/**
* Function to convert Ont Request message type to an XML string
*
* @param reqMessageType String containing Ont request message to be converted to string
* @return A String data type containing the Ont RequestMessage in XML format
*/
public String getXMLString(RequestMessageType reqMessageType) throws JAXBUtilException {
StringWriter strWriter = null;
try {
strWriter = new StringWriter();
edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory of =
new edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory();
ExplorerJAXBUtil.getJAXBUtil().marshaller(of.createRequest(reqMessageType), strWriter);
} catch (JAXBUtilException e) {
log.error("Error marshalling Ont request message");
throw e;
}
return strWriter.toString();
}
public String writeContentQueryXML(String queryName, String userId) {
// DTOFactory dtoFactory = new DTOFactory();
// QueryType queryType = new QueryType();
// create header
PsmQryHeaderType headerType = new PsmQryHeaderType();
UserType userType = new UserType();
userType.setLogin(userId);
userType.setValue(userId);
headerType.setUser(userType);
headerType.setRequestType(PsmRequestTypeType.CRC_QRY_RUN_QUERY_INSTANCE_FROM_QUERY_DEFINITION);
// QuerySetType querySetType = new QuerySetType();
// querySetType.getQuery().add(queryType);
RequestHeaderType requestHeader = new RequestHeaderType();
requestHeader.setResultWaittimeMs(180000);
BodyType bodyType = new BodyType();
edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory psmOf =
new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory();
bodyType.getAny().add(psmOf.createPsmheader(headerType));
MessageHeaderType messageHeader = getMessageHeader();
RequestMessageType requestMessageType = new RequestMessageType();
requestMessageType.setMessageBody(bodyType);
requestMessageType.setMessageHeader(messageHeader);
requestMessageType.setRequestHeader(requestHeader);
// dtoFactory.getRequestMessageType(messageHeader, requestHeader,
// bodyType);
JAXBUtil jaxbUtil = PreviousQueryJAXBUtil.getJAXBUtil();
StringWriter strWriter = new StringWriter();
try {
edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory of =
new edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory();
jaxbUtil.marshaller(of.createRequest(requestMessageType), strWriter);
} catch (Exception e) {
e.printStackTrace();
}
System.out.println("Generated content XML request: " + strWriter.toString());
return strWriter.toString();
}
public String wirteQueryXML() {
DTOFactory dtoFactory = new DTOFactory();
// TimeZone pdt = TimeZone.getTimeZone("EST");
// DatatypeFactory dataTypeFactory = null;
// try {
// dataTypeFactory = DatatypeFactory.newInstance();
// XMLGregorianCalendar xmlCalendar =
// dataTypeFactory.newXMLGregorianCalendarDate(2006, 9, 21, -5*60);
// TimeZone pdt = xmlCalendar.getgetTimezone();
// }
// catch (DatatypeConfigurationException e) {
// e.printStackTrace();
// }
// RequestType requestType = new RequestType();
// requestType.setSpecificityScale(specificity());
QueryDefinitionType queryDefinitionType = new QueryDefinitionType();
QueryDefinitionRequestType queryDefinitionRequestType = new QueryDefinitionRequestType();
for (int i = 0; i < panelCount; i++) {
ConceptTreePanel panel = getTreePanel(i);
ArrayList<QueryConceptTreeNodeData> nodelist = panel.data().getItems();
if ((nodelist != null) && (nodelist.size() > 0)) {
System.out.println(
"Panel: "
+ panel.getGroupName()
+ " Excluded: "
+ ((panel.data().exclude()) ? "yes" : "no"));
PanelType panelType = new PanelType();
panelType.setInvert((panel.data().exclude()) ? 1 : 0);
PanelType.TotalItemOccurrences totalItemOccurrences = new PanelType.TotalItemOccurrences();
totalItemOccurrences.setValue(panel.getOccurrenceTimes());
panelType.setTotalItemOccurrences(totalItemOccurrences);
panelType.setPanelNumber(i + 1);
// if(panel.data().startTime() != -1) {
// panelType.setPanelDateFrom(//dataTypeFactory.
