public static boolean generateHandler(Registry configSystemRegistry, String resourceFullPath)
throws RegistryException, XMLStreamException {
RegistryContext registryContext = configSystemRegistry.getRegistryContext();
if (registryContext == null) {
return false;
}
Resource resource = configSystemRegistry.get(resourceFullPath);
if (resource != null) {
String content = null;
if (resource.getContent() != null) {
content = RegistryUtils.decodeBytes((byte[]) resource.getContent());
}
if (content != null) {
OMElement handler = AXIOMUtil.stringToOM(content);
if (handler != null) {
OMElement dummy = OMAbstractFactory.getOMFactory().createOMElement("dummy", null);
dummy.addChild(handler);
try {
configSystemRegistry.beginTransaction();
boolean status =
RegistryConfigurationProcessor.updateHandler(
dummy,
configSystemRegistry.getRegistryContext(),
HandlerLifecycleManager.USER_DEFINED_HANDLER_PHASE);
configSystemRegistry.commitTransaction();
return status;
} catch (Exception e) {
configSystemRegistry.rollbackTransaction();
throw new RegistryException("Unable to add handler", e);
}
}
}
}
return false;
}
public static boolean addHandler(Registry configSystemRegistry, String payload)
throws RegistryException, XMLStreamException {
String name;
OMElement element = AXIOMUtil.stringToOM(payload);
if (element != null) {
name = element.getAttributeValue(new QName("class"));
} else return false;
if (isHandlerNameInUse(name))
throw new RegistryException("The added handler name is already in use!");
String path = getContextRoot() + name;
Resource resource;
if (!handlerExists(configSystemRegistry, name)) {
resource = new ResourceImpl();
} else {
throw new RegistryException("The added handler name is already in use!");
}
resource.setContent(payload);
try {
configSystemRegistry.beginTransaction();
configSystemRegistry.put(path, resource);
generateHandler(configSystemRegistry, path);
configSystemRegistry.commitTransaction();
} catch (Exception e) {
configSystemRegistry.rollbackTransaction();
throw new RegistryException("Unable to generate handler", e);
}
return true;
}
/** Return a list of all tests of the given type, according to the current filters */
public List<Resource> findTestsOfType(Resource testType) {
ArrayList<Resource> result = new ArrayList<>();
StmtIterator si = testDefinitions.listStatements(null, RDF.type, testType);
while (si.hasNext()) {
Resource test = si.nextStatement().getSubject();
boolean accept = true;
// Check test status
Literal status = (Literal) test.getProperty(RDFTest.status).getObject();
if (approvedOnly) {
accept = status.getString().equals(STATUS_FLAGS[0]);
} else {
accept = false;
for (String STATUS_FLAG : STATUS_FLAGS) {
if (status.getString().equals(STATUS_FLAG)) {
accept = true;
break;
}
}
}
// Check for blocked tests
for (String BLOCKED_TEST : BLOCKED_TESTS) {
if (BLOCKED_TEST.equals(test.toString())) {
accept = false;
}
}
// End of filter tests
if (accept) {
result.add(test);
}
}
return result;
}
public static void testEnum() throws Exception {
Builder b = new Builder();
b.addClasspath(new File("bin"));
b.setProperty("Export-Package", "test.metatype");
b.setProperty("-metatype", "*");
b.build();
assertEquals(0, b.getErrors().size());
assertEquals(0, b.getWarnings().size());
