public void setTransform(TransMatrix kTransform) {
if (kTransform.getDim() == 3) {
m_kImageTransform.MakeIdentity();
m_kImageTransform.M00 = kTransform.M00;
m_kImageTransform.M01 = kTransform.M01;
m_kImageTransform.M02 = 0;
m_kImageTransform.M03 = kTransform.M02;
m_kImageTransform.M10 = kTransform.M10;
m_kImageTransform.M11 = kTransform.M11;
m_kImageTransform.M12 = 0;
m_kImageTransform.M13 = kTransform.M12;
} else {
m_kImageTransform.Copy(kTransform);
}
if (m_kImageEffectDual != null) {
/*
Matrix4f toOrigin = new Matrix4f(false);
Matrix4f fromOrigin = new Matrix4f(false);
toOrigin.M03 = -m_kImageA.extents[0]/2.0f;
toOrigin.M13 = -m_kImageA.extents[1]/2.0f;
fromOrigin.M03 = m_kImageA.extents[0]/2.0f;
fromOrigin.M13 = m_kImageA.extents[1]/2.0f;
TransMatrix kMat = new TransMatrix(4,4);
kMat.setTransform(0,0,0,0,0,15,1,1,1,0,0,0);
m_kImageTransform.Copy(kMat);
System.err.println( "captureImage" + m_iScreenCaptureCounter + " " + m_kImageTransform.ToString() );
m_kImageTransform.MakeIdentity();
m_kImageTransform.M00 = 0.9666009f;
m_kImageTransform.M01 = -0.25924882f;
m_kImageTransform.M02 = 0f;
m_kImageTransform.M03 = 74.82431f;
m_kImageTransform.M10 = 0.25845572f;
m_kImageTransform.M11 = 0.9654881f;
m_kImageTransform.M12 = 0f;
m_kImageTransform.M13 = -57.23043f;
System.err.println( m_kImageTransform.ToString() );
m_kImageTransform.Inverse();
System.err.println( m_kImageTransform.ToString() );
m_kImageTransform.MakeIdentity();
m_kImageTransform.M00 = 0.9652507f;
m_kImageTransform.M01 = 0.25918508f;
m_kImageTransform.M02 = 0f;
m_kImageTransform.M03 = -56.043213f;
m_kImageTransform.M10 = -0.25839218f;
m_kImageTransform.M11 = 0.96636325f;
m_kImageTransform.M12 = 0f;
m_kImageTransform.M13 = 72.88661f;
*/
// m_kImageTransform.MultLeft( m_kToOriginInv );
// m_kImageTransform.Mult( m_kFromOriginInv );
// System.err.println( "setTransform " + m_kImageTransform.ToString() );
// m_kImageTransform.Inverse();
// m_kImageTransform.MultLeft( m_kToOrigin );
// m_kImageTransform.Mult( m_kFromOrigin );
// m_kImageTransform.MultLeft(fromOrigin);
// m_kImageTransform.Mult(toOrigin);
m_kImageEffectDual.SetTransform(m_kImageTransform);
// System.err.println( m_kImageTransform.ToString() );
}
}
/**
* Displays the file information.
*
* @param dlog JDialogBase dialog box that is written to
* @param matrix transformation matrix
*/
@SuppressWarnings("unchecked")
public void displayAboutInfo(JDialogBase dlog, TransMatrix matrix) {
JDialogFileInfoXML dialog = (JDialogFileInfoXML) dlog;
int[] extents;
int i;
int[] editorChoice = new int[1];
editorChoice[0] = JDialogEditor.STRING;
dialog.displayAboutInfo(this); // setup layout in the dialog
editorChoice[0] = JDialogEditor.STRING;
if (this.imageDescription != null) {
dialog.appendPrimaryData("Description", this.imageDescription, editorChoice);
} else {
dialog.appendPrimaryData("Description", "", editorChoice);
}
editorChoice[0] = JDialogEditor.XML_LINKEDIMAGE;
if (this.linkedImagePath != null) {
dialog.appendPrimaryData("Linked-image", this.linkedImagePath, editorChoice);
} else {
dialog.appendPrimaryData("Linked-image", "", editorChoice);
}
dialog.appendPrimaryData("Image-offset", Integer.toString(getOffset()));
extents = super.getExtents();
for (i = 0; i < extents.length; i++) {
dialog.appendPrimaryData("Dimension " + i, Integer.toString(extents[i]));
}
dialog.appendPrimaryData("Type", ModelStorageBase.getBufferTypeStr(getDataType()));
if (ModelImage.isColorImage(getDataType())) {
dialog.appendPrimaryData("Min red", Double.toString(getMinR()));
dialog.appendPrimaryData("Max red", Double.toString(getMaxR()));
