/** Get events filtered by program orgUnit and between dates. */
public static List<Event> getEvents(String program, String orgUnit, Date minDate, Date maxDate) {
try {
Response response;
String DHIS_URL = PreferencesState.getInstance().getDhisURL();
String startDate = EventExtended.format(minDate, EventExtended.AMERICAN_DATE_FORMAT);
String endDate =
EventExtended.format(
new Date(maxDate.getTime() + (8 * 24 * 60 * 60 * 1000)),
EventExtended.AMERICAN_DATE_FORMAT);
String url =
String.format(DHIS_URL + DHIS_CHECK_EVENT_API, program, orgUnit, startDate, endDate);
Log.d(TAG, url);
url = ServerAPIController.encodeBlanks(url);
response = ServerAPIController.executeCall(null, url, "GET");
if (!response.isSuccessful()) {
Log.e(TAG, "pushData (" + response.code() + "): " + response.body().string());
throw new IOException(response.message());
}
JSONObject events = new JSONObject(response.body().string());
ObjectMapper mapper = new ObjectMapper();
JsonNode jsonNode = mapper.convertValue(mapper.readTree(events.toString()), JsonNode.class);
return EventsWrapper.getEvents(jsonNode);
} catch (Exception ex) {
ex.printStackTrace();
return null;
}
}
@Test
public void serialization() {
String cron = "0/5 * * * * ?";
CronTrigger trigger =
TriggerBuilder.newTrigger()
.forJob("testJob", "testGroup")
.withIdentity("testTrigger", "testTriggerGroup")
.withSchedule(CronScheduleBuilder.cronSchedule(cron))
.usingJobData("timeout", 5)
.withDescription("A description!")
.build();
Map<String, String> triggerMap =
mapper.convertValue(trigger, new TypeReference<HashMap<String, String>>() {});
assertThat(triggerMap, hasKey("name"));
assertEquals("testTrigger", triggerMap.get("name"));
assertThat(triggerMap, hasKey("group"));
assertEquals("testTriggerGroup", triggerMap.get("group"));
assertThat(triggerMap, hasKey("jobName"));
assertEquals("testJob", triggerMap.get("jobName"));
CronTriggerImpl cronTrigger = mapper.convertValue(triggerMap, CronTriggerImpl.class);
assertEquals(trigger.getKey().getName(), cronTrigger.getKey().getName());
assertEquals(trigger.getKey().getGroup(), cronTrigger.getKey().getGroup());
assertEquals(trigger.getStartTime(), cronTrigger.getStartTime());
assertEquals(trigger.getCronExpression(), cronTrigger.getCronExpression());
assertEquals(trigger.getTimeZone(), cronTrigger.getTimeZone());
}
/** Override this to place result in non-standard location on document */
protected ActivityObject getEntityToExtend(ObjectNode rootDocument) {
if (this.configuration.getEntity().equals(HttpProcessorConfiguration.Entity.ACTIVITY))
return mapper.convertValue(rootDocument, ActivityObject.class);
else
return mapper.convertValue(
rootDocument.get(this.configuration.getEntity().toString()), ActivityObject.class);
}
/** Override this to place result in non-standard location on document */
protected ObjectNode setEntityToExtend(ObjectNode rootDocument, ActivityObject activityObject) {
if (this.configuration.getEntity().equals(HttpProcessorConfiguration.Entity.ACTIVITY))
return mapper.convertValue(activityObject, ObjectNode.class);
else
rootDocument.set(
this.configuration.getEntity().toString(),
mapper.convertValue(activityObject, ObjectNode.class));
return rootDocument;
}
public List<BpClass> getParents(String id, String ontology, String apiKey) throws IOException {
String url =
BP_API_BASE
+ BP_ONTOLOGIES
+ ontology
+ "/"
+ BP_CLASSES
+ id
+ "/parents"
+ "?include=prefLabel,hasChildren,created,synonym,definition";
HttpResponse response =
HttpUtil.makeHttpRequest(
Request.Get(url)
.addHeader("Authorization", Util.getBioPortalAuthHeader(apiKey))
.connectTimeout(connectTimeout)
.socketTimeout(socketTimeout));
int statusCode = response.getStatusLine().getStatusCode();
// Success
if (statusCode == 200) {
ObjectMapper mapper = new ObjectMapper();
JsonNode bpResult =