Resource r = b.getJar().getResource("OSGI-INF/metatype/test.metatype.MetatypeTest$Enums.xml");
IO.copy(r.openInputStream(), System.err);
Document d = db.parse(r.openInputStream());
assertEquals(
"http://www.osgi.org/xmlns/metatype/v1.1.0", d.getDocumentElement().getNamespaceURI());
Properties p = new Properties();
p.setProperty("r", "requireConfiguration");
p.setProperty("i", "ignoreConfiguration");
p.setProperty("o", "optionalConfiguration");
Enums enums = Configurable.createConfigurable(Enums.class, (Map<Object, Object>) p);
assertEquals(Enums.X.requireConfiguration, enums.r());
assertEquals(Enums.X.ignoreConfiguration, enums.i());
assertEquals(Enums.X.optionalConfiguration, enums.o());
}
private static void main2(String[] args) {
Config.cmdline(args);
try {
javabughack();
} catch (InterruptedException e) {
return;
}
setupres();
MainFrame f = new MainFrame(null);
if (Utils.getprefb("fullscreen", false)) f.setfs();
f.mt.start();
try {
f.mt.join();
} catch (InterruptedException e) {
f.g.interrupt();
return;
}
dumplist(Resource.remote().loadwaited(), Config.loadwaited);
dumplist(Resource.remote().cached(), Config.allused);
if (ResCache.global != null) {
try {
Writer w = new OutputStreamWriter(ResCache.global.store("tmp/allused"), "UTF-8");
try {
Resource.dumplist(Resource.remote().used(), w);
} finally {
w.close();
}
} catch (IOException e) {
}
}
System.exit(0);
}
public static String RenderTemplatePage(Bindings b, String templateName) throws IOException {
MediaType mt = MediaType.TEXT_HTML;
Resource config = model.createResource("eh:/root");
Mode prefixMode = Mode.PreferPrefixes;
ShortnameService sns = new StandardShortnameService();
List<Resource> noResults = CollectionUtils.list(root.inModel(model));
Graph resultGraph = graphModel.getGraph();
resultGraph.getPrefixMapping().setNsPrefix("api", API.NS);
resultGraph.add(Triple.create(root.asNode(), API.items.asNode(), RDF.nil.asNode()));
APIResultSet rs = new APIResultSet(resultGraph, noResults, true, true, "details", View.ALL);
VelocityRenderer vr = new VelocityRenderer(mt, null, config, prefixMode, sns);
VelocityRendering vx = new VelocityRendering(b, rs, vr);
VelocityEngine ve = vx.createVelocityEngine();
VelocityContext vc = vx.createVelocityContext(b);
ByteArrayOutputStream bos = new ByteArrayOutputStream();
Writer w = new OutputStreamWriter(bos, "UTF-8");
Template t = ve.getTemplate(templateName);
t.merge(vc, w);
w.close();
return bos.toString();
}
private void copy(File workspaceDir, InputStream in, Pattern glob, boolean overwrite)
throws Exception {
Jar jar = new Jar("dot", in);
try {
for (Entry<String, Resource> e : jar.getResources().entrySet()) {
String path = e.getKey();
bnd.trace("path %s", path);
if (glob != null && !glob.matcher(path).matches()) continue;
Resource r = e.getValue();
File dest = Processor.getFile(workspaceDir, path);
if (overwrite
|| !dest.isFile()
|| dest.lastModified() < r.lastModified()
|| r.lastModified() <= 0) {
bnd.trace("copy %s to %s", path, dest);
File dp = dest.getParentFile();
if (!dp.exists() && !dp.mkdirs()) {
throw new IOException("Could not create directory " + dp);
}
IO.copy(r.openInputStream(), dest);
}
}
} finally {
jar.close();
}
}
/**
* Invoke a script from the command line.
