
try (RandomAccessFile raf = new RandomAccessFile(f, "r")) {
FileChannel ch = raf.getChannel();
ByteBuffer buf = ByteBuffer.allocate(4096);
ch.read(buf);
buf.flip();
for (Charset charset : orderedCharsets) {
CharsetDecoder decoder = charset.newDecoder();
decoder.reset();
try {
decoder.decode(buf);
return charset;
} catch (CharacterCodingException ignored) {
}
}
}
return Charset.defaultCharset();
}
/** {@inheritDoc} */
@Override
public ByteBuffer encode(GridNioSession ses, GridClientMessage msg)
throws IOException, GridException {
assert msg != null;
if (msg instanceof GridTcpRestPacket) return encodeMemcache((GridTcpRestPacket) msg);
else if (msg == PING_MESSAGE) return ByteBuffer.wrap(PING_PACKET);
else {
byte[] data = marshaller.marshal(msg);
assert data.length > 0;
ByteBuffer res = ByteBuffer.allocate(data.length + 5);
res.put(GRIDGAIN_REQ_FLAG);
res.put(U.intToBytes(data.length));
res.put(data);
res.flip();
return res;
}
}
@Override
public byte[] getBinaryData() {
final ArrayList<byte[]> binGroups = new ArrayList<byte[]>(this.m_actionGroups.size());
final ArrayList<byte[]> binRewars = new ArrayList<byte[]>(this.m_rewards.size());
int presize = 0;
presize += 4;
try {
for (final String var : this.m_varMapping) {
presize += 4 + var.getBytes("UTF-8").length;
}
} catch (Exception e) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e);
}
try {
presize += 8;
presize +=
((this.m_joinCriterion != null) ? this.m_joinCriterion.getBytes("UTF-8").length : 0);
presize +=
((this.m_rewardEligibilityCriterion != null)
? this.m_rewardEligibilityCriterion.getBytes("UTF-8").length
: 0);
} catch (Exception e) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e);
}
for (final ActionGroupStorable g : this.m_actionGroups) {
final byte[] bin = g.serialize();
presize += bin.length + 4;
binGroups.add(bin);
}
for (final RewardStorable r : this.m_rewards) {
final byte[] bin = r.serialize();
presize += bin.length + 4;
binRewars.add(bin);
}
try {
presize += 4;
presize += ((this.m_params != null) ? this.m_params.getBytes("UTF-8").length : 0);
} catch (Exception e) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e);
}
final ByteBuffer bb = ByteBuffer.allocate(31 + presize);
bb.putInt(this.m_id);
bb.put(this.m_type);
bb.put(this.m_userType);
bb.put((byte) (this.m_autoTrigger ? 1 : 0));
bb.put((byte) (this.m_isChallenge ? 1 : 0));
bb.put((byte) (this.m_isChaos ? 1 : 0));
bb.putShort(this.m_duration);
bb.putShort(this.m_minUsers);
bb.putShort(this.m_maxUsers);
if (this.m_expirationDate != null) {
bb.putLong(this.m_expirationDate.toLong());
} else {
bb.putLong(0L);
}
try {
if (this.m_params != null) {
final byte[] bytes = this.m_params.getBytes("UTF-8");
bb.putInt(bytes.length);
bb.put(bytes);
} else {
bb.putInt(0);
}
} catch (Exception e2) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e2);
}
try {
bb.putInt(this.m_varMapping.length);
for (final String var2 : this.m_varMapping) {
final byte[] bytes2 = var2.getBytes("UTF-8");
bb.putInt(bytes2.length);
bb.put(bytes2);
}
} catch (Exception e2) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e2);
}
try {
if (this.m_joinCriterion != null) {
final byte[] bytes = this.m_joinCriterion.getBytes("UTF-8");
bb.putInt(bytes.length);
bb.put(bytes);
} else {
bb.putInt(0);
}
if (this.m_rewardEligibilityCriterion != null) {
final byte[] bytes = this.m_rewardEligibilityCriterion.getBytes("UTF-8");
bb.putInt(bytes.length);
bb.put(bytes);
} else {
bb.putInt(0);
}
} catch (Exception e2) {
ScenarioBinaryStorable.m_logger.error((Object) "Exception", (Throwable) e2);
}
bb.putInt(binGroups.size());
for (final byte[] gdata : binGroups) {
bb.putInt(gdata.length);
bb.put(gdata);
}
bb.putInt(binRewars.size());
for (final byte[] rdata : binRewars) {
bb.putInt(rdata.length);
bb.put(rdata);
}
return bb.array();
}
public class MultiPortEcho {
private int ports[];
private ByteBuffer echoBuffer = ByteBuffer.allocate(1024);