mapper.readTree(new String(EntityUtils.toByteArray(response.getEntity())));
List<BpClass> children = new ArrayList<>();
for (JsonNode n : bpResult) {
children.add(mapper.convertValue(n, BpClass.class));
}
return children;
} else {
throw new HTTPException(statusCode);
}
}
public List<BpTreeNode> getTree(String id, String ontology, String apiKey) throws IOException {
String url = BP_API_BASE + BP_ONTOLOGIES + ontology + "/" + BP_CLASSES + id + "/tree";
HttpResponse response =
HttpUtil.makeHttpRequest(
Request.Get(url)
.addHeader("Authorization", Util.getBioPortalAuthHeader(apiKey))
.connectTimeout(connectTimeout)
.socketTimeout(socketTimeout));
int statusCode = response.getStatusLine().getStatusCode();
// The tree was successfully retrieved
if (statusCode == 200) {
ObjectMapper mapper = new ObjectMapper();
JsonNode bpResult =
mapper.readTree(new String(EntityUtils.toByteArray(response.getEntity())));
List<BpTreeNode> nodes = new ArrayList<>();
for (JsonNode n : bpResult) {
nodes.add(mapper.convertValue(n, BpTreeNode.class));
}
return nodes;
} else {
throw new HTTPException(statusCode);
}
}
private HadoopDruidIndexerConfig testRunUpdateSegmentListIfDatasourcePathSpecIsUsed(
PathSpec datasourcePathSpec, Interval jobInterval) throws Exception {
HadoopIngestionSpec spec =
new HadoopIngestionSpec(
new DataSchema(
"foo",
null,
new AggregatorFactory[0],
new UniformGranularitySpec(
Granularity.DAY, null, ImmutableList.of(new Interval("2010-01-01/P1D"))),
jsonMapper),
new HadoopIOConfig(jsonMapper.convertValue(datasourcePathSpec, Map.class), null, null),
null);
spec = jsonMapper.readValue(jsonMapper.writeValueAsString(spec), HadoopIngestionSpec.class);
UsedSegmentLister segmentLister = EasyMock.createMock(UsedSegmentLister.class);
EasyMock.expect(
segmentLister.getUsedSegmentsForIntervals(
testDatasource, Lists.newArrayList(jobInterval)))
.andReturn(ImmutableList.of(SEGMENT));
EasyMock.replay(segmentLister);
spec =
HadoopIngestionSpec.updateSegmentListIfDatasourcePathSpecIsUsed(
spec, jsonMapper, segmentLister);
return HadoopDruidIndexerConfig.fromString(jsonMapper.writeValueAsString(spec));
}
public Pair<Integer, JsonNode> getErrorResponse() {
Map<String, List<String>> errors =
Collections.singletonMap(
"errors", Collections.singletonList(getMessage() == null ? toString() : getMessage()));
JsonNode responseBody = OBJECT_MAPPER.convertValue(errors, JsonNode.class);
return Pair.of(getStatus(), responseBody);
}
public BpClass find(String id, String ontology, String apiKey) throws HTTPException, IOException {
String url =
BP_API_BASE
+ BP_ONTOLOGIES
+ ontology
+ "/"
+ BP_CLASSES
+ id
+ "?include=prefLabel,hasChildren,created,synonym,definition";
HttpResponse response =
HttpUtil.makeHttpRequest(
Request.Get(url)
.addHeader("Authorization", Util.getBioPortalAuthHeader(apiKey))
.connectTimeout(connectTimeout)
.socketTimeout(socketTimeout));
int statusCode = response.getStatusLine().getStatusCode();
// The class was successfully retrieved
if (statusCode == 200) {
ObjectMapper mapper = new ObjectMapper();
JsonNode bpResult =
mapper.readTree(new String(EntityUtils.toByteArray(response.getEntity())));
return mapper.convertValue(bpResult, BpClass.class);
} else {
throw new HTTPException(statusCode);
}
}
protected <T> Object[] parseIn(Expression<?> path, JsonNode fieldValue)
throws QueryInfoException {
Class<?> javaType = path.getJavaType();
TypeFactory typeFactory = objectMapper.getTypeFactory();
ArrayType arrayType = typeFactory.constructArrayType(javaType);
return objectMapper.convertValue(fieldValue, arrayType);
}
/**
* make the excel file based on headers and contents which should have been set
*
* @param sheetName specified sheet name
* @return ExcelMaker itself
* @throws IllegalArgumentException only support String, Integer, Long, Double, Date, null as cell
* data.
