Ejemplo n.º 1
0
  public void updatePanel(AjaxRequestTarget aTarget, CurationContainer aCC)
      throws UIMAException, ClassNotFoundException, IOException, BratAnnotationException {
    JCas jCas = repository.readCurationCas(bModel.getDocument());

    final int sentenceAddress =
        getAddr(
            selectSentenceAt(jCas, bModel.getSentenceBeginOffset(), bModel.getSentenceEndOffset()));
    bModel.setSentenceAddress(sentenceAddress);

    final Sentence sentence = selectByAddr(jCas, Sentence.class, sentenceAddress);
    List<Sentence> followingSentences =
        selectFollowing(jCas, Sentence.class, sentence, bModel.getPreferences().getWindowSize());
    // Check also, when getting the last sentence address in the display window, if this is the
    // last sentence or the ONLY sentence in the document
    Sentence lastSentenceAddressInDisplayWindow =
        followingSentences.size() == 0
            ? sentence
            : followingSentences.get(followingSentences.size() - 1);
    if (curationView == null) {
      curationView = new SourceListView();
    }
    curationView.setCurationBegin(sentence.getBegin());
    curationView.setCurationEnd(lastSentenceAddressInDisplayWindow.getEnd());

    int ws = bModel.getPreferences().getWindowSize();
    Sentence fs =
        BratAjaxCasUtil.selectSentenceAt(
            jCas, bModel.getSentenceBeginOffset(), bModel.getSentenceEndOffset());
    int l = BratAjaxCasUtil.getLastSentenceAddressInDisplayWindow(jCas, getAddr(fs), ws);
    Sentence ls = (Sentence) selectByAddr(jCas, FeatureStructure.class, l);
    fSn = BratAjaxCasUtil.getSentenceNumber(jCas, fs.getBegin());
    lSn = BratAjaxCasUtil.getSentenceNumber(jCas, ls.getBegin());

    sentencesListView.addOrReplace(sentenceList);
    aTarget.add(sentencesListView);

    /*
     * corssSentAnnoView.addOrReplace(crossSentAnnoList); aTarget.add(corssSentAnnoView);
     */
    aTarget.add(suggestionViewPanel);
    if (annotate) {
      annotator.bratRender(aTarget, editor.getCas(bModel));
      annotator.bratSetHighlight(aTarget, bModel.getSelection().getAnnotation());

    } else {
      annotator.bratRenderLater(aTarget);
    }
    annotate = false;
    CuratorUtil.updatePanel(
        aTarget,
        suggestionViewPanel,
        aCC,
        annotator,
        repository,
        annotationSelectionByUsernameAndAddress,
        curationView,
        annotationService,
        userRepository);
  }
Ejemplo n.º 2
0
  /**
   * Fetches the CAS that the user will be able to edit. In AUTOMATION/CORRECTION mode, this is the
   * CAS for the CORRECTION_USER and in CURATION mode it is the CAS for the CURATION user.
   *
   * @param aBratAnnotatorModel the model.
   * @param aDocument the source document.
   * @param jCases the JCases.
   * @param randomAnnotationDocument an annotation document.
   * @return the JCas.
   * @throws UIMAException hum?
   * @throws ClassNotFoundException hum?
   * @throws IOException if an I/O error occurs.
   * @throws BratAnnotationException hum?
   */
  public JCas getMergeCas(
      BratAnnotatorModel aBratAnnotatorModel,
      SourceDocument aDocument,
      Map<String, JCas> jCases,
      AnnotationDocument randomAnnotationDocument)
      throws UIMAException, ClassNotFoundException, IOException, BratAnnotationException {
    JCas mergeJCas = null;
    try {
      if (aBratAnnotatorModel.getMode().equals(Mode.AUTOMATION)
          || aBratAnnotatorModel.getMode().equals(Mode.CORRECTION)) {
        // Upgrading should be an explicit action during the opening of a document at the
        // end
        // of the open dialog - it must not happen during editing because the CAS addresses
        // are used as IDs in the UI
        // repository.upgradeCasAndSave(aDocument, aBratAnnotatorModel.getMode(),
        // aBratAnnotatorModel.getUser().getUsername());
        mergeJCas = repository.readCorrectionCas(aDocument);
      } else {
        // Upgrading should be an explicit action during the opening of a document at the
        // end
        // of the open dialog - it must not happen during editing because the CAS addresses
        // are used as IDs in the UI
        // repository.upgradeCasAndSave(aDocument, aBratAnnotatorModel.getMode(),
        // aBratAnnotatorModel.getUser().getUsername());
        mergeJCas = repository.readCurationCas(aDocument);
      }
    }
    // Create jcas, if it could not be loaded from the file system
    catch (Exception e) {

      if (aBratAnnotatorModel.getMode().equals(Mode.AUTOMATION)
          || aBratAnnotatorModel.getMode().equals(Mode.CORRECTION)) {
        mergeJCas = createCorrectionCas(mergeJCas, aBratAnnotatorModel, randomAnnotationDocument);
      } else {
        mergeJCas =
            createCurationCas(
                aBratAnnotatorModel.getProject(),
                randomAnnotationDocument,
                jCases,
                aBratAnnotatorModel.getAnnotationLayers());
      }
    }
    return mergeJCas;
  }