public void updatePanel(AjaxRequestTarget aTarget, CurationContainer aCC)
throws UIMAException, ClassNotFoundException, IOException, BratAnnotationException {
JCas jCas = repository.readCurationCas(bModel.getDocument());
final int sentenceAddress =
getAddr(
selectSentenceAt(jCas, bModel.getSentenceBeginOffset(), bModel.getSentenceEndOffset()));
bModel.setSentenceAddress(sentenceAddress);
final Sentence sentence = selectByAddr(jCas, Sentence.class, sentenceAddress);
List<Sentence> followingSentences =
selectFollowing(jCas, Sentence.class, sentence, bModel.getPreferences().getWindowSize());
// Check also, when getting the last sentence address in the display window, if this is the
// last sentence or the ONLY sentence in the document
Sentence lastSentenceAddressInDisplayWindow =
followingSentences.size() == 0
? sentence
: followingSentences.get(followingSentences.size() - 1);
if (curationView == null) {
curationView = new SourceListView();
}
curationView.setCurationBegin(sentence.getBegin());
curationView.setCurationEnd(lastSentenceAddressInDisplayWindow.getEnd());
int ws = bModel.getPreferences().getWindowSize();
Sentence fs =
BratAjaxCasUtil.selectSentenceAt(
jCas, bModel.getSentenceBeginOffset(), bModel.getSentenceEndOffset());
int l = BratAjaxCasUtil.getLastSentenceAddressInDisplayWindow(jCas, getAddr(fs), ws);
Sentence ls = (Sentence) selectByAddr(jCas, FeatureStructure.class, l);
fSn = BratAjaxCasUtil.getSentenceNumber(jCas, fs.getBegin());
lSn = BratAjaxCasUtil.getSentenceNumber(jCas, ls.getBegin());
sentencesListView.addOrReplace(sentenceList);
aTarget.add(sentencesListView);
/*
* corssSentAnnoView.addOrReplace(crossSentAnnoList); aTarget.add(corssSentAnnoView);
*/
aTarget.add(suggestionViewPanel);
if (annotate) {
annotator.bratRender(aTarget, editor.getCas(bModel));
annotator.bratSetHighlight(aTarget, bModel.getSelection().getAnnotation());
} else {
annotator.bratRenderLater(aTarget);
}
annotate = false;
CuratorUtil.updatePanel(
aTarget,
suggestionViewPanel,
aCC,
annotator,
repository,
annotationSelectionByUsernameAndAddress,
curationView,
annotationService,
userRepository);
}
/**
* Fetches the CAS that the user will be able to edit. In AUTOMATION/CORRECTION mode, this is the
* CAS for the CORRECTION_USER and in CURATION mode it is the CAS for the CURATION user.
*
* @param aBratAnnotatorModel the model.
* @param aDocument the source document.
* @param jCases the JCases.
* @param randomAnnotationDocument an annotation document.
* @return the JCas.
* @throws UIMAException hum?
* @throws ClassNotFoundException hum?
* @throws IOException if an I/O error occurs.
* @throws BratAnnotationException hum?
*/
public JCas getMergeCas(
BratAnnotatorModel aBratAnnotatorModel,
SourceDocument aDocument,
Map<String, JCas> jCases,
AnnotationDocument randomAnnotationDocument)
throws UIMAException, ClassNotFoundException, IOException, BratAnnotationException {
JCas mergeJCas = null;
try {
if (aBratAnnotatorModel.getMode().equals(Mode.AUTOMATION)
|| aBratAnnotatorModel.getMode().equals(Mode.CORRECTION)) {
// Upgrading should be an explicit action during the opening of a document at the
// end
// of the open dialog - it must not happen during editing because the CAS addresses
// are used as IDs in the UI
// repository.upgradeCasAndSave(aDocument, aBratAnnotatorModel.getMode(),
// aBratAnnotatorModel.getUser().getUsername());
mergeJCas = repository.readCorrectionCas(aDocument);
} else {
// Upgrading should be an explicit action during the opening of a document at the
// end
// of the open dialog - it must not happen during editing because the CAS addresses
// are used as IDs in the UI
// repository.upgradeCasAndSave(aDocument, aBratAnnotatorModel.getMode(),
// aBratAnnotatorModel.getUser().getUsername());
mergeJCas = repository.readCurationCas(aDocument);
}
}
// Create jcas, if it could not be loaded from the file system
catch (Exception e) {
if (aBratAnnotatorModel.getMode().equals(Mode.AUTOMATION)
|| aBratAnnotatorModel.getMode().equals(Mode.CORRECTION)) {
mergeJCas = createCorrectionCas(mergeJCas, aBratAnnotatorModel, randomAnnotationDocument);
} else {
mergeJCas =
createCurationCas(
aBratAnnotatorModel.getProject(),
randomAnnotationDocument,
jCases,
aBratAnnotatorModel.getAnnotationLayers());
}
}
return mergeJCas;
}