*/
public ExcelMaker make(String sheetName) throws IllegalArgumentException {
// check if headers and contents set
if (!contextReady()) {
throw new IllegalArgumentException("invalid headers or contents");
}
Sheet sheet = sheetName == null ? workbook.createSheet() : workbook.createSheet(sheetName);
// write the display headers as the 1st row in the sheet
int rowNum = 0;
Row headerRow = sheet.createRow(rowNum++);
if (displayHeaders != null) {
for (int cellNum = 0; cellNum < displayHeaders.size(); cellNum++) {
String header = displayHeaders.get(cellNum);
Cell cell = headerRow.createCell(cellNum);
cell.setCellValue(header);
}
} else { // if display headers not set, use headers as default
for (int cellNum = 0; cellNum < headers.size(); cellNum++) {
String header = headers.get(cellNum);
Cell cell = headerRow.createCell(cellNum);
cell.setCellValue(header);
}
}
// parse each Object in content list and write as a row
for (Object content : contents) {
Map<String, Object> headerMap =
objectMapper.convertValue(content, new TypeReference<HashMap<String, Object>>() {});
Row row = sheet.createRow(rowNum++);
// only find properties that declared by headers
for (int cellNum = 0; cellNum < headers.size(); cellNum++) {
String header = headers.get(cellNum);
Cell cell = row.createCell(cellNum);
Object obj = headerMap.get(header);
if (obj == null) {
obj = "";
}
if (obj instanceof String) {
cell.setCellValue((String) obj);
} else if (obj instanceof Integer) {
cell.setCellValue((Integer) obj);
} else if (obj instanceof Long) {
cell.setCellValue((Long) obj);
} else if (obj instanceof Double) {
cell.setCellValue((Double) obj);
} else if (obj instanceof Date) {
cell.setCellValue((Date) obj);
} else {
throw new IllegalArgumentException("unsupported cell type");
}
}
}
return this;
}
private static boolean apply(Object objectToSerialize, String str, ObjectMapper mapper) {
final ObjectNode lhs = mapper.convertValue(objectToSerialize, ObjectNode.class);
ObjectNode rhs = null;
try {
rhs = mapper.readValue(str, ObjectNode.class);
} catch (IOException e) {
LOGGER.error("Failed to read value", e);
}
return lhs.equals(rhs);
}
@DELETE
@Path("/bulk")
public Response bulkDelete(String data) throws CimbleException {
try {
ObjectMapper mapper = new ObjectMapper();
List<E> list = (List<E>) mapper.convertValue(mapper.readValue(data, dtoType), filterType);
return bulkDelete(list);
} catch (Exception e) {
e.printStackTrace();
throw new CimbleException("Error in delete()", e);
}
}
protected <T> T parseType(JsonNode fieldValue, Class<T> javaType) throws QueryInfoException {
T result;
try {
result = objectMapper.convertValue(fieldValue, javaType);
} catch (IllegalArgumentException e) {
String message = String.format("Could not parse [%s] as [%s]", fieldValue, javaType);
throw new QueryInfoException(message, e);
}
return result;
}
/**
* Simple test to verify that byte[] values can be handled properly when converting, as long as
* there is metadata (from POJO definitions).
