void writePopulationStructure() {
List<String[]> populationParams = new ArrayList<String[]>();
populationParams.add(new String[] {"NumberOfDemes", "" + numberOfDemes});
populationParams.add(new String[] {"NetworkType", popType.toString()});
populationParams.add(new String[] {"Directed", dirType});
if (popType.equals(PopulationType.RANDOM)) {
populationParams.add(new String[] {"ProbabilityConnect", "" + probConnect});
}
populationParams.add(new String[] {"ModelType", modelType.toString()});
populationParams.add(infectionParams);
populationParams.add(new String[] {"DemeType", demeType});
populationParams.add(new String[] {"NumberOfHostsPerDeme", "" + hostsInDeme});
populationParams.add(new String[] {"ProbabilityInfectionAnyOtherDeme", "" + pinfectother});
populationParams.add(new String[] {"ReportSummary", reportSummary});
logFile.write("<PopulationStructure>");
logFile.writeParametersXML(populationParams, 1);
logFile.write("</PopulationStructure>");
}
public void setPopulationType(String pt) {
popType = PopulationType.valueOf(pt);
}