Ejemplo n.º 1
0
  @Test
  public void testConvertInSet() throws Exception {
    VistaDataChunk fragment =
        MockVistaDataChunks.createFromJson(
            getObservationInSetResourceAsStream(), mockPatient, "observation");
    fragment.setLocalPatientId("25");

    Observation observation = (Observation) importer.convert(fragment);
    assertThat(observation.getPid(), is(MOCK_PID));
    assertThat(
        observation.getUid(),
        is(
            UidUtils.getObservationUid(
                fragment.getSystemId(), fragment.getLocalPatientId(), observation.getLocalId())));
    assertThat(observation.getEntered(), is(new PointInTime(2013, 2, 15, 14, 31, 50)));
    assertThat(observation.getFacilityCode(), is("500D"));
    assertThat(observation.getFacilityName(), is("SLC-FO HMP DEV"));
    assertThat(observation.getInterpretationCode(), is("urn:hl7:observation-interpretation:U"));
    assertThat(observation.getInterpretationName(), is("Unknown"));
    assertThat(observation.getLocalId(), is("{B14A750E-9849-4A50-9725-95EBD2289526}"));
    assertThat(observation.getLocationName(), is("GEN MED"));
    assertThat(observation.getLocationUid(), is("urn:va:location:F484:9"));
    assertThat(observation.getObserved(), is(new PointInTime(2013, 2, 15, 6, 53)));
    assertThat(observation.getResult(), is("TRIPLE"));
    assertThat(observation.getSetID(), is("{1BDC4488-C9CD-415E-BB93-F52C5945CB1A}"));
    assertThat(observation.getSetName(), is("triple lumen cath L Subclavian"));
    assertThat(observation.getSetStart(), is(new PointInTime(2013, 2, 14, 14, 27)));
    assertThat(observation.getSetType(), is("IV"));
    assertThat(observation.getStatusCode(), is("urn:va:observation-status:complete"));
    assertThat(observation.getStatusName(), is("complete"));
    assertThat(
        observation.getTypeCode(),
        is("urn:va:clioterminology:{E038D201-2840-B759-4D91-44A093768F8B}"));
    assertThat(observation.getTypeName(), is("CENTRAL LINE TYPE"));
  }
Ejemplo n.º 2
0
  @Test
  public void testConvertWithQualifiers() throws Exception {
    LinkedHashMap<String, Object> map = new LinkedHashMap<>(3);
    map.put("systemId", "F484");
    map.put("code", "500D");
    map.put("localPatientId", "231");
    mockPatient.addToFacilities(new PatientFacility(map));
    VistaDataChunk fragment =
        MockVistaDataChunks.createFromJson(
            getObservationWithQualifiersResourceAsStream(), mockPatient, "observation");
    fragment.setLocalPatientId("231");

    Observation observation = (Observation) importer.convert(fragment);
    assertNotNull(observation);
    assertEquals(MOCK_PID, observation.getPid());
    assertEquals("500D", observation.getFacilityCode());
    assertEquals("SLC-FO HMP DEV", observation.getFacilityName());
    assertEquals("urn:va:location:F484:56", observation.getLocationUid());
    assertEquals("5TH FLOOR", observation.getLocationName());
    assertEquals(
        UidUtils.getObservationUid("F484", fragment.getLocalPatientId(), observation.getLocalId()),
        observation.getUid());
    assertEquals("{D4953826-902D-4722-9520-BE1916BF739B}", observation.getLocalId());
    assertEquals("Clinical Observation", observation.getKind());
    assertEquals(
        "urn:va:clioterminology:{0F33223E-DF2C-6B8B-5201-5E091C5F9065}", observation.getTypeCode());
    assertEquals("TEMPERATURE", observation.getTypeName());
    assertEquals("102.5", observation.getResult());
    assertEquals("F", observation.getUnits());
    assertEquals("urn:hl7:observation-interpretation:H", observation.getInterpretationCode());
    assertEquals("High", observation.getInterpretationName());
    assertEquals(new PointInTime(2012, 6, 29, 16, 14), observation.getObserved());
    assertEquals(new PointInTime(2012, 6, 29, 16, 17, 29), observation.getEntered());
    assertEquals("complete", observation.getStatusName());
    assertNull(observation.getMethodCode());
    assertNull(observation.getMethodName());
    assertEquals("4500642", observation.getBodySiteCode());
    assertEquals("ORAL", observation.getBodySiteName());

    assertNull(observation.getComment());
    assertNull(observation.getVaStatus());
    assertEquals("quality: ACTUAL", observation.getQualifierText());

    assertEquals(1, observation.getQualifiers().size());
    assertEquals("4688634", observation.getQualifiers().iterator().next().getCode());
    assertEquals("ACTUAL", observation.getQualifiers().iterator().next().getName());
    assertEquals("quality", observation.getQualifiers().iterator().next().getType());
  }
Ejemplo n.º 3
0
  @Test
  public void testConvert() throws Exception {
    LinkedHashMap<String, Object> map = new LinkedHashMap<>(3);
    map.put("systemId", "F484");
    map.put("code", "500D");
    map.put("localPatientId", "100847");
    mockPatient.addToFacilities(new PatientFacility(map));
    VistaDataChunk fragment =
        MockVistaDataChunks.createFromJson(
            getObservationResourceAsStream(), mockPatient, "observation");
    fragment.setLocalPatientId("100847");

