// This method starts a newGame by initializing everything that is necessary before calling the
// game() method
public void newGame() {
// Calls the loadMap method to load the map for the game
loadMap();
// Calls the createPlayers method to create the players needed for the game
createPlayers();
// Starts the powerup manager to make powerups
pum.startPowerUps();
// Makes the gamePanel the only visible panel
gamePanel.setVisible(true);
optionsPanel.setVisible(false);
rulesPanel.setVisible(false);
controlsPanel.setVisible(false);
creditsPanel.setVisible(false);
titlePanel.setVisible(false);
// Resets some variables needed to play the game
winPlayer = 5;
deadPlayers = 0;
// Calls the game() method to play the game
game();
}
// This method makes only the credits panel visible
public void credits() {
// Makes only the creditsPanel visible
gamePanel.setVisible(false);
optionsPanel.setVisible(false);
rulesPanel.setVisible(false);
controlsPanel.setVisible(false);
creditsPanel.setVisible(true);
titlePanel.setVisible(false);
}
public ExecuteVisualizer() {
// Set textarea properties
jtaInstructions.setWrapStyleWord(true);
jtaInstructions.setLineWrap(true);
jtaInstructions.setEditable(false);
// Set ExecuteVisualizer frame layout and add components to the frame
setLayout(new BorderLayout(5, 10));
add(jtaInstructions, BorderLayout.CENTER);
add(jbtStart, BorderLayout.SOUTH);
// Set Options frame attributes
optionsFrame.setSize(250, 350);
optionsFrame.setTitle("Options");
optionsFrame.setResizable(false);
optionsFrame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
// Set VisualizerFrame attributes
vFrame.setSize(800, 475);
vFrame.setTitle("Beats visualized");
vFrame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
vFrame.setLocationRelativeTo(null);
// Set colorChoose frame attributes
colorChooser.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
ColorChooser newContentPane = new ColorChooser();
newContentPane.setOpaque(true); // content panes must be opaque
colorChooser.setContentPane(newContentPane);
colorChooser.setResizable(false);
// Add listener to button which will open Options, VisualizerFrame
// and colorChoose frame, and close the current frame
jbtStart.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
optionsFrame.setVisible(true);
vFrame.setVisible(true);
colorChooser.pack();
colorChooser.setVisible(true);
dispose();
}
});
}
@Override
public void action(final Object comp) {
final String pth = path();
final IOFile io = new IOFile(pth);
String inf = io.isDir() && io.children().length > 0 ? DIR_NOT_EMPTY : null;
ok = !pth.isEmpty();
final SerialMethod mth = SerialMethod.valueOf(method.getSelectedItem());
final OptionsOption<? extends Options> opts =
mth == SerialMethod.JSON
? SerializerOptions.JSON
: mth == SerialMethod.CSV ? SerializerOptions.CSV : null;
final boolean showmparams = opts != null;
mparams.setEnabled(showmparams);
if (ok) {
gui.gopts.set(GUIOptions.INPUTPATH, pth);
try {
if (comp == method) {
if (showmparams) {
final Options mopts = options(null).get(opts);
mparams.setToolTipText(tooltip(mopts));
mparams.setText(mopts.toString());
} else {
mparams.setToolTipText(null);
mparams.setText("");
}
}
Serializer.get(new ArrayOutput(), options(mth));
} catch (final IOException ex) {
ok = false;
inf = ex.getMessage();
}
}
info.setText(inf, ok ? Msg.WARN : Msg.ERROR);
enableOK(buttons, B_OK, ok);
}
/**
* Handle the -biojava option
*
* <p>Command line syntax: art -biojava org.biojava.bio.seq.io.EmblLikeFormat foo.embl
*
* <p>BioJava formats: EmblLikeFormat, FastaFormat, GAMEFormat, GenbankFormat, PhredFormat
*/
private void handleBioJava(final String[] args) {
if (args.length == 3) {
final String class_name = args[1];
final String location = args[2];
final Document location_document = DocumentFactory.makeDocument(location);
try {
final Object biojava_object = Class.forName(class_name).newInstance();
final EntryInformation entry_information = Options.getArtemisEntryInformation();
final uk.ac.sanger.artemis.io.BioJavaEntry emblEntry;
