protected void populateSearch(String[] input, ExampleSearch exampleSearch) {
ArrayDesignSearch search = (ArrayDesignSearch) exampleSearch;
ArrayDesign example = new ArrayDesign();
if (headerIndexMap.get(API) < input.length && !input[headerIndexMap.get(API)].equals("")) {
search.setApi(input[headerIndexMap.get(API)].trim());
}
if (headerIndexMap.get(NAME) < input.length && !input[headerIndexMap.get(NAME)].equals(""))
example.setName(input[headerIndexMap.get(NAME)].trim());
if (headerIndexMap.get(LSID) < input.length && !input[headerIndexMap.get(LSID)].equals(""))
example.setLsid(input[headerIndexMap.get(LSID)].trim());
if (headerIndexMap.get(PROVIDER) < input.length
&& !input[headerIndexMap.get(PROVIDER)].equals("")) {
/*ArrayProvider provider = new ArrayProvider();
provider.setName(input[headerIndexMap.get(PROVIDER)]);
example.setArrayProvider(provider);*/
ArrayProvider provider = null;
try {
provider = apiFacade.getArrayProvider(search.getApi(), input[headerIndexMap.get(PROVIDER)]);
} catch (Exception e) {
log.error("Error retrieving ArrayProvider for ArrayDesign search", e);
provider = new ArrayProvider();
provider.setName(input[headerIndexMap.get(PROVIDER)]);
}
if (provider != null) {
example.setArrayProvider(provider);
}
}
if (headerIndexMap.get(ASSAY_TYPE) < input.length
&& !input[headerIndexMap.get(ASSAY_TYPE)].equals("")) {
example.getAssayTypes().add(new AssayType(input[headerIndexMap.get(ASSAY_TYPE)]));
}
if (headerIndexMap.get(NULL) < input.length && !input[headerIndexMap.get(NULL)].equals("")) {
example = null;
}
search.setArrayDesign(example);
if (headerIndexMap.get(TEST_CASE) < input.length
&& !input[headerIndexMap.get(TEST_CASE)].equals(""))
search.setTestCase(Float.parseFloat(input[headerIndexMap.get(TEST_CASE)].trim()));
if (headerIndexMap.get(EXPECTED_RESULTS) < input.length
&& !input[headerIndexMap.get(EXPECTED_RESULTS)].equals(""))
search.setExpectedResults(
Integer.parseInt(input[headerIndexMap.get(EXPECTED_RESULTS)].trim()));
if (headerIndexMap.get(MIN_RESULTS) < input.length
&& !input[headerIndexMap.get(MIN_RESULTS)].equals(""))
search.setMinResults(Integer.parseInt(input[headerIndexMap.get(MIN_RESULTS)].trim()));
if (headerIndexMap.get(EXPECTED_PROVIDER) < input.length
&& !input[headerIndexMap.get(EXPECTED_PROVIDER)].equals(""))
search.setExpectedProvider(input[headerIndexMap.get(EXPECTED_PROVIDER)].trim());
if (headerIndexMap.get(EXPECTED_ORGANISM) < input.length
&& !input[headerIndexMap.get(EXPECTED_ORGANISM)].equals(""))
search.setExpectedOrganism(input[headerIndexMap.get(EXPECTED_ORGANISM)]);
}