public MultiPortEcho(int ports[]) throws IOException {
this.ports = ports;
go();
}
private void go() throws IOException {
// Create a new selector
Selector selector = Selector.open();
// Open a listener on each port, and register each one
// with the selector
for (int i = 0; i < ports.length; ++i) {
ServerSocketChannel ssc = ServerSocketChannel.open();
ssc.configureBlocking(false);
ServerSocket ss = ssc.socket();
InetSocketAddress address = new InetSocketAddress(ports[i]);
ss.bind(address);
SelectionKey key = ssc.register(selector, SelectionKey.OP_ACCEPT);
System.out.println("Going to listen on " + ports[i]);
}
while (true) {
int num = selector.select();
Set selectedKeys = selector.selectedKeys();
Iterator it = selectedKeys.iterator();
while (it.hasNext()) {
SelectionKey key = (SelectionKey) it.next();
if ((key.readyOps() & SelectionKey.OP_ACCEPT) == SelectionKey.OP_ACCEPT) {
// Accept the new connection
ServerSocketChannel ssc = (ServerSocketChannel) key.channel();
SocketChannel sc = ssc.accept();
sc.configureBlocking(false);
// Add the new connection to the selector
SelectionKey newKey = sc.register(selector, SelectionKey.OP_READ);
it.remove();
System.out.println("Got connection from " + sc);
} else if ((key.readyOps() & SelectionKey.OP_READ) == SelectionKey.OP_READ) {
// Read the data
SocketChannel sc = (SocketChannel) key.channel();
// Echo data
int bytesEchoed = 0;
while (true) {
echoBuffer.clear();
int r = sc.read(echoBuffer);
if (r <= 0) {
break;
}
echoBuffer.flip();
sc.write(echoBuffer);
bytesEchoed += r;
}
System.out.println("Echoed " + bytesEchoed + " from " + sc);
it.remove();
}
}
// System.out.println( "going to clear" );
// selectedKeys.clear();
// System.out.println( "cleared" );
}
}
public static void main(String args[]) throws Exception {
int ports[] = new int[] {9001, 9002, 9003};
for (int i = 0; i < args.length; ++i) {
ports[i] = Integer.parseInt(args[i]);
}
new MultiPortEcho(ports);
}
}
public static void main(String[] argv) {
if (argv.length != 3) {
usage();
}
String tempFile = argv[0];
String testFile = argv[1];
int fileSize = Integer.valueOf(argv[2]).intValue();
int exitcode = 0;
int numRead;
int numThisBuf;
int numWritten;
if ((fileSize <= 0) || (fileSize % 4096 != 0)) {
System.out.println("Error: size is not a multiple of 4096!!!!!!");
System.out.println();
usage();
}
try {
int bufSize = 4096;
byte[] inBytes = new byte[bufSize];
byte[] outBytes = new byte[bufSize];
Random ioRandom = new Random(2006);
ioRandom.nextBytes(outBytes);
ByteBuffer inBuf = ByteBuffer.allocate(bufSize);
ByteBuffer outBuf = ByteBuffer.wrap(outBytes);
//
// Loop forever
//
while (true) {
//
// Write the temporary file
//
FileOutputStream fos = new FileOutputStream(tempFile);
FileChannel foc = fos.getChannel();
numWritten = 0;
while (numWritten < fileSize) {
outBuf.clear(); // sets limit to capacity & position to zero
while (outBuf.hasRemaining()) {
numWritten += foc.write(outBuf);
}
}
//
// Move to permanent location
//
FileChannel srcChannel = new FileInputStream(tempFile).getChannel();
FileChannel dstChannel = new FileOutputStream(testFile).getChannel();
dstChannel.transferFrom(srcChannel, 0, srcChannel.size());
srcChannel.close();
dstChannel.close();
boolean success = (new File(tempFile)).delete();
if (!success) {
System.out.println("Warning: unable to delete temporary file");
}
//
// Read and compare
//
FileInputStream fis = new FileInputStream(testFile);
FileChannel fic = fis.getChannel();
for (numRead = 0, numThisBuf = 0; numRead < fileSize; numThisBuf = 0) {
inBuf.rewind(); // Set the buffer position to 0
numThisBuf = fic.read(inBuf);
while (numThisBuf < bufSize) {
numThisBuf += fic.read(inBuf);
}
numRead += bufSize;
inBuf.rewind(); // Set the buffer position to 0
inBuf.get(inBytes);
boolean same = Arrays.equals(inBytes, outBytes);
if (same = false) {
System.out.println("Data read does not equal data written at " + numRead + " bytes");
}
}
}
} catch (FileNotFoundException fnfe) {