*
* @param scriptResource the script resource of path
* @param scriptArgs an array of command line arguments
* @return the return value
* @throws IOException an I/O related error occurred
* @throws JavaScriptException the script threw an error during compilation or execution
*/
public Object runScript(Object scriptResource, String... scriptArgs)
throws IOException, JavaScriptException {
Resource resource;
if (scriptResource instanceof Resource) {
resource = (Resource) scriptResource;
} else if (scriptResource instanceof String) {
resource = findResource((String) scriptResource, null, null);
} else {
throw new IOException("Unsupported script resource: " + scriptResource);
}
if (!resource.exists()) {
throw new FileNotFoundException(scriptResource.toString());
}
Context cx = contextFactory.enterContext();
try {
Object retval;
Map<Trackable, ReloadableScript> scripts = getScriptCache(cx);
commandLineArgs = Arrays.asList(scriptArgs);
ReloadableScript script = new ReloadableScript(resource, this);
scripts.put(resource, script);
mainScope = new ModuleScope(resource.getModuleName(), resource, globalScope, mainWorker);
retval = mainWorker.evaluateScript(cx, script, mainScope);
mainScope.updateExports();
return retval instanceof Wrapper ? ((Wrapper) retval).unwrap() : retval;
} finally {
Context.exit();
}
}
/**
* Search for a resource in a local path, or the main repository path.
*
* @param path the resource name
* @param loaders optional list of module loaders
* @param localRoot a repository to look first
* @return the resource
* @throws IOException if an I/O error occurred
*/
public Resource findResource(String path, ModuleLoader[] loaders, Repository localRoot)
throws IOException {
// Note: as an extension to the CommonJS modules API
// we allow absolute module paths for resources
File file = new File(path);
if (file.isAbsolute()) {
Resource res;
outer:
if (loaders != null) {
// loaders must contain at least one loader
assert loaders.length > 0 && loaders[0] != null;
for (ModuleLoader loader : loaders) {
res = new FileResource(path + loader.getExtension());
if (res.exists()) {
break outer;
}
}
res = new FileResource(path + loaders[0].getExtension());
} else {
res = new FileResource(file);
}
res.setAbsolute(true);
return res;
} else if (localRoot != null && (path.startsWith("./") || path.startsWith("../"))) {
String newpath = localRoot.getRelativePath() + path;
return findResource(newpath, loaders, null);
} else {
return config.getResource(normalizePath(path), loaders);
}
}
public static String getHandlerConfiguration(Registry configSystemRegistry, String name)
throws RegistryException, XMLStreamException {
String path = getContextRoot() + name;
Resource resource;
if (handlerExists(configSystemRegistry, name)) {
resource = configSystemRegistry.get(path);
return RegistryUtils.decodeBytes((byte[]) resource.getContent());
}
return null;
}
public Folder getFolder(String path)
throws IOException, com.ettrema.httpclient.HttpException, NotAuthorizedException,
BadRequestException {
Resource res = find(path);
if (res instanceof Folder) {
return (Folder) res;
} else {
throw new RuntimeException("Not a folder: " + res.href());
}
}
/**
* Example the conclusions graph for introduction of restrictions which require a comprehension
* rewrite and declare new (anon) classes for those restrictions.
*/
public void comprehensionAxioms(Model premises, Model conclusions) {
// Comprehend all restriction declarations and note them in a map
Map<Resource, Resource> comprehension = new HashMap<>();
StmtIterator ri = conclusions.listStatements(null, RDF.type, OWL.Restriction);
while (ri.hasNext()) {
Resource restriction = ri.nextStatement().getSubject();
StmtIterator pi = restriction.listProperties(OWL.onProperty);
while (pi.hasNext()) {
Resource prop = (Resource) pi.nextStatement().getObject();
StmtIterator vi = restriction.listProperties();
while (vi.hasNext()) {
Statement rs = vi.nextStatement();
if (!rs.getPredicate().equals(OWL.onProperty)) {
// Have a restriction on(prop) of type rs in the conclusions
// So assert a premise that such a restriction could exisit
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Restriction)
.addProperty(OWL.onProperty, prop)
.addProperty(rs.getPredicate(), rs.getObject());
comprehension.put(restriction, comp);
}
}
}
}
// Comprehend any intersectionOf lists. Introduce anon class which has the form
// of the intersection expression.
