private MageTabDocumentSet getDocumentSet(MageTabFileSet mtfs) {
try {
MageTabDocumentSet mtds = MageTabParser.INSTANCE.parse(mtfs);
return mtds;
} catch (Exception ex) {
throw new Error(ex);
}
}
public MageTabDocumentSet selectRefFiles(Project project, CaArrayFileSet idfFileSet) {
MageTabDocumentSet documentSet = null;
final MageTabFileSet inputSet = getInputFileSet(project, idfFileSet);
try {
documentSet = MageTabParser.INSTANCE.parseDataFileNames(inputSet);
handleSelectRefFilesResult(idfFileSet, this.translator.validate(documentSet, idfFileSet));
} catch (final MageTabParsingException e) {
updateFileStatus(idfFileSet, FileStatus.VALIDATION_ERRORS);
} catch (final InvalidDataException e) {
handleResult(idfFileSet, e.getValidationResult());
}
return documentSet;
}
public MageTabDocumentSet validateFiles(Project targetProject, CaArrayFileSet fileSet) {
LOG.info("Validating MAGE-TAB document set");
updateFileStatus(fileSet, FileStatus.VALIDATING);
MageTabDocumentSet documentSet = null;
final MageTabFileSet inputSet = getInputFileSet(targetProject, fileSet);
try {
updateFileStatus(fileSet, FileStatus.VALIDATED);
documentSet = MageTabParser.INSTANCE.parse(inputSet);
handleResult(fileSet, this.translator.validate(documentSet, fileSet));
} catch (final MageTabParsingException e) {
updateFileStatus(fileSet, FileStatus.VALIDATION_ERRORS);
} catch (final InvalidDataException e) {
handleResult(fileSet, e.getValidationResult());
}
this.searchDao.save(fileSet.getFiles());
return documentSet;
}
/** {@inheritDoc} */
@Override
public MageTabDocumentSet importFiles(Project targetProject, CaArrayFileSet fileSet)
throws MageTabParsingException {
LOG.info("Importing MAGE-TAB document set");
updateFileStatus(fileSet, FileStatus.IMPORTING);
final MageTabFileSet inputSet = getInputFileSet(targetProject, fileSet);
MageTabDocumentSet documentSet = null;
try {
documentSet = MageTabParser.INSTANCE.parse(inputSet);
final CaArrayTranslationResult translationResult =
this.translator.translate(documentSet, fileSet);
save(targetProject, translationResult);
updateFileStatus(fileSet, FileStatus.IMPORTED);
} catch (final InvalidDataException e) {
handleResult(fileSet, e.getValidationResult());
}
this.searchDao.save(fileSet.getFiles());
return documentSet;
}