fnfe.printStackTrace(System.err);
exitcode = 1;
// break;
} catch (SecurityException se) {
se.printStackTrace(System.err);
exitcode = 1;
// break;
} catch (Throwable t) {
t.printStackTrace(System.err);
exitcode = 1;
}
System.exit(exitcode);
}
/**
* A reactor that selects on some stuff and then notifies some Communicators that things happened
*/
public class Overlord {
private Selector selector;
private Pipe pipe;
private static final Logger log = Logger.getLogger("Overlord");
private ConcurrentLinkedQueue<Communicator> queue;
// This is just used to read the one byte off of pipes informing us that
// there is data on some queue.
ByteBuffer ignored = ByteBuffer.allocate(10);
public Overlord() {
try {
selector = Selector.open();
queue = new ConcurrentLinkedQueue<Communicator>();
// open the pipe and register it with our selector
pipe = Pipe.open();
pipe.sink().configureBlocking(false);
pipe.source().configureBlocking(false);
pipe.source().register(selector, SelectionKey.OP_READ);
} catch (IOException e) {
throw new RuntimeException("select() failed");
}
}
/** Selects on sockets and informs their Communicator when there is something to do. */
public void communicate(int timeout) {
try {
selector.select(timeout);
} catch (IOException e) {
// Not really sure why/when this happens yet
return;
}
Iterator<SelectionKey> keys = selector.selectedKeys().iterator();
while (keys.hasNext()) {
SelectionKey key = keys.next();
keys.remove();
if (!key.isValid()) continue; // WHY
Communicator communicator = (Communicator) key.attachment();
if (key.isReadable()) communicator.onReadable();
if (key.isWritable()) communicator.onWritable();
if (key.isAcceptable()) communicator.onAcceptable();
}
// Go through the queue and handle each communicator
while (!queue.isEmpty()) {
Communicator c = queue.poll();
c.onMemo();
}
}
public void offer(Communicator c) {
queue.offer(c);
}
/** Registers a SelectableChannel */
public boolean register(SelectableChannel sc, Communicator communicator) {
try {
sc.register(selector, sc.validOps(), communicator);
return true;
} catch (Exception e) {
return false;
}
}
/** If the selector is waiting, wake it up */
public void interrupt() {
selector.wakeup();
}
/** Registers a SelectableQueue */
public boolean register(SelectableQueue sq, Communicator communicator) {
try {
// Register the new pipe with the queue. It will write a byte to this
// pipe when the queue is hot, and it will offer its communicator to our
// queue.
sq.register(this, communicator);
return true;
} catch (Exception e) {
e.printStackTrace();
return false;
}
}
}
/**
* Opens new WebRTC data channel using specified parameters.
*
* @param type channel type as defined in control protocol description. Use 0 for "reliable".
* @param prio channel priority. The higher the number, the lower the priority.
* @param reliab Reliability Parameter<br>
* This field is ignored if a reliable channel is used. If a partial reliable channel with
* limited number of retransmissions is used, this field specifies the number of
* retransmissions. If a partial reliable channel with limited lifetime is used, this field
* specifies the maximum lifetime in milliseconds. The following table summarizes this:<br>
* </br>
* <p>+------------------------------------------------+------------------+ | Channel Type |
* Reliability | | | Parameter |
* +------------------------------------------------+------------------+ |
* DATA_CHANNEL_RELIABLE | Ignored | | DATA_CHANNEL_RELIABLE_UNORDERED | Ignored | |
* DATA_CHANNEL_PARTIAL_RELIABLE_REXMIT | Number of RTX | |
* DATA_CHANNEL_PARTIAL_RELIABLE_REXMIT_UNORDERED | Number of RTX | |
* DATA_CHANNEL_PARTIAL_RELIABLE_TIMED | Lifetime in ms | |
* DATA_CHANNEL_PARTIAL_RELIABLE_TIMED_UNORDERED | Lifetime in ms |
* +------------------------------------------------+------------------+
* @param sid SCTP stream id that will be used by new channel (it must not be already used).