// Rewrite queries of the form (X intersectionOf Y) to the form
// (X equivalentClass ?CC) (?CC intersectionOf Y)
StmtIterator ii = conclusions.listStatements(null, OWL.intersectionOf, (RDFNode) null);
List<Statement> intersections = new ArrayList<>();
while (ii.hasNext()) {
intersections.add(ii.nextStatement());
}
for (Statement is : intersections) {
// Declare in the premises that such an intersection exists
Resource comp =
premises
.createResource()
.addProperty(RDF.type, OWL.Class)
.addProperty(
OWL.intersectionOf, mapList(premises, (Resource) is.getObject(), comprehension));
// Rewrite the conclusions to be a test for equivalence between the class being
// queried and the comprehended interesection
conclusions.remove(is);
conclusions.add(is.getSubject(), OWL.equivalentClass, comp);
}
// Comprehend any oneOf lists
StmtIterator io = conclusions.listStatements(null, OWL.oneOf, (RDFNode) null);
while (io.hasNext()) {
Statement s = io.nextStatement();
Resource comp = premises.createResource().addProperty(OWL.oneOf, s.getObject());
}
}
/** Run a single test of any sort, return true if the test succeeds. */
public boolean doRunTest(Resource test) throws IOException {
if (test.hasProperty(RDF.type, OWLTest.PositiveEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.OWLforOWLTest)
|| test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.TrueTest)) {
// Entailment tests
boolean processImports = test.hasProperty(RDF.type, OWLTest.ImportEntailmentTest);
Model premises = getDoc(test, RDFTest.premiseDocument, processImports);
Model conclusions = getDoc(test, RDFTest.conclusionDocument);
comprehensionAxioms(premises, conclusions);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(premises.getGraph());
if (printProfile) {
((FBRuleInfGraph) graph).resetLPProfile(true);
}
Model result = ModelFactory.createModelForGraph(graph);
boolean correct = WGReasonerTester.testConclusions(conclusions.getGraph(), result.getGraph());
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
if (printProfile) {
((FBRuleInfGraph) graph).printLPProfile();
}
if (test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)) {
correct = !correct;
}
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.InconsistencyTest)) {
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = !graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else if (test.hasProperty(RDF.type, OWLTest.ConsistencyTest)) {
// Not used normally becase we are not complete enough to prove consistency
// System.out.println("Starting: " + test);
Model input = getDoc(test, RDFTest.inputDocument);
long t1 = System.currentTimeMillis();
InfGraph graph = reasoner.bind(input.getGraph());
boolean correct = graph.validate().isValid();
long t2 = System.currentTimeMillis();
lastTestDuration = t2 - t1;
return correct;
} else {
for (StmtIterator i = test.listProperties(RDF.type); i.hasNext(); ) {
System.out.println("Test type = " + i.nextStatement().getObject());
}
throw new ReasonerException("Unknown test type");
}
}
@Override
public void write(final OutputStream out) throws IOException, Exception {
OutputStream unclosable =
new FilterOutputStream(out) {
@Override
public void close() {
// Ignore
}
};
for (Resource r : resources) {
r.write(unclosable);
unclosable.flush();
}
}
/** Initialize the result model. */
public void initResults() {
testResults = ModelFactory.createDefaultModel();
jena2 = testResults.createResource(BASE_RESULTS_URI + "#jena2");
jena2.addProperty(
RDFS.comment,
testResults.createLiteral(
"<a xmlns=\"http://www.w3.org/1999/xhtml\" href=\"http://jena.sourceforce.net/\">Jena2</a> includes a rule-based inference engine for RDF processing, "
+ "supporting both forward and backward chaining rules. Its OWL rule set is designed to provide sound "
+ "but not complete instance resasoning for that fragment of OWL/Full limited to the OWL/lite vocabulary. In"
+ "particular it does not support unionOf/complementOf.",
true));