if (biojava_object instanceof SequenceFormat) {
final SequenceFormat sequence_format = (SequenceFormat) biojava_object;
emblEntry =
new uk.ac.sanger.artemis.io.BioJavaEntry(
entry_information, location_document, sequence_format);
final Entry new_entry = new Entry(emblEntry);
final EntryEdit new_entry_edit = makeEntryEdit(new_entry);
new_entry_edit.setVisible(true);
} else new MessageDialog(this, "not a SequenceFormat: " + class_name);
} catch (IllegalAccessException e) {
new MessageDialog(this, "cannot create class: " + class_name + " - IllegalAccessException");
} catch (ClassNotFoundException e) {
new MessageDialog(this, "cannot find class: " + class_name);
} catch (ClassCastException e) {
new MessageDialog(this, class_name + " is not a sub-class of " + "SequenceFormat");
} catch (IOException e) {
new MessageDialog(this, "I/O error while reading from " + location + ": " + e.getMessage());
} catch (NoSequenceException e) {
new MessageDialog(this, location + " contained no sequence");
} catch (InstantiationException e) {
new MessageDialog(this, "cannot instantiate " + class_name);
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ location
+ " has an out of range location: "
+ e.getMessage());
}
} else new MessageDialog(this, "the -biojava option needs two arguments");
}
/**
* Get the String residing on the clipboard.
*
* @return any text found on the Clipboard; if none found, return an empty String.
*/
public void openClipboardContents() {
Clipboard clipboard = Toolkit.getDefaultToolkit().getSystemClipboard();
// odd: the Object param of getContents is not currently used
Transferable contents = clipboard.getContents(null);
boolean hasTransferableText =
(contents != null) && contents.isDataFlavorSupported(DataFlavor.stringFlavor);
if (hasTransferableText) {
TextDocument entry_document = new TextDocument();
final InputStreamProgressListener progress_listener = getInputStreamProgressListener();
entry_document.addInputStreamProgressListener(progress_listener);
final EntryInformation artemis_entry_information = Options.getArtemisEntryInformation();
final uk.ac.sanger.artemis.io.Entry new_embl_entry =
EntryFileDialog.getEntryFromFile(this, entry_document, artemis_entry_information, false);
if (new_embl_entry == null) // the read failed
return;
try {
final Entry entry = new Entry(new_embl_entry);
EntryEdit last_entry_edit = makeEntryEdit(entry);
addEntryEdit(last_entry_edit);
getStatusLabel().setText("");
last_entry_edit.setVisible(true);
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ " cut and paste has an out of range "
+ "location: "
+ e.getMessage());
} catch (NoSequenceException e) {
new MessageDialog(this, "read failed: " + " cut and paste contains no sequence");
}
}
}
/** Read the entries given in the uk.ac.sanger.artemis.ini file. */
private void readDefaultEntries() {
final EntryInformation artemis_entry_information = Options.getArtemisEntryInformation();
final String default_sequence_file_name = Options.getOptions().getDefaultSequenceFileName();
final String default_feature_file_name = Options.getOptions().getDefaultFeatureFileName();
if (default_sequence_file_name != null) {
final String default_sequence_file_name_embl = default_sequence_file_name + "_embl";
uk.ac.sanger.artemis.io.Entry new_embl_entry = null;
// try opening the default sequence file with "_embl" added to the name
// if that fails try the plain sequence file name
final Document entry_document = DocumentFactory.makeDocument(default_sequence_file_name_embl);
final InputStreamProgressListener progress_listener = getInputStreamProgressListener();
entry_document.addInputStreamProgressListener(progress_listener);
if (entry_document.readable()) {
new_embl_entry =
EntryFileDialog.getEntryFromFile(
this, entry_document, artemis_entry_information, false);
}
if (new_embl_entry == null
|| new_embl_entry.getSequence() == null
|| new_embl_entry.getSequence().length() == 0) {
final File entry_file = new File(default_sequence_file_name);
if (entry_file.exists()) {
new_embl_entry =
EntryFileDialog.getEntryFromFile(