* @param label text label for the channel.
* @return new instance of <tt>WebRtcDataStream</tt> that represents opened WebRTC data channel.
* @throws IOException if IO error occurs.
*/
public synchronized WebRtcDataStream openChannel(
int type, int prio, long reliab, int sid, String label) throws IOException {
if (channels.containsKey(sid)) {
throw new IOException("Channel on sid: " + sid + " already exists");
}
// Label Length & Label
byte[] labelBytes;
int labelByteLength;
if (label == null) {
labelBytes = null;
labelByteLength = 0;
} else {
labelBytes = label.getBytes("UTF-8");
labelByteLength = labelBytes.length;
if (labelByteLength > 0xFFFF) labelByteLength = 0xFFFF;
}
// Protocol Length & Protocol
String protocol = WEBRTC_DATA_CHANNEL_PROTOCOL;
byte[] protocolBytes;
int protocolByteLength;
if (protocol == null) {
protocolBytes = null;
protocolByteLength = 0;
} else {
protocolBytes = protocol.getBytes("UTF-8");
protocolByteLength = protocolBytes.length;
if (protocolByteLength > 0xFFFF) protocolByteLength = 0xFFFF;
}
ByteBuffer packet = ByteBuffer.allocate(12 + labelByteLength + protocolByteLength);
// Message open new channel on current sid
// Message Type
packet.put((byte) MSG_OPEN_CHANNEL);
// Channel Type
packet.put((byte) type);
// Priority
packet.putShort((short) prio);
// Reliability Parameter
packet.putInt((int) reliab);
// Label Length
packet.putShort((short) labelByteLength);
// Protocol Length
packet.putShort((short) protocolByteLength);
// Label
if (labelByteLength != 0) {
packet.put(labelBytes, 0, labelByteLength);
}
// Protocol
if (protocolByteLength != 0) {
packet.put(protocolBytes, 0, protocolByteLength);
}
int sentCount = sctpSocket.send(packet.array(), true, sid, WEB_RTC_PPID_CTRL);
if (sentCount != packet.capacity()) {
throw new IOException("Failed to open new chanel on sid: " + sid);
}
WebRtcDataStream channel = new WebRtcDataStream(sctpSocket, sid, label, false);
channels.put(sid, channel);
return channel;
}
private void initReceiver() {
aa(this, sockType == SocketType.RECEIVER, "");
recvBase = 0;
recvbb = ByteBuffer.allocate(RECV_BUFFER_SIZE);
transportBuffer = new HashMap<Integer, Transport>();
}
// returns byte array of content meant to be sent in packet b1
public static byte[] partB(int packet_id, int len) {
ByteBuffer bb = ByteBuffer.allocate(len + 4);
bb.putInt(packet_id);
return bb.array();
}
public void build_bricks() {
ImagePlus imp;
ImagePlus orgimp;
ImageStack stack;
FileInfo finfo;
if (lvImgTitle.isEmpty()) return;
orgimp = WindowManager.getImage(lvImgTitle.get(0));
imp = orgimp;
finfo = imp.getFileInfo();
if (finfo == null) return;
int[] dims = imp.getDimensions();
int imageW = dims[0];
int imageH = dims[1];
int nCh = dims[2];
int imageD = dims[3];
int nFrame = dims[4];
int bdepth = imp.getBitDepth();
double xspc = finfo.pixelWidth;
double yspc = finfo.pixelHeight;
double zspc = finfo.pixelDepth;
double z_aspect = Math.max(xspc, yspc) / zspc;
int orgW = imageW;
int orgH = imageH;
int orgD = imageD;
double orgxspc = xspc;
double orgyspc = yspc;
double orgzspc = zspc;
lv = lvImgTitle.size();
if (filetype == "JPEG") {
for (int l = 0; l < lv; l++) {
if (WindowManager.getImage(lvImgTitle.get(l)).getBitDepth() != 8) {