jena2.addProperty(RDFS.label, "Jena2");
testResults.setNsPrefix("results", OWLResults.NS);
}
@Test
public void testSelectToWurcsSparql() throws SparqlException, UnsupportedEncodingException {
GlycoSequenceToWurcsSelectSparql s = new GlycoSequenceToWurcsSelectSparql("glycoct");
SparqlEntity se = new SparqlEntity();
se.setValue(
GlycoSequenceToWurcsSelectSparql.FromSequence,
"RES\n1b:a-dgal-HEX-1:5\n2s:n-acetyl\n3b:b-dgal-HEX-1:5\n4b:b-dglc-HEX-1:5\n5s:n-acetyl\n6b:b-dgal-HEX-1:5\n7b:a-lgal-HEX-1:5|6:d\n8b:b-dglc-HEX-1:5\n9s:n-acetyl\n10b:b-dglc-HEX-1:5\n11s:n-acetyl\n12b:b-dgal-HEX-1:5\n13b:a-lgal-HEX-1:5|6:d\nLIN\n1:1d(2+1)2n\n2:1o(3+1)3d\n3:3o(3+1)4d\n4:4d(2+1)5n\n5:4o(4+1)6d\n6:6o(2+1)7d\n7:3o(6+1)8d\n8:8d(2+1)9n\n9:1o(6+1)10d\n10:10d(2+1)11n\n11:10o(4+1)12d\n12:12o(2+1)13d"
.replaceAll("\n", "\\\\n"));
s.setSparqlEntity(se);
logger.debug(s.getSparql());
Query query =
QueryFactory.create(s.getSparql().replaceAll("null", "").replace("?Sequence", ""));
// QueryExecution qe =
// QueryExecutionFactory.sparqlService("http://localhost:3030/glycobase/query",query);
QueryExecution qe =
QueryExecutionFactory.sparqlService("http://test.ts.glytoucan.org/sparql", query);
ResultSet rs = qe.execSelect();
List<SparqlEntity> results = new ArrayList<SparqlEntity>();
while (rs.hasNext()) {
QuerySolution row = rs.next();
Iterator<String> columns = row.varNames();
SparqlEntity se2 = new SparqlEntity();
while (columns.hasNext()) {
String column = columns.next();
RDFNode cell = row.get(column);
if (cell.isResource()) {
Resource resource = cell.asResource();
// do something maybe with the OntModel???
if (resource.isLiteral()) se.setValue(column, resource.asLiteral().getString());
else se.setValue(column, resource.toString());
} else if (cell.isLiteral()) {
se.setValue(column, cell.asLiteral().getString());
} else if (cell.isAnon()) {
se.setValue(column, "anon");
} else {
se.setValue(column, cell.toString());
}
}
results.add(se);
}
for (SparqlEntity entity : results) {
System.out.println("results: " + entity.getValue("PrimaryId"));
}
}
public static void testADWithInheritance() throws Exception {
Builder b = new Builder();
b.addClasspath(new File("bin"));
b.setProperty("Export-Package", "test.metatype");
b.setProperty("-metatype", "*");
b.setProperty("-metatype-inherit", "true");
b.build();
Resource r =
b.getJar()
.getResource(
"OSGI-INF/metatype/test.metatype.MetatypeTest$TestADWithInheritanceChild.xml");
assertEquals(0, b.getErrors().size());
assertEquals(0, b.getWarnings().size());
System.err.println(b.getJar().getResources().keySet());
assertNotNull(r);
IO.copy(r.openInputStream(), System.err);
Document d = db.parse(r.openInputStream());
assertAD(
d, "fromChild", "From child", "fromChild", null, null, null, 0, "String", null, null, null);
assertAD(
d,
"fromSuperOne",
"From super one",
"fromSuperOne",
null,
null,
null,
0,
"String",
null,
null,
null);
assertAD(
d,
"fromSuperTwo",
"From super two",
"fromSuperTwo",
null,
null,
null,
0,
"String",
null,
null,
null);
}
private void evaluateBootstrapScripts(Context cx) throws IOException {
List<String> bootstrapScripts = config.getBootstrapScripts();
if (bootstrapScripts != null) {
for (String script : bootstrapScripts) {
Resource resource = new FileResource(script);
// not found, attempt to resolve the file relative to ringo home
if (!resource.exists()) {
resource = getRingoHome().getResource(script);
}
if (resource == null || !resource.exists()) {
throw new FileNotFoundException("Bootstrap script " + script + " not found");
}
mainWorker.evaluateScript(cx, new ReloadableScript(resource, this), globalScope);
}
}
}
/**
* Resolves a module id to a package resource. If module id consists of just one term and resolves
* to a package directory, the main module of the package is returned. If the module id consists
* of several terms and the first term resolves to a package directory, the remaining part of the
* module id is resolved against the "lib" directory of the package.
