private void showAddNewComment() {
newCommentLayout.clear();
final TextArea comment = new TextArea();
comment.setWidth("100%");
newCommentLayout.add(comment);
Button ok = new Button(constants.OK());
Button cancel = new Button(constants.Cancel());
ok.addClickHandler(
new ClickHandler() {
public void onClick(ClickEvent sender) {
sendNewComment(comment.getText());
}
});
cancel.addClickHandler(
new ClickHandler() {
public void onClick(ClickEvent sender) {
showNewCommentButton();
}
});
HorizontalPanel hp = new HorizontalPanel();
hp.add(ok);
hp.add(cancel);
newCommentLayout.add(hp);
comment.setFocus(true);
}
public void init() {
urlTextField = new TextField();
urlTextField.setWidth("150px");
phoneNoField = new TextField();
phoneNoField.setWidth("150px");
messageField = new TextArea();
messageField.setWidth("150px");
}
BuilderDrawer() {
if (drawerResource != null) {
Embedded drawerBkg = new Embedded(null, drawerResource);
addComponent(drawerBkg, "top:0px;left:0px");
}
content = new TextArea();
// only shows if no focus, and if we don't have focus, it's not normally showing
// content.setInputPrompt("Type here to add to this card chain.");
content.setWordwrap(true);
content.setImmediate(true);
content.setTextChangeEventMode(TextChangeEventMode.LAZY);
content.setTextChangeTimeout(500);
// cause exception w/ 2 windows?
// content.setDebugId(CardTypeManager.getCardContentDebugId(ct));
content.setId(
CardDebug.getCardContentDebugId(ct)); // CardTypeManager.getCardContentDebugId(ct));
content.addTextChangeListener(new characterTypedHandler());
content.setWidth(CARDLISTHEADER_DRAWER_TEXT_W);
content.setHeight(CARDLISTHEADER_DRAWER_TEXT_H);
content.addStyleName("m-white-background");
addComponent(content, CARDLISTHEADER_DRAWER_TEXT_POS);
count = new Label("0/140");
count.setWidth(CARDLISTHEADER_DRAWER_COUNT_W);
count.setHeight(CARDLISTHEADER_DRAWER_COUNT_H);
count.addStyleName("m-cardbuilder-count-text");
addComponent(count, CARDLISTHEADER_DRAWER_COUNT_POS);
cancelButt = new NativeButton("cancel");
cancelButt.setWidth(CARDLISTHEADER_DRAWER_CANCEL_W);
cancelButt.setHeight(CARDLISTHEADER_DRAWER_CANCEL_H);
cancelButt.addStyleName("borderless");
cancelButt.addStyleName("m-cardbuilder-button-text");
cancelButt.addClickListener(new CancelHandler());
addComponent(cancelButt, CARDLISTHEADER_DRAWER_CANCEL_POS);
submitButt = new NativeButton("submit");
// cause exception w/ 2 windows?
// submitButt.setDebugId(CardTypeManager.getCardSubmitDebugId(ct));
submitButt.setId(
CardDebug.getCardSubmitDebugId(ct)); // CardTypeManager.getCardSubmitDebugId(ct));
submitButt.setWidth(CARDLISTHEADER_DRAWER_OKBUTT_W);
submitButt.setHeight(CARDLISTHEADER_DRAWER_OKBUTT_H);
submitButt.addStyleName("borderless");
submitButt.addStyleName("m-cardbuilder-button-text");
submitButt.addClickListener(new CardPlayHandler());
addComponent(submitButt, CARDLISTHEADER_DRAWER_OKBUTT_POS);
setWidth(CARDLISTHEADER_DRAWER_W);
setHeight(CARDLISTHEADER_DRAWER_H);
}
public MainScreen() {
Label loginLabel =
new Label("Welcome " + VaadinSession.getCurrent().getAttribute(String.class));
HorizontalLayout menuBar = new HorizontalLayout(loginLabel);
MessageTable table = new MessageTable();
TextArea messageArea = new TextArea();
messageArea.setWidth(100, PERCENTAGE);
Button sendButton = new Button("Send");
sendButton.addClickListener(new SendMessageClickListener(table, messageArea));
HorizontalLayout lowerBar = new HorizontalLayout(messageArea, sendButton);
lowerBar.setWidth(100, PERCENTAGE);
lowerBar.setSpacing(true);
VerticalLayout mainLayout = new VerticalLayout(menuBar, table, lowerBar);
mainLayout.setSpacing(true);
mainLayout.setMargin(true);
mainLayout.setSizeFull();
setCompositionRoot(mainLayout);
}
@SuppressWarnings({"deprecation", "serial"})
private void updateComponents(final User user) {
if (container != null) {
container.removeAllComponents();
}
container = new Panel();
root = new Panel();
root.setStyle(Reindeer.PANEL_LIGHT);
container.setHeight("100%");
