/**
* A method that finds all genes in a dna strand strarting with ATG coden and ending with TAG, TGA
* or TAA coden.
*
* @param dna The dna strand to search for genes.
* @return all found genes in StorageResource datatype.
*/
public StorageResource storeAll(String dna) {
StorageResource sr = new StorageResource();
int start = 0;
int stop = 0;
int loc = 0;
String dna1 = dna.toUpperCase();
// System.out.println(dna1);
while (true) {
loc = dna1.indexOf("ATG", start);
if (loc == -1) break;
int sloc = stopIndex(dna1, loc + 3);
if (sloc > dna.length()) {
// continue;
// System.out.println("");
} else {
sr.add(dna.substring(loc, sloc));
// System.out.println(dna.substring(loc,sloc));
loc = sloc - 3;
}
// System.out.println(loc);
start = loc + 3;
}
return sr;
}