*
* @link http://nodejs.org/docs/v0.4.4/api/modules.html#folders_as_Modules
* @param moduleName the name of the package to load
* @param localPath the path of the resource issuing this call
* @return the location of the package's main module
* @throws IOException an unrecoverable I/O exception occurred while reading the package
*/
protected Resource loadPackage(String moduleName, Repository localPath) throws IOException {
int slash = 0;
String packageName, remainingName;
do {
slash = moduleName.indexOf('/', slash + 1);
if (slash == -1) {
packageName = moduleName;
remainingName = null;
} else {
packageName = moduleName.substring(0, slash);
if (".".equals(packageName) || "..".equals(packageName)) continue;
remainingName = moduleName.substring(slash + 1);
}
Resource json = findResource(packageName + "/package.json", null, localPath);
if (json != null && json.exists()) {
Scriptable obj = parseJsonResource(json);
Repository parent = json.getParentRepository();
String moduleId;
Resource res;
if (remainingName == null) {
// get the main module of this package
moduleId = getStringProperty(obj, "main", null);
if (moduleId != null) {
// optimize for the common case where main module
// property links to the exact file name
res = parent.getResource(moduleId);
if (res != null && res.exists()) return res;
}
} else {
// map remaining name to libs directory
String lib = "lib";
Object dirs = ScriptableObject.getProperty(obj, "directories");
if (dirs instanceof Scriptable) {
lib = getStringProperty((Scriptable) dirs, "lib", "lib");
}
moduleId = lib + "/" + remainingName;
}
if (moduleId != null) {
for (ModuleLoader loader : loaders) {
res = parent.getResource(moduleId + loader.getExtension());
if (res != null && res.exists()) return res;
}
if (remainingName != null) {
res = parent.getResource(moduleId);
if (res != null && res.exists()) return res;
}
}
}
} while (slash != -1);
return findResource(moduleName + "/index", loaders, localPath);
}
public static boolean equalResources(Resource t, Resource that) throws ModelException {
return t.getURI().equals(that.getURI());
/*
boolean b = false;
String tns = t.getNamespace();
String tn = t.getLocalName();
String thatns = that.getNamespace();
String thatn = that.getLocalName();
// System.err.print("Comparing " + t + " vs " + that + ": ");
if(thatns == null) {
if(tns == null) { // (null, null)
// System.err.println("true");
return thatn.equals(tn);
} else // (null, not null) maybe "that" did not detect names
b = thatn.equals(t.getURI());
} else {
if(tns != null) // (not null, not null)
b = thatn.equals(tn) && thatns.equals(tns);
else // (not null, null) maybe "this" did not detect names
b = that.getURI().equals(tn);
}
if(b)
return true;
// else we need to check whether different namespace splitting is used
if((tns != null ? tns.length() : 0) + (tn != null ? tn.length() : 0) ==
(thatns != null ? thatns.length() : 0) + (thatn != null ? thatn.length() : 0)) {
b = t.getURI().equals(that.getURI());
}
// System.err.println("" + b);
return b;
*/
}
/** Load the premises or conclusions for the test. */