    Observation observation = (Observation) importer.convert(fragment);
    assertNotNull(observation);
    assertEquals(MOCK_PID, observation.getPid());
    assertEquals("500D", observation.getFacilityCode());
    assertEquals("SLC-FO HMP DEV", observation.getFacilityName());
    assertEquals("urn:va:location:F484:5", observation.getLocationUid());
    assertEquals("3N SURGERY", observation.getLocationName());
    assertEquals(
        UidUtils.getObservationUid("F484", fragment.getLocalPatientId(), observation.getLocalId()),
        observation.getUid());
    assertEquals("{F7A04600-1F7E-4DC7-B71C-136647E76C8A}", observation.getLocalId());
    assertEquals("Clinical Observation", observation.getKind());
    assertEquals(
        "urn:va:clioterminology:{56BD11AB-FE61-4785-B3CA-C528A5F4EBD6}", observation.getTypeCode());
    assertEquals("OUTPUT - EMESIS", observation.getTypeName());
    assertEquals("1000", observation.getResult());
    assertEquals("ml", observation.getUnits());
    assertEquals("urn:hl7:observation-interpretation:N", observation.getInterpretationCode());
    assertEquals("Normal", observation.getInterpretationName());
    assertEquals(new PointInTime(2011, 11, 18, 13, 17), observation.getObserved());
    assertEquals(new PointInTime(2011, 11, 30, 13, 21, 26), observation.getEntered());
    assertEquals("complete", observation.getStatusName());
    assertNull(observation.getMethodCode());
    assertNull(observation.getMethodName());
    assertNull(observation.getBodySiteCode());
    assertNull(observation.getBodySiteName());

    assertNull(observation.getComment());
    assertNull(observation.getVaStatus());
    assertNull(observation.getQualifierText());
  }
  @Test
  public void testFetchPatientAppointments() {
    try {
      when(this.mockJMeadowsClient.getPatientAppointments(any(JMeadowsQuery.class)))
          .thenReturn(createTestData());

      JMeadowsQuery query = new JMeadowsQueryBuilder().user(user).patient(patient).build();

      PatientIds patientIds =
          new PatientIds.Builder().pid(pid).icn(icn).uid(uid).edipi(edipi).build();

      List<VistaDataChunk> vistaDataChunkList =
          jMeadowsAppointmentService.fetchDodPatientAppointments(query, patientIds);

      assertNotNull(vistaDataChunkList);

      // dod status report should have been removed
      assertThat(vistaDataChunkList.size(), is(2));

      List<PatientAppointments> testDataList = createTestData();

      for (int i = 0; i < vistaDataChunkList.size(); i++) {
        VistaDataChunk vistaDataChunk = vistaDataChunkList.get(i);

        assertThat(
            JMeadowsAppointmentService.DOMAIN_APPOINTMENT_VISIT, is(vistaDataChunk.getDomain()));
        assertThat(2, is(vistaDataChunk.getItemCount()));
        assertThat(i + 1, is(vistaDataChunk.getItemIndex()));
        assertThat(vistaId, is(vistaDataChunk.getParams().get("vistaId")));
        assertThat(dfn, is(vistaDataChunk.getParams().get("patientDfn")));
        assertThat(vistaId, is(vistaDataChunk.getSystemId()));
        assertThat(dfn, is(vistaDataChunk.getLocalPatientId()));
        assertThat(icn, is(vistaDataChunk.getPatientIcn()));
        assertThat(pid, is(vistaDataChunk.getPatientId()));
        assertThat(
            "vrpcb://9E7A/HMP SYNCHRONIZATION CONTEXT/HMPDJFS API", is(vistaDataChunk.getRpcUri()));
        assertThat(VistaDataChunk.NEW_OR_UPDATE, is(vistaDataChunk.getType()));

        Map<String, Object> jsonMap = vistaDataChunk.getJsonMap();

        PatientAppointments testPatientAppointment = testDataList.get(i);