dialog.appendPrimaryData("Min green", Double.toString(getMinG()));
dialog.appendPrimaryData("Max green", Double.toString(getMaxG()));
dialog.appendPrimaryData("Min blue", Double.toString(getMinB()));
dialog.appendPrimaryData("Max blue", Double.toString(getMaxB()));
} else {
dialog.appendPrimaryData("Min", Double.toString(getMin()));
dialog.appendPrimaryData("Max", Double.toString(getMax()));
}
dialog.appendPrimaryData("Orientation", getImageOrientationStr(getImageOrientation()));
dialog.appendPrimaryData("Axis X Orientation", getAxisOrientationStr(getAxisOrientation(0)));
dialog.appendPrimaryData("Axis Y Orientation", getAxisOrientationStr(getAxisOrientation(1)));
dialog.appendPrimaryData("Axis Z Orientation", getAxisOrientationStr(getAxisOrientation(2)));
float[] resolutions; // = new float[5];
resolutions = getResolutions();
int[] measure; // = new int[5];
measure = getUnitsOfMeasure();
for (i = 0; i < extents.length; i++) {
if (resolutions[i] > 0.0) {
String pixelRes = "Pixel resolution " + i;
dialog.appendPrimaryData(
pixelRes,
Float.toString(resolutions[i])
+ " "
+ (Unit.getUnitFromLegacyNum(measure[i])).toString());
} // end of if (resolutions[i] > 0.0)
} // for (i=0; i < 5; i++)
if ((extents.length > 2) && (extents[2] > 0)) {
dialog.appendPrimaryData(
"Slice thickness ",
Float.toString(getSliceThickness())
+ " "
+ (Unit.getUnitFromLegacyNum(measure[2])).toString());
}
float[] origin; // = new float[4];
origin = getOrigin();
for (i = 0; (i < extents.length) && (i < 4); i++) {
String originStr = "Origin " + i;
dialog.appendPrimaryData(originStr, Float.toString(origin[i]));
} // for (i=0; i < 4; i++)
if (getEndianess() == FileBase.LITTLE_ENDIAN) {
dialog.appendPrimaryData("Endianess", "Little Endian");
} else {
dialog.appendPrimaryData("Endianess", "Big Endian");
}
if (matrix != null) {
// when using displayAboutInfo(dialog) this doesn't appear
// calling prg might use an editing panel to adjust this matrix
// BEN: CHANGE the following...
// dialog.appendPrimaryData("Transform ID", TransMatrix.getTransformIDStr(getTransformID()));
dialog.appendPrimaryData("Matrix", matrix.matrixToString(10, 4));
}
editorChoice[0] = JDialogEditor.XML_MODALITY;
dialog.appendPrimaryData("Modality", getModalityStr(getModality()), editorChoice);
editorChoice[0] = JDialogEditor.STRING;
dialog.appendPrimaryData("History", this.history, editorChoice);
// now subject information
String emptyString = new String("");
editorChoice[0] = JDialogEditor.STRING;
if (subjectName != null) {
dialog.appendSubjectData("Subject Name", subjectName, editorChoice);
} else {
dialog.appendSubjectData("Subject Name", emptyString, editorChoice);
}
if (subjectID != null) {
dialog.appendSubjectData("Subject ID", subjectID, editorChoice);
} else {
dialog.appendSubjectData("Subject ID", emptyString, editorChoice);
}
editorChoice[0] = JDialogEditor.XML_RACE;
if (race != null) {
dialog.appendSubjectData("Race", race, editorChoice);
} else {
dialog.appendSubjectData("Race", emptyString, editorChoice);
}
editorChoice[0] = JDialogEditor.STRING;
if (diagnosis != null) {
dialog.appendSubjectData("Diagnosis", diagnosis, editorChoice);
} else {
dialog.appendSubjectData("Diagnosis", emptyString, editorChoice);
}
editorChoice[0] = JDialogEditor.XML_DOB;
if (DOB != null) {
dialog.appendSubjectData("Date of Birth", DOB, editorChoice);
} else {
dialog.appendSubjectData("Date of Birth", "0000-01-01", editorChoice);
}
editorChoice[0] = JDialogEditor.STRING;
dialog.appendSubjectData("Height", (new Integer(height)).toString(), editorChoice);
dialog.appendSubjectData("Weight", (new Integer(weight)).toString(), editorChoice);