// newXMLGregorianCalendarDate(
// dtoFactory.getXMLGregorianCalendarDate(panel.data().startYear(
// ),
// panel.data().startMonth(), panel.data().startDay()));
// }
// if(panel.data().endTime() != -1) {
// panelType.setPanelDateTo(//dataTypeFactory.
// newXMLGregorianCalendarDate(
// dtoFactory.getXMLGregorianCalendarDate(panel.data().endYear(),
// panel.data().endMonth(), panel.data().endDay()));
// }
for (int j = 0; j < nodelist.size(); j++) {
QueryConceptTreeNodeData node = nodelist.get(j);
System.out.println("\tItem: " + node.fullname());
// create item
ItemType itemType = new ItemType();
// itemType.setConstrainByDate(.setDateFrom(dtoFactory.
// getXMLGregorianCalendarDate(2006,
// 10, 4)));
itemType.setItemKey(node.fullname());
itemType.setItemName(node.name());
// mm removed
// itemType.setItemTable(node.lookuptable());
itemType.setTooltip(node.tooltip());
itemType.setHlevel(Integer.parseInt(node.hlevel()));
itemType.setClazz("ENC");
ConstrainByDate cDate = new ConstrainByDate();
ConstrainDateType constrinDataType = new ConstrainDateType();
constrinDataType.setValue(
dtoFactory.getXMLGregorianCalendarDate(
node.startYear(), node.startMonth(), node.startDay()));
if (node.startTime() != -1) {
cDate.setDateFrom(constrinDataType);
}
if (node.endTime() != -1) {
cDate.setDateTo(constrinDataType);
}
itemType.getConstrainByDate().add(cDate);
panelType.getItem().add(itemType);
}
queryDefinitionType.getPanel().add(panelType);
}
}
// create infotype
InfoType infoType = new InfoType();
infoType.setValue("INFO");
infoType.setUrl("http://www.ibm.com");
// create header
PsmQryHeaderType headerType = new PsmQryHeaderType();
UserType userType = new UserType();
userType.setLogin(UserInfoBean.getInstance().getUserName());
userType.setValue(UserInfoBean.getInstance().getUserName());
headerType.setUser(userType);
headerType.setRequestType(PsmRequestTypeType.CRC_QRY_RUN_QUERY_INSTANCE_FROM_QUERY_DEFINITION);
if (queryName == null) {
queryName =
getTreePanel(0).data().getItems().get(0).name()
+ "_"
+ generateMessageId().substring(0, 4);
}
queryDefinitionType.setQueryName(queryName);
queryDefinitionRequestType.setQueryDefinition(queryDefinitionType);
RequestHeaderType requestHeader = new RequestHeaderType();
requestHeader.setResultWaittimeMs(180000);
BodyType bodyType = new BodyType();
edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory psmOf =
new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory();
bodyType.getAny().add(psmOf.createPsmheader(headerType));
bodyType.getAny().add(psmOf.createRequest(queryDefinitionRequestType));
// new QueryToolDTOFactory().buildBodyType(headerType,
// queryDefinitionRequestType, null);
MessageHeaderType messageHeader = getMessageHeader();
RequestMessageType requestMessageType = new RequestMessageType();
requestMessageType.setMessageBody(bodyType);
requestMessageType.setMessageHeader(messageHeader);
requestMessageType.setRequestHeader(requestHeader);
// dtoFactory.getRequestMessageType(messageHeader, requestHeader,
// bodyType);
JAXBUtil jaxbUtil = PreviousQueryJAXBUtil.getJAXBUtil();
StringWriter strWriter = new StringWriter();
try {
edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory of =
new edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ObjectFactory();
jaxbUtil.marshaller(of.createRequest(requestMessageType), strWriter);
} catch (Exception e) {
e.printStackTrace();
}
return strWriter.toString();
}