Ejemplo n.º 1
0
  @Test
  public void testSame() throws Exception {
    MsMsFile file1 = new Mzid();
    MsMsData data1 = file1.load(PATH1, false).markDecoys("decoy");
    int spectra1 = data1.getSpectra().size();
    int psms1 = data1.getPsms().size();
    int peptides1 = data1.getPeptides().size();
    int proteins1 = data1.getProteins().size();
    logger.info("Data1: " + data1.toString());

    MsMsFile file2 = new Mzid();
    MsMsData data2 = file2.load(PATH1, false).markDecoys("decoy");
    logger.info("Data2: " + data2.toString());

    data1.mergeFromPeptide(data2);
    int spectraMerge = data1.getSpectra().size();
    int psmsMerge = data1.getPsms().size();
    int peptidesMerge = data1.getPeptides().size();
    int proteinsMerge = data1.getProteins().size();
    logger.info("Merge: " + data1.toString());

    assertEquals(2 * spectra1, spectraMerge);
    assertEquals(2 * psms1, psmsMerge);
    assertEquals(peptides1, peptidesMerge);
    assertEquals(proteins1, proteinsMerge);
  }
Ejemplo n.º 2
0
  @Test
  public void testDifferent() throws Exception {
    MsMsFile file1 = new Mzid();
    MsMsData data1 = file1.load(PATH1, false).markDecoys("decoy");
    int spectra1 = data1.getSpectra().size();
    int psms1 = data1.getPsms().size();
    int peptides1 = data1.getPeptides().size();
    int proteins1 = data1.getProteins().size();
    logger.info("Data1: " + data1.toString());

    MsMsFile file2 = new Mzid();
    MsMsData data2 = file2.load(PATH2, false).markDecoys("decoy");
    int spectra2 = data2.getSpectra().size();
    int psms2 = data2.getPsms().size();
    int peptides2 = data2.getPeptides().size();
    int proteins2 = data2.getProteins().size();
    logger.info("Data2: " + data2.toString());

    data1.mergeFromPeptide(data2);
    int spectraMerge = data1.getSpectra().size();
    int psmsMerge = data1.getPsms().size();
    int peptidesMerge = data1.getPeptides().size();
    int proteinsMerge = data1.getProteins().size();
    logger.info("Merge: " + data1.toString());

    assertEquals(spectra1 + spectra2, spectraMerge);
    assertEquals(psms1 + psms2, psmsMerge);
    assertTrue(
        peptidesMerge >= peptides1
            && peptidesMerge >= peptides2
            && peptidesMerge <= (peptides1 + peptides2));
    assertTrue(
        proteinsMerge >= proteins1
            && proteinsMerge >= proteins2
            && proteinsMerge <= (proteins1 + proteins2));
  }