        // assertThat("Allergy/Adverse Reaction", is(jsonMap.get("kind")));
        assertThat("DOD", is(jsonMap.get("facilityCode")));
        assertThat("DOD", is(jsonMap.get("facilityName")));
        assertThat(
            "urn:va:appointment:DOD:" + edipi + ":" + testPatientAppointment.getCdrEventId(),
            is(jsonMap.get("uid")));

        List<Map<String, Object>> providers = (List<Map<String, Object>>) jsonMap.get("providers");

        Map<String, Object> provider = providers.get(0);
        assertThat(testPatientAppointment.getProviderName(), is(provider.get("name")));
      }

    } catch (JMeadowsException_Exception e) {
      fail(e.getMessage());
    }
  }
  @Test
  public void testConvert() throws Exception {
    VistaDataChunk chunk =
        MockVistaDataChunks.createFromJson(
            PatientDemographicsImporterTest.class.getResourceAsStream("patient.json"),
            mockPatient,
            "patient");
    PatientDemographicsImporter pi = new PatientDemographicsImporter();
    PatientDemographics p = pi.convert(chunk);

    Assert.assertNotNull(p);
    Assert.assertEquals(
        p.getUid(), UidUtils.getPatientUid(chunk.getSystemId(), chunk.getLocalPatientId()));
    Assert.assertEquals("10104", p.getIcn());
    Assert.assertEquals("AVIVAPATIENT", p.getFamilyName());
    Assert.assertEquals("TWENTYFOUR", p.getGivenNames());
    Assert.assertEquals("A0004", p.getBriefId());
    Assert.assertEquals("666000004", p.getSsn());
    Assert.assertTrue(p.isSensitive());
    Assert.assertEquals(new PointInTime(1935, 4, 7), p.getBirthDate());

    Assert.assertEquals("Male", p.getGenderName());
    Assert.assertEquals("urn:va:pat-gender:M", p.getGenderCode());
    // TODO: test for religion (needs code translation)

    Assert.assertTrue(p.isVeteran());
    Assert.assertEquals("177", p.getLrdfn());
    Assert.assertTrue(p.isServiceConnected());
    Assert.assertEquals("10", p.getServiceConnectedPercent());

    Assert.assertEquals(1, p.getAddress().size());
    Address address = p.getAddress().iterator().next();
    Assert.assertEquals("Any Street", address.getLine1());
    Assert.assertEquals("Any Town", address.getCity());
    Assert.assertEquals("WEST VIRGINIA", address.getState());
    Assert.assertEquals("99998-0071", address.getZip());

    Assert.assertEquals(1, p.getPatientRecordFlag().size());
    PatientRecordFlag flag = p.getPatientRecordFlag().iterator().next();
    Assert.assertEquals("WANDERER", flag.getName());
    Assert.assertEquals("patient has a history of wandering off and getting lost", flag.getText());

    Assert.assertNotNull(p.getMaritalStatusName());
    Assert.assertEquals("urn:va:pat-maritalStatus:D", p.getMaritalStatusCode());
    Assert.assertEquals("Divorced", p.getMaritalStatusName());

    Assert.assertEquals(1, p.getAlias().size());
    Alias alias = p.getAlias().iterator().next();
    Assert.assertEquals("P4", alias.getFullName());
    Assert.assertNull(alias.getFamilyName());
    Assert.assertNull(alias.getGivenNames());

    Assert.assertEquals(2, p.getTelecom().size());
    Set<Telecom> telecoms = p.getTelecom();
    for (Telecom telecom : telecoms) {
      if (telecom.getUse().equals("H")) {
        Assert.assertEquals("(222)555-8235", telecom.getValue());
      } else if (telecom.getUse().equals("WP")) {
        Assert.assertEquals("(222)555-7720", telecom.getValue());
      } else {
        Assert.fail();
      }
    }

    Assert.assertEquals(1, p.getFacility().size()); // .facilities.size()
    SortedSet<PatientFacility> facilities = p.getFacility();
    PatientFacility facility = facilities.first();
    Assert.assertEquals("500", facility.getCode());
    Assert.assertEquals("CAMP MASTER", facility.getName());
    Assert.assertEquals(chunk.getSystemId(), facility.getSystemId());
    Assert.assertEquals(chunk.getLocalPatientId(), facility.getLocalPatientId());
    Assert.assertFalse(facility.isHomeSite());

    Assert.assertEquals(6, p.getExposure().size());
    // assertEquals("urn:va:N", p.getExposure().iterator().next().getUid());

    Assert.assertEquals(1, p.getContact().size());
    PatientContact support = p.getContact().iterator().next();
    Assert.assertEquals("urn:va:pat-contact:NOK", support.getTypeCode());
    Assert.assertEquals("Next of Kin", support.getTypeName());
    Assert.assertEquals("VETERAN,BROTHER", support.getName());
  }