public Model getDoc(Resource test, Property docType) throws IOException {
Model result = ModelFactory.createDefaultModel();
StmtIterator si = test.listProperties(docType);
while (si.hasNext()) {
String fname = si.nextStatement().getObject().toString() + ".rdf";
loadFile(fname, result);
}
return result;
}
public ModuleLoader getModuleLoader(Resource resource) {
String name = resource.getName();
for (ModuleLoader loader : loaders) {
if (name.endsWith(loader.getExtension())) {
return loader;
}
}
return loaders[0];
}
static Visual[] getTrueColor16(Client c) {
Vector vec = new Vector();
vec.addElement(new Visual(Resource.fakeClientId(c), 4, 6, 64, 0xf800, 0x7e0, 0x1f));
Visual[] v = new Visual[vec.size()];
for (int i = 0; i < vec.size(); i++) {
v[i] = (Visual) vec.elementAt(i);
}
vec.removeAllElements();
return v;
}
static Visual[] getPseudoColor8(Client c) {
Vector vec = new Vector();
vec.addElement(new Visual(Resource.fakeClientId(c), 3, 6, 256, 0, 0, 0));
Visual[] v = new Visual[vec.size()];
for (int i = 0; i < vec.size(); i++) {
v[i] = (Visual) vec.elementAt(i);
}
vec.removeAllElements();
return v;
}
public static void testSimple() throws Exception {
Builder b = new Builder();
b.addClasspath(new File("bin"));
b.setProperty("Export-Package", "test.metatype");
b.setProperty("-metatype", "*");
b.build();
Resource r =
b.getJar().getResource("OSGI-INF/metatype/test.metatype.MetatypeTest$TestSimple.xml");
assertEquals(0, b.getErrors().size());
assertEquals(0, b.getWarnings().size());
System.err.println(b.getJar().getResources().keySet());
assertNotNull(r);
IO.copy(r.openInputStream(), System.err);
Document d = db.parse(r.openInputStream());
assertEquals("TestSimple", xpath.evaluate("//OCD/@name", d));
assertEquals("simple", xpath.evaluate("//OCD/@description", d));
assertEquals("test.metatype.MetatypeTest$TestSimple", xpath.evaluate("//OCD/@id", d));
assertEquals("test.metatype.MetatypeTest$TestSimple", xpath.evaluate("//Designate/@pid", d));
assertEquals("test.metatype.MetatypeTest$TestSimple", xpath.evaluate("//Object/@ocdref", d));
assertEquals("simple", xpath.evaluate("//OCD/AD[@id='simple']/@id", d));
assertEquals("Simple", xpath.evaluate("//OCD/AD[@id='simple']/@name", d));
assertEquals("String", xpath.evaluate("//OCD/AD[@id='simple']/@type", d));
assertEquals("true", xpath.evaluate("//OCD/AD[@id='notSoSimple']/@required", d));
/**
* https://github.com/bndtools/bnd/issues/281
*
* <p>Using the Bnd annotations library (1.52.3), the generated metatype file will have
* required='false' for all fields annotated with @Meta.AD(). When this annotation is omitted,
* or when the required property is explicitly set, the field is correctly marked as required.
* Taking a glance at the code, the bug appears to be due to aQute.bnd.osgi.Annotation using
* aQute.bnd.annotation.metatype.Configurable internally for bridging Bnd-annotations to
* Java-annotations. This configurable only obtains the values from the Bnd-annotation, omitting
* the defaults defined in the Java annotation. The workaround is to explicitly mention the
* required property on each field annotated with @Meta.AD.