IJ.error("A SOURCE IMAGE MUST BE 8BIT GLAYSCALE");
return;
}
}
}
// calculate levels
/* int baseXY = 256;
int baseZ = 256;
if (z_aspect < 0.5) baseZ = 128;
if (z_aspect > 2.0) baseXY = 128;
if (z_aspect >= 0.5 && z_aspect < 1.0) baseZ = (int)(baseZ*z_aspect);
if (z_aspect > 1.0 && z_aspect <= 2.0) baseXY = (int)(baseXY/z_aspect);
IJ.log("Z_aspect: " + z_aspect);
IJ.log("BaseXY: " + baseXY);
IJ.log("BaseZ: " + baseZ);
*/
int baseXY = 256;
int baseZ = 128;
int dbXY = Math.max(orgW, orgH) / baseXY;
if (Math.max(orgW, orgH) % baseXY > 0) dbXY *= 2;
int dbZ = orgD / baseZ;
if (orgD % baseZ > 0) dbZ *= 2;
lv = Math.max(log2(dbXY), log2(dbZ)) + 1;
int ww = orgW;
int hh = orgH;
int dd = orgD;
for (int l = 0; l < lv; l++) {
int bwnum = ww / baseXY;
if (ww % baseXY > 0) bwnum++;
int bhnum = hh / baseXY;
if (hh % baseXY > 0) bhnum++;
int bdnum = dd / baseZ;
if (dd % baseZ > 0) bdnum++;
if (bwnum % 2 == 0) bwnum++;
if (bhnum % 2 == 0) bhnum++;
if (bdnum % 2 == 0) bdnum++;
int bw = (bwnum <= 1) ? ww : ww / bwnum + 1 + (ww % bwnum > 0 ? 1 : 0);
int bh = (bhnum <= 1) ? hh : hh / bhnum + 1 + (hh % bhnum > 0 ? 1 : 0);
int bd = (bdnum <= 1) ? dd : dd / bdnum + 1 + (dd % bdnum > 0 ? 1 : 0);
bwlist.add(bw);
bhlist.add(bh);
bdlist.add(bd);
IJ.log("LEVEL: " + l);
IJ.log(" width: " + ww);
IJ.log(" hight: " + hh);
IJ.log(" depth: " + dd);
IJ.log(" bw: " + bw);
IJ.log(" bh: " + bh);
IJ.log(" bd: " + bd);
int xyl2 = Math.max(ww, hh) / baseXY;
if (Math.max(ww, hh) % baseXY > 0) xyl2 *= 2;
if (lv - 1 - log2(xyl2) <= l) {
ww /= 2;
hh /= 2;
}
IJ.log(" xyl2: " + (lv - 1 - log2(xyl2)));
int zl2 = dd / baseZ;
if (dd % baseZ > 0) zl2 *= 2;
if (lv - 1 - log2(zl2) <= l) dd /= 2;
IJ.log(" zl2: " + (lv - 1 - log2(zl2)));
if (l < lv - 1) {
lvImgTitle.add(lvImgTitle.get(0) + "_level" + (l + 1));
IJ.selectWindow(lvImgTitle.get(0));
IJ.run(
"Scale...",
"x=- y=- z=- width="
+ ww
+ " height="
+ hh
+ " depth="
+ dd
+ " interpolation=Bicubic average process create title="
+ lvImgTitle.get(l + 1));
}
}
for (int l = 0; l < lv; l++) {
IJ.log(lvImgTitle.get(l));
}
Document doc = newXMLDocument();
Element root = doc.createElement("BRK");
root.setAttribute("version", "1.0");
root.setAttribute("nLevel", String.valueOf(lv));
root.setAttribute("nChannel", String.valueOf(nCh));
root.setAttribute("nFrame", String.valueOf(nFrame));
doc.appendChild(root);
for (int l = 0; l < lv; l++) {
IJ.showProgress(0.0);
int[] dims2 = imp.getDimensions();
IJ.log(
"W: "
+ String.valueOf(dims2[0])
+ " H: "
+ String.valueOf(dims2[1])
+ " C: "
+ String.valueOf(dims2[2])
+ " D: "
+ String.valueOf(dims2[3])
+ " T: "
+ String.valueOf(dims2[4])
+ " b: "
+ String.valueOf(bdepth));
bw = bwlist.get(l).intValue();
bh = bhlist.get(l).intValue();
bd = bdlist.get(l).intValue();
boolean force_pow2 = false;
/* if(IsPowerOf2(bw) && IsPowerOf2(bh) && IsPowerOf2(bd)) force_pow2 = true;
if(force_pow2){
//force pow2
if(Pow2(bw) > bw) bw = Pow2(bw)/2;
if(Pow2(bh) > bh) bh = Pow2(bh)/2;
if(Pow2(bd) > bd) bd = Pow2(bd)/2;
}
if(bw > imageW) bw = (Pow2(imageW) == imageW) ? imageW : Pow2(imageW)/2;
if(bh > imageH) bh = (Pow2(imageH) == imageH) ? imageH : Pow2(imageH)/2;
if(bd > imageD) bd = (Pow2(imageD) == imageD) ? imageD : Pow2(imageD)/2;
