@Test
public void testSetQuantityFromType() throws Exception {
SpecimenTypeWrapper type = parentSpc.getSpecimenType();
Assert.assertNull(parentSpc.getQuantity());
parentSpc.setSpecimenType(null);
parentSpc.setQuantityFromType();
// no specimen type, no change
Assert.assertNull(parentSpc.getQuantity());
parentSpc.setSpecimenType(type);
parentSpc.setQuantityFromType();
// no aliquotedspecimen with this type in study, no change
Assert.assertNull(parentSpc.getQuantity());
StudyWrapper study = parentSpc.getCollectionEvent().getPatient().getStudy();
AliquotedSpecimenWrapper as =
AliquotedSpecimenHelper.addAliquotedSpecimen(study, parentSpc.getSpecimenType());
study.reload();
Assert.assertNotNull(as.getVolume());
Assert.assertTrue(!as.getVolume().equals(BigDecimal.ZERO));
parentSpc.setQuantityFromType();
Assert.assertTrue(as.getVolume().equals(parentSpc.getQuantity()));
}
@Test
public void testGetSetSpecimenType() throws BiobankCheckException, Exception {
SpecimenTypeWrapper stw = parentSpc.getSpecimenType();
SpecimenTypeWrapper newType = SpecimenTypeHelper.addSpecimenType("newStw");
stw.persist();
Assert.assertTrue(stw.getId() != newType.getId());
parentSpc.setSpecimenType(newType);
Assert.assertTrue(newType.getId() == parentSpc.getSpecimenType().getId());
SpecimenWrapper sample1 = new SpecimenWrapper(appService);
sample1.setSpecimenType(null);
Assert.assertNull(sample1.getSpecimenType());
}
@Test
public void testPersistCheckParentAcceptSpecimenType() throws BiobankCheckException, Exception {
SpecimenTypeWrapper oldSpecimenType = childSpc.getSpecimenType();
SpecimenTypeWrapper type2 = SpecimenTypeHelper.addSpecimenType("sampletype_2");
childSpc.setSpecimenType(type2);
try {
childSpc.persist();
Assert.fail("Container can't hold this type !");
} catch (InvalidOptionException e) {
Assert.assertTrue(true);
}
childSpc.setSpecimenType(oldSpecimenType);
childSpc.persist();
}
@Test
public void testDelete() throws Exception {
String name = "testDelete" + r.nextInt();
SpecimenTypeWrapper type1 = childSpc.getSpecimenType();
try {
type1.delete();
Assert.fail("cannot delete a type in use by a specimen");
} catch (ModelIsUsedException e) {
Assert.assertTrue(true);
}
SpecimenTypeWrapper type2 = SpecimenTypeHelper.addSpecimenType(name + "_st2");
SpecimenTypeHelper.removeFromCreated(type2);
ContainerTypeWrapper typeChild = childSpc.getParentContainer().getContainerType();
typeChild.addToSpecimenTypeCollection(Arrays.asList(type2));
typeChild.persist();
childSpc.reload();
childSpc.setSpecimenType(type2);
childSpc.persist();
try {
type2.delete();
Assert.fail("cannot delete a type in use by a specimen");
} catch (ModelIsUsedException e) {
Assert.assertTrue(true);
}
childSpc.setSpecimenType(type1);
childSpc.persist();
typeChild.removeFromSpecimenTypeCollectionWithCheck(Arrays.asList(type2));
typeChild.persist();
type2.delete();
}
@Test
public void testHasUnknownImportType() throws ApplicationException {
Assert.assertFalse(childSpc.hasUnknownImportType());
SpecimenTypeWrapper unknownType = null;
for (SpecimenTypeWrapper type :
SpecimenTypeWrapper.getAllSourceOnlySpecimenTypes(appService, false)) {
if (type.isUnknownImport()) {
unknownType = type;
break;
}
}
childSpc.setSpecimenType(unknownType);
Assert.assertTrue(childSpc.hasUnknownImportType());
}