this, entry_document, artemis_entry_information, false);
} else {
// read failed
System.err.println(
"file does not exist: " + default_sequence_file_name + "(given in options files)");
return;
}
}
if (new_embl_entry == null
|| new_embl_entry.getSequence() == null
|| new_embl_entry.getSequence().length() == 0) {
// read failed
System.err.println(
"failed to read " + default_sequence_file_name + "(given in options files)");
return;
}
getStatusLabel().setText("");
try {
final Entry entry = new Entry(new_embl_entry);
final EntryEdit new_entry_edit = makeEntryEdit(entry);
new_entry_edit.setVisible(true);
if (default_feature_file_name != null) {
final Document feature_document = DocumentFactory.makeDocument(default_feature_file_name);
final uk.ac.sanger.artemis.io.Entry new_embl_table_entry =
EntryFileDialog.getEntryFromFile(
this, feature_document, artemis_entry_information, false);
if (new_embl_table_entry == null) // open failed
return;
final EntryGroup entry_group = new_entry_edit.getEntryGroup();
final Entry new_table_entry = new Entry(entry.getBases(), new_embl_table_entry);
entry_group.add(new_table_entry);
}
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ default_feature_file_name
+ " has an out of range location: "
+ e.getMessage());
} catch (NoSequenceException e) {
new MessageDialog(
this, "read failed: " + new_embl_entry.getName() + " contains no sequence");
}
}
}
/** Read the entries named in args and in the diana.ini file. */
protected void readArgsAndOptions(final String[] args) {
if (args.length == 0) {
if (System.getProperty("chado") != null && (args.length < 1 || args[0].indexOf(':') == -1))
fm = new LocalAndRemoteFileManager(ArtemisMain.this);
// open the entries given in the options file(diana.ini)
readDefaultEntries();
return;
}
if (args[0].equals("-biojava")) {
handleBioJava(args);
return;
}
final EntryInformation artemis_entry_information = Options.getArtemisEntryInformation();
EntryEdit last_entry_edit = null;
boolean seen_plus = false;
for (int i = 0; i < args.length; ++i) {
String new_entry_name = args[i];
if (new_entry_name.length() == 0) continue;
if (new_entry_name.equals("+")) {
seen_plus = true;
continue;
}
if (new_entry_name.startsWith("+") && last_entry_edit != null || seen_plus) {
// new feature file
final Document entry_document;
if (seen_plus) entry_document = DocumentFactory.makeDocument(new_entry_name);
else entry_document = DocumentFactory.makeDocument(new_entry_name.substring(1));
final InputStreamProgressListener progress_listener = getInputStreamProgressListener();
entry_document.addInputStreamProgressListener(progress_listener);
final uk.ac.sanger.artemis.io.Entry new_embl_entry =
EntryFileDialog.getEntryFromFile(
this, entry_document, artemis_entry_information, false);
if (new_embl_entry == null) // the read failed
break;
try {
final Entry new_entry =
new Entry(last_entry_edit.getEntryGroup().getBases(), new_embl_entry);
last_entry_edit.getEntryGroup().add(new_entry);
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ new_entry_name
+ " has an out of range "
+ "location: "
+ e.getMessage());
}
} else if (System.getProperty("chado") != null && new_entry_name.indexOf(':') > -1) {
// open from database e.g. Pfalciparum:Pf3D7_09:95000..150000
Splash.logger4j.info("OPEN ENTRY " + new_entry_name);
getStatusLabel().setText("Connecting ...");
DatabaseEntrySource entry_source = new DatabaseEntrySource();
boolean promptUser = true;
if (System.getProperty("read_only") != null) {
promptUser = false;
entry_source.setReadOnly(true);
}
if (!entry_source.setLocation(promptUser)) return;
last_entry_edit =
DatabaseJPanel.show(
entry_source, this, getInputStreamProgressListener(), new_entry_name);
} else {
// new sequence file
if (last_entry_edit != null) {
last_entry_edit.setVisible(true);
last_entry_edit = null;
}
if (new_entry_name.indexOf("://") == -1) {
File file = new File(new_entry_name);
if (!file.exists()) {
JOptionPane.showMessageDialog(
null,
"File " + new_entry_name + " not found.\n" + "Check the file name.",
"File Not Found",
