@Override
public void process(int z, int t, int p) {
// called for each z,t,p by DatasetIterator.iterateAll();
System.out.println("MagOrientProcessor.process(" + z + "," + t + "," + p + ")");
ArrayList<TaggedImage> sampleImgs = new ArrayList<TaggedImage>();
for (int i = 0; i < numSamples; i++) {
TaggedImage img = mda.getImageCache().getImage(i + 2, z, t, p);
if (img == null) {
System.out.println(
"**** " + "img==null at submit i: " + i + " z: " + z + " t: " + t + " p: " + p);
}
sampleImgs.add(img);
}
// Assuming channels : {mag,ort,0,1,2,3,4}
// TaggedImage magImage = in.getImage(0, z, t, p);
// TaggedImage ortImage = in.getImage(1, z, t, p);
// Set Parameters...
Map<String, Object> parameters = new HashMap<String, Object>();
parameters.put("Swing", 0.03);
parameters.put("BkgdCorrected", true);
parameters.put("summaryMetadata", mda.getImageCache().getSummaryMetadata());
parameters.put("sampleImages", sampleImgs);
// proc.setInputParameters(parameters);
IProcess proc = new ProcessMagOrt(this.parameters, this.data);
proc.process();
processResult(proc);
}
private DerivedFrom createDerivedFrom(IProcess proc) {
Transform xform = new Transform(proc.getName(), proc.getInputParameters());
String antecentPath = mda.getImageCache().getDiskLocation();
String resultPath = mdg.getImageCache().getDiskLocation();
String relPath = PathUtils.getRelativePath(antecentPath, resultPath);
DerivedFrom df =
DerivedFrom.createDerivedFrom(
relPath, (List<TaggedImage>) proc.getInputParameters().get("sampleImages"), xform);
return df;
}
public void processResult(IProcess proc) {
DerivedFrom df = null; // createDerivedFrom(proc);
TaggedImage magImg = (TaggedImage) proc.getOutputParameters().get("ImgMag");
TaggedImage ortImg = (TaggedImage) proc.getOutputParameters().get("ImgOrt");
this.saveToDataset(0, "Mag", magImg, df);
this.saveToDataset(1, "Ort", ortImg, df);
}