*/
public void testIssue709() throws Exception {
byte[] inputData = new byte[] {1, 2, 3};
ObjectNode node = MAPPER.createObjectNode();
node.put("data", inputData);
Issue709Bean result = MAPPER.treeToValue(node, Issue709Bean.class);
String json = MAPPER.writeValueAsString(node);
Issue709Bean resultFromString = MAPPER.readValue(json, Issue709Bean.class);
Issue709Bean resultFromConvert = MAPPER.convertValue(node, Issue709Bean.class);
// all methods should work equally well:
Assert.assertArrayEquals(inputData, resultFromString.data);
Assert.assertArrayEquals(inputData, resultFromConvert.data);
Assert.assertArrayEquals(inputData, result.data);
}
@Override
public Supplier<Pair<Integer, JsonNode>> handleGet(StateContext state) {
JsonApiDocument doc = new JsonApiDocument();
RequestScope requestScope = state.getRequestScope();
ObjectMapper mapper = requestScope.getMapper().getObjectMapper();
Optional<MultivaluedMap<String, String>> queryParams = requestScope.getQueryParams();
Map<String, Relationship> relationships = record.toResource().getRelationships();
Relationship relationship = null;
if (relationships != null) {
relationship = relationships.get(relationshipName);
}
// Handle valid relationship
if (relationship != null) {
// Set data
Data<Resource> data = relationship.getData();
doc.setData(data);
// Run include processor
DocumentProcessor includedProcessor = new IncludedProcessor();
includedProcessor.execute(doc, record, queryParams);
return () -> Pair.of(HttpStatus.SC_OK, mapper.convertValue(doc, JsonNode.class));
}
// Handle no data for relationship
if (relationshipType.isToMany()) {
doc.setData(new Data<>(new ArrayList<>()));
} else if (relationshipType.isToOne()) {
doc.setData(new Data<>((Resource) null));
} else {
throw new IllegalStateException("Failed to PATCH a relationship");
}
return () -> Pair.of(HttpStatus.SC_OK, mapper.convertValue(doc, JsonNode.class));
}
private JsonNode createProduct(JsonNode node, String userName) throws Exception {
ObjectMapper om = new ObjectMapper();
ArrayNode anode = om.createArrayNode();
if (node.isArray()) {
Iterator<JsonNode> nodeiterator = node.iterator();
while (nodeiterator.hasNext()) {
ProductBack cbase = om.convertValue(nodeiterator.next(), ProductBack.class);
anode.add(createProductToDb(om, cbase, userName));
}
} else {
ProductBack cbase = JSON.parseObject(node.asText(), ProductBack.class);
anode.add(createProductToDb(om, cbase, userName));
}
return anode;
}
// Return given object as a String
// AG
static String getStringFromObject(Object o) {
String temp = "";
if (o instanceof String) temp = mapper.convertValue(o, String.class);
return temp;
}
public static <T> T convertValue(Object value, Class<T> type) {
return OBJECT_MAPPER.convertValue(value, type);
}
public AppenderatorTester(final int maxRowsInMemory, final File basePersistDirectory) {
objectMapper = new DefaultObjectMapper();
objectMapper.registerSubtypes(LinearShardSpec.class);
final Map<String, Object> parserMap =
objectMapper.convertValue(
new MapInputRowParser(
new JSONParseSpec(
new TimestampSpec("ts", "auto", null), new DimensionsSpec(null, null, null))),
Map.class);
schema =
new DataSchema(
DATASOURCE,
parserMap,
new AggregatorFactory[] {
new CountAggregatorFactory("count"), new LongSumAggregatorFactory("met", "met")
},
new UniformGranularitySpec(Granularity.MINUTE, QueryGranularities.NONE, null),
objectMapper);
tuningConfig =
new RealtimeTuningConfig(
maxRowsInMemory,
null,
null,
basePersistDirectory,
null,
null,
null,
null,
null,
null,
0,
0,
null,
null);
metrics = new FireDepartmentMetrics();
queryExecutor = Execs.singleThreaded("queryExecutor(%d)");
indexIO =
new IndexIO(
objectMapper,
new ColumnConfig() {
@Override
public int columnCacheSizeBytes() {
return 0;
}
});
indexMerger = new IndexMerger(objectMapper, indexIO);
emitter =
new ServiceEmitter(
"test",
"test",
new LoggingEmitter(
new Logger(AppenderatorTester.class), LoggingEmitter.Level.INFO, objectMapper));
emitter.start();
EmittingLogger.registerEmitter(emitter);
dataSegmentPusher =
new DataSegmentPusher() {
@Deprecated