JOptionPane.WARNING_MESSAGE);
}
}
final Document entry_document = DocumentFactory.makeDocument(new_entry_name);
entry_document.addInputStreamProgressListener(getInputStreamProgressListener());
final uk.ac.sanger.artemis.io.Entry new_embl_entry =
EntryFileDialog.getEntryFromFile(
this, entry_document, artemis_entry_information, false);
if (new_embl_entry == null) // the read failed
break;
try {
final Entry entry = new Entry(new_embl_entry);
last_entry_edit = makeEntryEdit(entry);
addEntryEdit(last_entry_edit);
getStatusLabel().setText("");
} catch (OutOfRangeException e) {
new MessageDialog(
this,
"read failed: one of the features in "
+ new_entry_name
+ " has an out of range "
+ "location: "
+ e.getMessage());
break;
} catch (NoSequenceException e) {
new MessageDialog(this, "read failed: " + new_entry_name + " contains no sequence");
break;
}
}
}
if (System.getProperty("offset") != null)
last_entry_edit.getGotoEventSource().gotoBase(Integer.parseInt(System.getProperty("offset")));
last_entry_edit.setVisible(true);
for (int entry_index = 0; entry_index < entry_edit_objects.size(); ++entry_index) {
if (System.getProperty("offset") != null)
entry_edit_objects
.elementAt(entry_index)
.getGotoEventSource()
.gotoBase(Integer.parseInt(System.getProperty("offset")));
}
}
// The constructor which sets up all the JFrame, Canvas, JPanels, and sets the buffer strategy.
public Bomberman() {
// makes the Canvas visible
setVisible(true);
// Creates window and sets it up
window = new JFrame("BOMBERMAN");
window.setBounds(0, 0, WIDTH, HEIGHT);
window.setResizable(false);
window.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
window.addKeyListener(this);
setBounds(0, 0, WIDTH, HEIGHT);
window.getContentPane().setLayout(new CardLayout());
// Creates the menu bar
window.setJMenuBar(new Menu());
// Creates an option panel that has all the options
optionsPanel = new Options();
window.getContentPane().add(optionsPanel, "OptionsPanel");
// Creates a title panel which is the title screen
titlePanel = new JPanel();
titlePanel.setPreferredSize(new Dimension(WIDTH, HEIGHT));
titlePanel.setLayout(new GridLayout(1, 1));
titlePanel.add(
new JLabel(new ImageIcon(getClass().getClassLoader().getResource("titleScreen.png"))));
window.getContentPane().add(titlePanel, "TitlePanel");
// Creates and sets up the game panel where the game is played on
gamePanel = new JPanel();
gamePanel.setPreferredSize(new Dimension(WIDTH, HEIGHT));
gamePanel.setLayout(null);
gamePanel.add(this);
window.getContentPane().add(gamePanel, "GamePanel");
// Creates a rules screen panel which is the rules screen
rulesPanel = new JPanel();
rulesPanel.setPreferredSize(new Dimension(WIDTH, HEIGHT));
rulesPanel.setLayout(new GridLayout(1, 1));
rulesPanel.add(new JLabel(new ImageIcon(getClass().getClassLoader().getResource("rules.png"))));
window.getContentPane().add(rulesPanel, "RulesPanel");
// Creates a controls screen panel which is the controls screen
controlsPanel = new JPanel();
controlsPanel.setPreferredSize(new Dimension(WIDTH, HEIGHT));
controlsPanel.setLayout(new GridLayout(1, 1));
controlsPanel.add(
new JLabel(new ImageIcon(getClass().getClassLoader().getResource("controls.png"))));
window.getContentPane().add(controlsPanel, "ControlsPanel");
// Creates a controls screen panel which is the controls screen
creditsPanel = new JPanel();
creditsPanel.setPreferredSize(new Dimension(WIDTH, HEIGHT));
creditsPanel.setLayout(new GridLayout(1, 1));
creditsPanel.add(
new JLabel(new ImageIcon(getClass().getClassLoader().getResource("credits.png"))));
window.getContentPane().add(creditsPanel, "CreditsPanel");
// Makes certain panels visible/invisible
gamePanel.setVisible(false);
optionsPanel.setVisible(false);
rulesPanel.setVisible(false);
controlsPanel.setVisible(false);
creditsPanel.setVisible(false);
titlePanel.setVisible(true);
window.setVisible(true);
// double buffering
createBufferStrategy(2);
bs = getBufferStrategy();
}
/**
* Create a new FeatureListFrame component. The constructor does not call setVisible (true).