*/
if (bw > imageW) bw = imageW;
if (bh > imageH) bh = imageH;
if (bd > imageD) bd = imageD;
if (bw <= 1 || bh <= 1 || bd <= 1) break;
if (filetype == "JPEG" && (bw < 8 || bh < 8)) break;
Element lvnode = doc.createElement("Level");
lvnode.setAttribute("lv", String.valueOf(l));
lvnode.setAttribute("imageW", String.valueOf(imageW));
lvnode.setAttribute("imageH", String.valueOf(imageH));
lvnode.setAttribute("imageD", String.valueOf(imageD));
lvnode.setAttribute("xspc", String.valueOf(xspc));
lvnode.setAttribute("yspc", String.valueOf(yspc));
lvnode.setAttribute("zspc", String.valueOf(zspc));
lvnode.setAttribute("bitDepth", String.valueOf(bdepth));
root.appendChild(lvnode);
Element brksnode = doc.createElement("Bricks");
brksnode.setAttribute("brick_baseW", String.valueOf(bw));
brksnode.setAttribute("brick_baseH", String.valueOf(bh));
brksnode.setAttribute("brick_baseD", String.valueOf(bd));
lvnode.appendChild(brksnode);
ArrayList<Brick> bricks = new ArrayList<Brick>();
int mw, mh, md, mw2, mh2, md2;
double tx0, ty0, tz0, tx1, ty1, tz1;
double bx0, by0, bz0, bx1, by1, bz1;
for (int k = 0; k < imageD; k += bd) {
if (k > 0) k--;
for (int j = 0; j < imageH; j += bh) {
if (j > 0) j--;
for (int i = 0; i < imageW; i += bw) {
if (i > 0) i--;
mw = Math.min(bw, imageW - i);
mh = Math.min(bh, imageH - j);
md = Math.min(bd, imageD - k);
if (force_pow2) {
mw2 = Pow2(mw);
mh2 = Pow2(mh);
md2 = Pow2(md);
} else {
mw2 = mw;
mh2 = mh;
md2 = md;
}
if (filetype == "JPEG") {
if (mw2 < 8) mw2 = 8;
if (mh2 < 8) mh2 = 8;
}
tx0 = i == 0 ? 0.0d : ((mw2 - mw + 0.5d) / mw2);
ty0 = j == 0 ? 0.0d : ((mh2 - mh + 0.5d) / mh2);
tz0 = k == 0 ? 0.0d : ((md2 - md + 0.5d) / md2);
tx1 = 1.0d - 0.5d / mw2;
if (mw < bw) tx1 = 1.0d;
if (imageW - i == bw) tx1 = 1.0d;
ty1 = 1.0d - 0.5d / mh2;
if (mh < bh) ty1 = 1.0d;
if (imageH - j == bh) ty1 = 1.0d;
tz1 = 1.0d - 0.5d / md2;
if (md < bd) tz1 = 1.0d;
if (imageD - k == bd) tz1 = 1.0d;
bx0 = i == 0 ? 0.0d : (i + 0.5d) / (double) imageW;
by0 = j == 0 ? 0.0d : (j + 0.5d) / (double) imageH;
bz0 = k == 0 ? 0.0d : (k + 0.5d) / (double) imageD;
bx1 = Math.min((i + bw - 0.5d) / (double) imageW, 1.0d);
if (imageW - i == bw) bx1 = 1.0d;
by1 = Math.min((j + bh - 0.5d) / (double) imageH, 1.0d);
if (imageH - j == bh) by1 = 1.0d;
bz1 = Math.min((k + bd - 0.5d) / (double) imageD, 1.0d);
if (imageD - k == bd) bz1 = 1.0d;
int x, y, z;
x = i - (mw2 - mw);
y = j - (mh2 - mh);
z = k - (md2 - md);
bricks.add(
new Brick(
x, y, z, mw2, mh2, md2, 0, 0, tx0, ty0, tz0, tx1, ty1, tz1, bx0, by0, bz0, bx1,
by1, bz1));
}
}
}
Element fsnode = doc.createElement("Files");
lvnode.appendChild(fsnode);
stack = imp.getStack();
int totalbricknum = nFrame * nCh * bricks.size();
int curbricknum = 0;
for (int f = 0; f < nFrame; f++) {
for (int ch = 0; ch < nCh; ch++) {
int sizelimit = bdsizelimit * 1024 * 1024;
int bytecount = 0;
int filecount = 0;
int pd_bufsize = Math.max(sizelimit, bw * bh * bd * bdepth / 8);
byte[] packed_data = new byte[pd_bufsize];
String base_dataname =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f);
String current_dataname = base_dataname + "_data" + filecount;
Brick b_first = bricks.get(0);