editorChoice[0] = JDialogEditor.XML_SEX;
if (sex != null) {
dialog.appendSubjectData("Sex", sex, editorChoice);
} else {
dialog.appendSubjectData("Sex", "Unknown", editorChoice);
}
editorChoice[0] = JDialogEditor.STRING;
if (bodyPart != null) {
dialog.appendSubjectData("Body Part", bodyPart, editorChoice);
} else {
dialog.appendSubjectData("Body Part", emptyString, editorChoice);
}
// Scan Attributes
editorChoice[0] = JDialogEditor.STRING;
if (equipmentName != null) {
dialog.appendScanData("Equipment Model Name", equipmentName, editorChoice);
} else {
dialog.appendScanData("Equipment Model Name", emptyString, editorChoice);
}
if (scanID != null) {
dialog.appendScanData("Scan ID", scanID, editorChoice);
} else {
dialog.appendScanData("Scan ID", emptyString, editorChoice);
}
if (protocol != null) {
dialog.appendScanData("Protocol", protocol, editorChoice);
} else {
dialog.appendScanData("Protocol", emptyString, editorChoice);
}
editorChoice[0] = JDialogEditor.XML_DATE;
if (scanDate != null) {
dialog.appendScanData("Scan Date", scanDate, editorChoice);
} else {
dialog.appendScanData("Scan Date", "0000-01-01", editorChoice);
}
editorChoice[0] = JDialogEditor.XML_TIME;
if (scanTime != null) {
dialog.appendScanData("Scan Time", scanTime, editorChoice);
} else {
dialog.appendScanData("Scan Time", "00:00:00-00:00", editorChoice);
}
// Investigator Data
for (int j = 0; j < 3; j++) {
editorChoice[0] = JDialogEditor.STRING;
boolean isNull = (investigators[j] == null);
// name is required if investigator data exists.
// everything else is optional
if (!isNull) {
dialog.appendInvestigatorData((j + 1) + " Name", investigators[j].getName(), editorChoice);
} else {
dialog.appendInvestigatorData((j + 1) + " Name", emptyString, editorChoice);
}
if (!isNull && (investigators[j].getTitle() != null)) {
dialog.appendInvestigatorData(
(j + 1) + " Title", investigators[j].getTitle(), editorChoice);
} else {
dialog.appendInvestigatorData((j + 1) + " Title", emptyString, editorChoice);
}
if (!isNull && (investigators[j].getAffiliation() != null)) {
dialog.appendInvestigatorData(
(j + 1) + " Affiliation", investigators[j].getAffiliation(), editorChoice);
} else {
dialog.appendInvestigatorData((j + 1) + " Affiliation", emptyString, editorChoice);
}
if (!isNull && (investigators[j].getEmail() != null)) {
dialog.appendInvestigatorData(
(j + 1) + " Email", investigators[j].getEmail(), editorChoice);
} else {
dialog.appendInvestigatorData((j + 1) + " Email", emptyString, editorChoice);
}
if (!isNull && (investigators[j].getPhone() != null)) {
dialog.appendInvestigatorData(
(j + 1) + " Phone", investigators[j].getPhone(), editorChoice);
} else {
dialog.appendInvestigatorData((j + 1) + " Phone", emptyString, editorChoice);
}
}
Enumeration<String> e = getPSetKeys();
while (e.hasMoreElements()) {
XMLPSet temp = getPSet(e.nextElement());
String desc = temp.getDescription();
Enumeration<String> pe = temp.getParameterKeys();
while (pe.hasMoreElements()) {
XMLParameter tp = temp.getParameter(pe.nextElement());
editorChoice[0] = JDialogEditor.STRING;
int loc = tp.getDescription().indexOf('[') + 1;
int value = Integer.parseInt(tp.getDescription().substring(loc, loc + 1));
if (value > 0)
dialog.appendTagData(
tp.getDescription().substring(0, tp.getDescription().indexOf('[')),
desc + " [" + (value + 1) + "]",
tp.getValue(),
editorChoice);
else
dialog.appendTagData(
tp.getDescription().substring(0, tp.getDescription().indexOf('[')),
desc,
tp.getValue(),
editorChoice);
// dialog.appendParameter(desc, tp.getName(), tp.getDescription(), tp.getValueType(),
// tp.getValue(), tp
// .getDate(), tp.getTime());
}
}
}