/**
* Method that makes the necessary JComponents for the SettingsPanel. The used JComponents are: a
* textfield for the cluster name, a TextOrGraphPanel for choosing between text and graph input,
* two comboboxes for the distributions and the corrections, a textfield for the alpha, two
* comboboxes for the option against what cluster should be tested and one for the option how many
* categories must be displayed int the graph, two SettingsOpenPanels for choosing the annotation
* and ontology file, a SettingsSavePanel for the data-file and a button to start the
* calculations.
*/
public void makeJComponents() {
helpButton = new JButton("Help");
helpButton.setMnemonic(KeyEvent.VK_H);
helpButton.addActionListener(new HelpButtonActionListener(this, openBrowserService));
saveSettingsButton = new JButton("Save settings as default");
saveSettingsButton.setMnemonic(KeyEvent.VK_S);
saveSettingsButton.addActionListener(new SaveSettingsButtonActionListener(this));
// JComboboxes.
testBox = new JComboBox(testsArray);
testBox.setSelectedItem(bingo_props.getProperty("tests_def"));
correctionBox = new JComboBox(correctionArray);
correctionBox.setSelectedItem(bingo_props.getProperty("correction_def"));
categoriesBox = new JComboBox(categoriesArray);
categoriesBox.setSelectedItem(bingo_props.getProperty("categories_def"));
clusterVsPanel =
new ChooseRefSetPanel(
this, bingoDir, clusterVsArray, bingo_props.getProperty("refset_def"));
// JTextField.
alphaField = new JTextField(bingo_props.getProperty("signif_def"));
nameField = new JTextField("");
// OverUnderPanel
overUnderPanel = new OverUnderPanel();
// OverUnderPanel
vizPanel = new VizPanel();
// TextOrGraphPanel
textOrGraphPanel = new TextOrGraphPanel();
// JLabels.
overUnderLabel = new JLabel(overunder_label);
nameLabel = new JLabel(clustername_label);
testLabel = new JLabel(test_label);
correctionLabel = new JLabel(correction_label);
alphaLabel = new JLabel(sig_label);
categoriesLabel = new JLabel(category_label);
clusterVsLabel = new JLabel(ref_label);
testLabel.setForeground(Color.black);
correctionLabel.setForeground(Color.black);
alphaLabel.setForeground(Color.black);
categoriesLabel.setForeground(Color.black);
clusterVsLabel.setForeground(Color.black);
ecLabel = new JLabel(ec_label);
// annotationPanel.
annotationLabel = new JLabel(annotation_label);
annotationPanel =
new ChooseAnnotationPanel(
this, bingoDir, params.getSpeciesLabels(), bingo_props.getProperty("species_def"));
// evidence code Field
ecField = new JTextField();
// ontologyPanel.
namespaceLabel = new JLabel(namespace_label);
namespacePanel =
new ChooseNamespacePanel(
this, bingoDir, params.getNamespaceLabels(), bingo_props.getProperty("namespace_def"));
ontologyLabel = new JLabel(ontology_label);
ontologyPanel =
new ChooseOntologyPanel(
this,
bingoDir,
params.getOntologyLabels(),
bingo_props.getProperty("ontology_file_def"));
// Creating SettingsSavePanels.
dataPanel = new SaveResultsPanel("Data", this, bingoDir);
// the bingo-button to start the calculations.
bingoButton = new JButton("Start bingo");
bingoButton.setMnemonic(KeyEvent.VK_B);
bingoButton.addActionListener(new SettingsPanelActionListener(params, this, adapter));
}