if (b_first.z_ != 0) IJ.log("warning");
int st_z = b_first.z_;
int ed_z = b_first.z_ + b_first.d_;
LinkedList<ImageProcessor> iplist = new LinkedList<ImageProcessor>();
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
// ImagePlus test;
// ImageStack tsst;
// test = NewImage.createByteImage("test", imageW, imageH, imageD,
// NewImage.FILL_BLACK);
// tsst = test.getStack();
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
if (ed_z > b.z_ || st_z < b.z_ + b.d_) {
if (b.z_ > st_z) {
for (int s = 0; s < b.z_ - st_z; s++) iplist.pollFirst();
st_z = b.z_;
} else if (b.z_ < st_z) {
IJ.log("warning");
for (int s = st_z - 1; s > b.z_; s--)
iplist.addFirst(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
st_z = b.z_;
}
if (b.z_ + b.d_ > ed_z) {
for (int s = ed_z; s < b.z_ + b.d_; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
ed_z = b.z_ + b.d_;
} else if (b.z_ + b.d_ < ed_z) {
IJ.log("warning");
for (int s = 0; s < ed_z - (b.z_ + b.d_); s++) iplist.pollLast();
ed_z = b.z_ + b.d_;
}
} else {
IJ.log("warning");
iplist.clear();
st_z = b.z_;
ed_z = b.z_ + b.d_;
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
}
if (iplist.size() != b.d_) {
IJ.log("Stack Error");
return;
}
// int zz = st_z;
int bsize = 0;
byte[] bdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Iterator<ImageProcessor> ipite = iplist.iterator();
while (ipite.hasNext()) {
// ImageProcessor tsip = tsst.getProcessor(zz+1);
ImageProcessor ip = ipite.next();
ip.setRoi(b.x_, b.y_, b.w_, b.h_);
if (bdepth == 8) {
byte[] data = (byte[]) ip.crop().getPixels();
System.arraycopy(data, 0, bdata, bsize, data.length);
bsize += data.length;
} else if (bdepth == 16) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
short[] data = (short[]) ip.crop().getPixels();
for (short e : data) buffer.putShort(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
} else if (bdepth == 32) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
float[] data = (float[]) ip.crop().getPixels();
for (float e : data) buffer.putFloat(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
}
}
String filename =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f)
+ "_ID"
+ String.valueOf(i);
int offset = bytecount;
int datasize = bdata.length;
if (filetype == "RAW") {
int dummy = -1;
// do nothing
}
if (filetype == "JPEG" && bdepth == 8) {
try {
DataBufferByte db = new DataBufferByte(bdata, datasize);
Raster raster = Raster.createPackedRaster(db, b.w_, b.h_ * b.d_, 8, null);
BufferedImage img =
new BufferedImage(b.w_, b.h_ * b.d_, BufferedImage.TYPE_BYTE_GRAY);
img.setData(raster);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ImageOutputStream ios = ImageIO.createImageOutputStream(baos);
String format = "jpg";
Iterator<javax.imageio.ImageWriter> iter =
ImageIO.getImageWritersByFormatName("jpeg");
javax.imageio.ImageWriter writer = iter.next();
ImageWriteParam iwp = writer.getDefaultWriteParam();
iwp.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
iwp.setCompressionQuality((float) jpeg_quality * 0.01f);
writer.setOutput(ios);
writer.write(null, new IIOImage(img, null, null), iwp);
// ImageIO.write(img, format, baos);
bdata = baos.toByteArray();
datasize = bdata.length;
} catch (IOException e) {