@Override
public String getPathForHadoop(String dataSource) {
return getPathForHadoop();
}
@Override
public String getPathForHadoop() {
throw new UnsupportedOperationException();
}
@Override
public DataSegment push(File file, DataSegment segment) throws IOException {
pushedSegments.add(segment);
return segment;
}
};
appenderator =
Appenderators.createRealtime(
schema,
tuningConfig,
metrics,
dataSegmentPusher,
objectMapper,
indexIO,
indexMerger,
new DefaultQueryRunnerFactoryConglomerate(
ImmutableMap.<Class<? extends Query>, QueryRunnerFactory>of(
TimeseriesQuery.class,
new TimeseriesQueryRunnerFactory(
new TimeseriesQueryQueryToolChest(
new IntervalChunkingQueryRunnerDecorator(
queryExecutor, QueryRunnerTestHelper.NOOP_QUERYWATCHER, emitter)),
new TimeseriesQueryEngine(),
QueryRunnerTestHelper.NOOP_QUERYWATCHER))),
new DataSegmentAnnouncer() {
@Override
public void announceSegment(DataSegment segment) throws IOException {}
@Override
public void unannounceSegment(DataSegment segment) throws IOException {}
@Override
public void announceSegments(Iterable<DataSegment> segments) throws IOException {}
@Override
public void unannounceSegments(Iterable<DataSegment> segments) throws IOException {}
@Override
public boolean isAnnounced(DataSegment segment) {
return false;
}
},
emitter,
queryExecutor,
MapCache.create(2048),
new CacheConfig());
}
protected Response createExecutionVariable(
Execution execution,
boolean override,
int variableType,
HttpServletRequest httpServletRequest,
UriInfo uriInfo) {
Object result = null;
Response.ResponseBuilder responseBuilder = Response.ok();
List<RestVariable> inputVariables = new ArrayList<>();
List<RestVariable> resultVariables = new ArrayList<>();
if (Utils.isApplicationJsonRequest(httpServletRequest)) {
try {
ObjectMapper objectMapper = new ObjectMapper();
@SuppressWarnings("unchecked")
List<Object> variableObjects =
(List<Object>) objectMapper.readValue(httpServletRequest.getInputStream(), List.class);
for (Object restObject : variableObjects) {
RestVariable restVariable = objectMapper.convertValue(restObject, RestVariable.class);
inputVariables.add(restVariable);
}
} catch (Exception e) {
throw new ActivitiIllegalArgumentException(
"Failed to serialize to a RestVariable instance", e);
}
} else if (Utils.isApplicationXmlRequest(httpServletRequest)) {
JAXBContext jaxbContext = null;
try {
jaxbContext = JAXBContext.newInstance(RestVariableCollection.class);
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
RestVariableCollection restVariableCollection =
(RestVariableCollection)
jaxbUnmarshaller.unmarshal(httpServletRequest.getInputStream());
if (restVariableCollection == null) {
throw new ActivitiIllegalArgumentException(
"xml request body could not be transformed to a "
+ "RestVariable Collection instance.");
}
List<RestVariable> restVariableList = restVariableCollection.getRestVariables();
if (restVariableList.size() == 0) {
throw new ActivitiIllegalArgumentException(
"xml request body could not identify any rest " + "variables to be updated");
}
for (RestVariable restVariable : restVariableList) {
inputVariables.add(restVariable);
}
} catch (JAXBException | IOException e) {
throw new ActivitiIllegalArgumentException(
"xml request body could not be transformed to a " + "RestVariable instance.", e);
}
}
if (inputVariables.size() == 0) {
throw new ActivitiIllegalArgumentException(
"Request didn't contain a list of variables to create.");
}
RestVariable.RestVariableScope sharedScope = null;
RestVariable.RestVariableScope varScope = null;
Map<String, Object> variablesToSet = new HashMap<String, Object>();
for (RestVariable var : inputVariables) {
// Validate if scopes match
varScope = var.getVariableScope();
if (var.getName() == null) {
throw new ActivitiIllegalArgumentException("Variable name is required");
}
if (varScope == null) {
varScope = RestVariable.RestVariableScope.LOCAL;
}
if (sharedScope == null) {
sharedScope = varScope;
}
if (varScope != sharedScope) {
throw new ActivitiIllegalArgumentException(
"Only allowed to update multiple variables in the same scope.");