*
* @param title The title to use for the new JFrame.
* @param feature_list The FeatureList to show.
* @param selection The Selection that the commands in the menus will operate on.
* @param entry_group The EntryGroup object where new features/entries will be added.
* @param goto_event_source The object that the menu item will call makeBaseVisible() on.
*/
public FeatureListFrame(
final String title,
final Selection selection,
final GotoEventSource goto_event_source,
final EntryGroup entry_group,
final BasePlotGroup base_plot_group) {
super(title);
this.entry_group = entry_group;
feature_list = new FeatureList(entry_group, selection, goto_event_source, base_plot_group);
final Font default_font = Options.getOptions().getFont();
setFont(default_font);
final JMenuBar menu_bar = new JMenuBar();
menu_bar.setFont(default_font);
setJMenuBar(menu_bar);
final JMenu file_menu = new JMenu("File");
final JMenuItem close = new JMenuItem("Close");
close.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent event) {
setVisible(false);
FeatureListFrame.this.dispose();
feature_list.stopListening();
}
});
file_menu.add(close);
menu_bar.add(file_menu);
final JMenu select_menu =
new SelectMenu(this, selection, goto_event_source, entry_group, base_plot_group);
menu_bar.add(select_menu);
final JMenu view_menu =
new ViewMenu(this, selection, goto_event_source, entry_group, base_plot_group);
menu_bar.add(view_menu);
final JMenu goto_menu = new GotoMenu(this, selection, goto_event_source, entry_group);
menu_bar.add(goto_menu);
if (Options.readWritePossible()) {
final JMenu edit_menu =
new EditMenu(this, selection, goto_event_source, entry_group, base_plot_group, null);
menu_bar.add(edit_menu);
final JMenu write_menu = new WriteMenu(this, selection, entry_group);
menu_bar.add(write_menu);
final JMenu run_menu = new RunMenu(this, selection);
menu_bar.add(run_menu);
}
final JScrollPane jsp_feature_list = new JScrollPane(feature_list);
getContentPane().add(jsp_feature_list, "Center");
final JPanel panel = new JPanel();
final JButton close_button = new JButton("Close");
panel.add(close_button);
close_button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
setVisible(false);
FeatureListFrame.this.dispose();
feature_list.stopListening();
}
});
getContentPane().add(panel, "South");
pack();
addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent event) {
setVisible(false);
entry_group.removeEntryGroupChangeListener(FeatureListFrame.this);
FeatureListFrame.this.dispose();
feature_list.stopListening();
}
});
entry_group.addEntryGroupChangeListener(this);
final Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
int screen_height = screen.height;
int screen_width = screen.width;
if (screen_width <= 700 || screen_height <= 400)
setSize(screen_width * 9 / 10, screen_height * 9 / 10);
else setSize(700, 400);
final int hgt = entry_group.getAllFeaturesCount() * feature_list.getLineHeight();
feature_list.setPreferredSize(new Dimension(getSize().width * 4, hgt));
jsp_feature_list.getVerticalScrollBar().setUnitIncrement(feature_list.getLineHeight());
setLocation(
new Point((screen.width - getSize().width) / 2, (screen.height - getSize().height) / 2));
}
/**
* Checkbox.
*
* @param mn min value
* @param mx max value
* @param opt option
* @param opts options
* @param win parent window
*/
public BaseXSlider(
final int mn, final int mx, final NumberOption opt, final Options opts, final Window win) {
this(mn, mx, opts.get(opt), win);
options = opts;
option = opt;
}
/** Assigns the current checkbox value to the option specified in the constructor. */
public void assign() {
options.set(option, value);
}