e.printStackTrace();
return;
}
}
if (filetype == "ZLIB") {
byte[] tmpdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Deflater compresser = new Deflater();
compresser.setInput(bdata);
compresser.setLevel(Deflater.DEFAULT_COMPRESSION);
compresser.setStrategy(Deflater.DEFAULT_STRATEGY);
compresser.finish();
datasize = compresser.deflate(tmpdata);
bdata = tmpdata;
compresser.end();
}
if (bytecount + datasize > sizelimit && bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
filecount++;
current_dataname = base_dataname + "_data" + filecount;
bytecount = 0;
offset = 0;
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
} else {
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
}
Element filenode = doc.createElement("File");
filenode.setAttribute("filename", current_dataname);
filenode.setAttribute("channel", String.valueOf(ch));
filenode.setAttribute("frame", String.valueOf(f));
filenode.setAttribute("brickID", String.valueOf(i));
filenode.setAttribute("offset", String.valueOf(offset));
filenode.setAttribute("datasize", String.valueOf(datasize));
filenode.setAttribute("filetype", String.valueOf(filetype));
fsnode.appendChild(filenode);
curbricknum++;
IJ.showProgress((double) (curbricknum) / (double) (totalbricknum));
}
if (bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
}
}
}
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
Element bricknode = doc.createElement("Brick");
bricknode.setAttribute("id", String.valueOf(i));
bricknode.setAttribute("st_x", String.valueOf(b.x_));
bricknode.setAttribute("st_y", String.valueOf(b.y_));
bricknode.setAttribute("st_z", String.valueOf(b.z_));
bricknode.setAttribute("width", String.valueOf(b.w_));
bricknode.setAttribute("height", String.valueOf(b.h_));
bricknode.setAttribute("depth", String.valueOf(b.d_));
brksnode.appendChild(bricknode);
Element tboxnode = doc.createElement("tbox");
tboxnode.setAttribute("x0", String.valueOf(b.tx0_));
tboxnode.setAttribute("y0", String.valueOf(b.ty0_));
tboxnode.setAttribute("z0", String.valueOf(b.tz0_));
tboxnode.setAttribute("x1", String.valueOf(b.tx1_));
tboxnode.setAttribute("y1", String.valueOf(b.ty1_));
tboxnode.setAttribute("z1", String.valueOf(b.tz1_));
bricknode.appendChild(tboxnode);
Element bboxnode = doc.createElement("bbox");
bboxnode.setAttribute("x0", String.valueOf(b.bx0_));
bboxnode.setAttribute("y0", String.valueOf(b.by0_));
bboxnode.setAttribute("z0", String.valueOf(b.bz0_));
bboxnode.setAttribute("x1", String.valueOf(b.bx1_));
bboxnode.setAttribute("y1", String.valueOf(b.by1_));
bboxnode.setAttribute("z1", String.valueOf(b.bz1_));
bricknode.appendChild(bboxnode);
}
if (l < lv - 1) {
imp = WindowManager.getImage(lvImgTitle.get(l + 1));
int[] newdims = imp.getDimensions();
imageW = newdims[0];
imageH = newdims[1];
imageD = newdims[3];
xspc = orgxspc * ((double) orgW / (double) imageW);
yspc = orgyspc * ((double) orgH / (double) imageH);
zspc = orgzspc * ((double) orgD / (double) imageD);
bdepth = imp.getBitDepth();
}
}
File newXMLfile = new File(directory + basename + ".vvd");
writeXML(newXMLfile, doc);
for (int l = 1; l < lv; l++) {
imp = WindowManager.getImage(lvImgTitle.get(l));
imp.changes = false;
imp.close();
}
}