/**
* parse parameters of all entries
*
* @param in
*/
private svm_problem parsePara(ArrayList<TrainingEntry> in, String taxo) {
int num = 0;
for (TrainingEntry t : in) num += t.NumOfMi();
svm_node[][] data = new svm_node[num][];
int i = 0;
for (TrainingEntry mi : in) {
pri = mi.getPriRNA();
pri.setPriPara();
for (int j = 0; j < mi.NumOfMi(); j++) {
pri.process(mi.getStart(j), mi.getSize(j), mi.getStrand(j));
ps = new ParaSummary(pri, pri.getPreRNA(), pri.getMiRNA());
data[i++] = svm.predictMatrix(mi.getLabel(j), ps.paraMatrix(taxo));
}
}
return svm.trainMatrix(data);
}