*/
assertEquals("true", xpath.evaluate("//OCD/AD[@id='simple']/@required", d));
assertEquals(
Integer.MAX_VALUE + "", xpath.evaluate("//OCD/AD[@id='notSoSimple']/@cardinality", d));
}
private Scriptable parseJsonResource(Resource resource) throws IOException {
JsonParser parser = new JsonParser(Context.getCurrentContext(), globalScope);
try {
Object result = parser.parseValue(resource.getContent());
if (!(result instanceof Scriptable)) {
throw new RuntimeException("Expected Object from package.json, got " + result);
}
return (Scriptable) result;
} catch (JsonParser.ParseException px) {
throw new RuntimeException(px);
}
}
private static void addToRegistry(String rootPath, File file, int tenantId) {
try {
Registry registry = getRegistry(tenantId);
// This path is used to store the file resource under registry
String fileRegistryPath =
REGISTRY_GADGET_STORAGE_PATH
+ file.getAbsolutePath().substring(rootPath.length()).replaceAll("[/\\\\]+", "/");
// Adding the file to the Registry
Resource fileResource = registry.newResource();
fileResource.setMediaType("application/vnd.wso2-gadget+xml");
fileResource.setContentStream(new FileInputStream(file));
registry.put(fileRegistryPath, fileResource);
} catch (RegistryException e) {
log.error(e.getMessage(), e);
} catch (FileNotFoundException e) {
log.error(e.getMessage(), e);
}
}
/** Run a single test of any sort, performing any appropriate logging and error reporting. */
public void runTest(Resource test) {
System.out.println("Running " + test);
boolean success = false;
boolean fail = false;
try {
success = doRunTest(test);
} catch (Exception e) {
fail = true;
System.out.print("\nException: " + e);
e.printStackTrace();
}
testCount++;
if (success) {
System.out.print((testCount % 40 == 0) ? ".\n" : ".");
System.out.flush();
passCount++;
} else {
System.out.println("\nFAIL: " + test);
}
Resource resultType = null;
if (fail) {
resultType = OWLResults.FailingRun;
} else {
if (test.hasProperty(RDF.type, OWLTest.NegativeEntailmentTest)
|| test.hasProperty(RDF.type, OWLTest.ConsistencyTest)) {
resultType = success ? OWLResults.PassingRun : OWLResults.FailingRun;
} else {
resultType = success ? OWLResults.PassingRun : OWLResults.IncompleteRun;
}
}
// log to the rdf result format
Resource result =
testResults
.createResource()
.addProperty(RDF.type, OWLResults.TestRun)
.addProperty(RDF.type, resultType)
.addProperty(OWLResults.test, test)
.addProperty(OWLResults.system, jena2);
}
/** Load the premises or conclusions for the test, optional performing import processing. */
public Model getDoc(Resource test, Property docType, boolean processImports) throws IOException {
if (processImports) {
Model result = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, null);
StmtIterator si = test.listProperties(docType);
while (si.hasNext()) {
String fname = si.nextStatement().getObject().toString() + ".rdf";
loadFile(fname, result);
}
return result;
} else {
return getDoc(test, docType);
}
}
/**
* Resolves a type name to a script file within our script directory and returns a Scriptable
* evaluated to the file.
*
* @param moduleName the name of the module to load
* @param localPath the path of the resource issuing this call
* @return The raw compiled script for the module
* @throws JavaScriptException if an error occurred evaluating the script file
* @throws IOException if an error occurred reading the script file
*/
public ReloadableScript getScript(String moduleName, Repository localPath)
throws JavaScriptException, IOException {
ReloadableScript script;
Resource source = findResource(moduleName, loaders, localPath);
if (!source.exists()) {
source = loadPackage(moduleName, localPath);
if (!source.exists()) {
source = findResource(moduleName, null, localPath);
}
}
Context cx = Context.getCurrentContext();
Map<Trackable, ReloadableScript> scripts = getScriptCache(cx);
if (scripts.containsKey(source)) {
script = scripts.get(source);
} else {
script = new ReloadableScript(source, this);
if (source.exists()) {
scripts.put(source, script);
}
}
return script;
}