}
if (!override && hasVariableOnScope(execution, var.getName(), varScope)) {
throw new BPMNConflictException(
"Variable '"
+ var.getName()
+ "' is already present on execution '"
+ execution.getId()
+ "'.");
}
Object actualVariableValue = new RestResponseFactory().getVariableValue(var);
variablesToSet.put(var.getName(), actualVariableValue);
resultVariables.add(
new RestResponseFactory()
.createRestVariable(
var.getName(),
actualVariableValue,
varScope,
execution.getId(),
variableType,
false,
uriInfo.getBaseUri().toString()));
}
if (!variablesToSet.isEmpty()) {
RuntimeService runtimeService = BPMNOSGIService.getRumtimeService();
if (sharedScope == RestVariable.RestVariableScope.LOCAL) {
runtimeService.setVariablesLocal(execution.getId(), variablesToSet);
} else {
if (execution.getParentId() != null) {
// Explicitly set on parent, setting non-local variables on execution itself will override
// local-variables if exists
runtimeService.setVariables(execution.getParentId(), variablesToSet);
} else {
// Standalone task, no global variables possible
throw new ActivitiIllegalArgumentException(
"Cannot set global variables on execution '"
+ execution.getId()
+ "', task is not part of process.");
}
}
}
RestVariableCollection restVariableCollection = new RestVariableCollection();
restVariableCollection.setRestVariables(resultVariables);
responseBuilder.entity(restVariableCollection);
return responseBuilder.status(Response.Status.CREATED).build();
}
// Return given object as a double
// AG
static double getDoubleFromObject(Object o) {
double temp = 0.0;
if (o instanceof Double) temp = mapper.convertValue(o, Double.class);
return temp;
}
// Return given object as a list
// AG
static List<?> getListFromObject(Object o) {
@SuppressWarnings("rawtypes")
List<?> temp = new LinkedList();
if (o instanceof List<?>) temp = mapper.convertValue(o, List.class);
return temp;
}
private Pair<Integer, JsonNode> buildResponse(Map<String, List<String>> errors) {
JsonNode responseBody = OBJECT_MAPPER.convertValue(errors, JsonNode.class);
return Pair.of(getStatus(), responseBody);
}
@Before
public void setUp() throws Exception {
final File tmpDir = Files.createTempDir();
tmpDir.deleteOnExit();
ObjectMapper jsonMapper = new DefaultObjectMapper();
schema =
new DataSchema(
"test",
jsonMapper.convertValue(
new StringInputRowParser(
new JSONParseSpec(
new TimestampSpec("timestamp", "auto", null),
new DimensionsSpec(null, null, null))),
Map.class),
new AggregatorFactory[] {new CountAggregatorFactory("rows")},
new UniformGranularitySpec(Granularity.HOUR, QueryGranularity.NONE, null),
jsonMapper);
announcer = EasyMock.createMock(DataSegmentAnnouncer.class);
announcer.announceSegment(EasyMock.<DataSegment>anyObject());
EasyMock.expectLastCall().anyTimes();
segmentPublisher = EasyMock.createNiceMock(SegmentPublisher.class);
dataSegmentPusher = EasyMock.createNiceMock(DataSegmentPusher.class);
serverView = EasyMock.createMock(FilteredServerView.class);
serverView.registerSegmentCallback(
EasyMock.<Executor>anyObject(),
EasyMock.<ServerView.SegmentCallback>anyObject(),
EasyMock.<Predicate<DataSegment>>anyObject());
EasyMock.expectLastCall().anyTimes();
emitter = EasyMock.createMock(ServiceEmitter.class);
EasyMock.replay(announcer, segmentPublisher, dataSegmentPusher, serverView, emitter);
tuningConfig =
new RealtimeTuningConfig(
1,
null,
null,
null,
new IntervalStartVersioningPolicy(),
rejectionPolicy,
null,
null,
null,
null,
null,
null,
null);
realtimePlumberSchool =
new RealtimePlumberSchool(
emitter,
new DefaultQueryRunnerFactoryConglomerate(
Maps.<Class<? extends Query>, QueryRunnerFactory>newHashMap()),
dataSegmentPusher,
announcer,
segmentPublisher,
serverView,
MoreExecutors.sameThreadExecutor());
metrics = new FireDepartmentMetrics();
plumber = (RealtimePlumber) realtimePlumberSchool.findPlumber(schema, tuningConfig, metrics);
}
// Return given object as an int
// AG
static int getIntFromObject(Object o) {
int temp = 0;
if (o instanceof Integer) temp = mapper.convertValue(o, Integer.class);
return temp;
}