container.setStyle(Reindeer.PANEL_LIGHT);
setCompositionRoot(container);
// Create the Form
newExpForm = new Form();
newExpForm.setCaption("New Experiment");
newExpForm.setWriteThrough(false); // we want explicit 'apply'
newExpForm.setInvalidCommitted(false); // no invalid values in data model
// Determines which properties are shown, and in which order:
expNameField = new TextField("Experiment Name:");
expNameField.setStyle(Reindeer.TEXTFIELD_SMALL);
expNameField.setRequired(true);
expNameField.setRequiredError("EXPERIMENT NAME CAN NOT BE EMPTY!");
expNameField.setWidth("350px");
expNameField.setMaxLength(70);
speciesField = new TextField("Species:");
speciesField.setStyle(Reindeer.TEXTFIELD_SMALL);
speciesField.setRequired(true);
speciesField.setRequiredError("EXPERIMENT SPECIES CAN NOT BE EMPTY!");
speciesField.setWidth("350px");
speciesField.setMaxLength(70);
sampleTypeField = new TextField("Sample Type:");
sampleTypeField.setStyle(Reindeer.TEXTFIELD_SMALL);
sampleTypeField.setRequired(true);
sampleTypeField.setRequiredError("EXPERIMENT SAMPLE TYPE CAN NOT BE EMPTY!");
sampleTypeField.setWidth("350px");
sampleTypeField.setMaxLength(70);
sampleProcessingField = new TextField("Sample Processing:");
sampleProcessingField.setStyle(Reindeer.TEXTFIELD_SMALL);
sampleProcessingField.setRequired(true);
sampleProcessingField.setRequiredError("EXPERIMENT SAMPLE PROCESSING CAN NOT BE EMPTY!");
sampleProcessingField.setWidth("350px");
sampleProcessingField.setMaxLength(70);
instrumentTypeField = new TextField("Instrument Type:");
instrumentTypeField.setStyle(Reindeer.TEXTFIELD_SMALL);
instrumentTypeField.setRequired(true);
instrumentTypeField.setRequiredError("EXPERIMENT INSTURMENT TYPE CAN NOT BE EMPTY!");
instrumentTypeField.setWidth("350px");
instrumentTypeField.setMaxLength(70);
fragModeField = new TextField("Frag Mode:");
fragModeField.setStyle(Reindeer.TEXTFIELD_SMALL);
fragModeField.setRequired(true);
fragModeField.setRequiredError("EXPERIMENT FRAG MODE CAN NOT BE EMPTY!");
fragModeField.setWidth("350px");
fragModeField.setMaxLength(70);
UploadedByNameField = new TextField("Uploaded By:");
UploadedByNameField.setStyle(Reindeer.TEXTFIELD_SMALL);
UploadedByNameField.setRequired(true);
UploadedByNameField.setRequiredError("EXPERIMENT UPLOADED BY CAN NOT BE EMPTY!");
UploadedByNameField.setValue(user.getUsername());
UploadedByNameField.setEnabled(false);
UploadedByNameField.setWidth("350px");
UploadedByNameField.setMaxLength(70);
emailField = new TextField("Email:");
emailField.setStyle(Reindeer.TEXTFIELD_SMALL);
emailField.setRequired(true);
emailField.setValue(user.getEmail());
emailField.setEnabled(false);
emailField.setRequiredError("EXPERIMENT EMAIL CAN NOT BE EMPTY!");
emailField.setWidth("350px");
emailField.setMaxLength(70);
descriptionField = new TextArea("Description:");
descriptionField.setStyle(Reindeer.TEXTFIELD_SMALL);
descriptionField.setRequired(true);
descriptionField.setRequiredError("EXPERIMENT Description CAN NOT BE EMPTY!");
descriptionField.setWidth("350px");
descriptionField.setMaxLength(950);
publicationLinkField = new TextField("Publication Link:");
publicationLinkField.setStyle(Reindeer.TEXTFIELD_SMALL);
publicationLinkField.setWidth("350px");
publicationLinkField.setMaxLength(300);
newExpForm.addField(Integer.valueOf(1), expNameField);
newExpForm.addField(Integer.valueOf(2), descriptionField);
newExpForm.addField(Integer.valueOf(3), speciesField);
newExpForm.addField(Integer.valueOf(4), sampleTypeField);
newExpForm.addField(Integer.valueOf(5), sampleProcessingField);
newExpForm.addField(Integer.valueOf(6), instrumentTypeField);
newExpForm.addField(Integer.valueOf(7), fragModeField);
newExpForm.addField(Integer.valueOf(8), UploadedByNameField);
newExpForm.addField(Integer.valueOf(9), emailField);
newExpForm.addField(Integer.valueOf(10), publicationLinkField);
// Add form to layout
container.addComponent(newExpForm);
Panel p = new Panel();
Label l =
new Label(
"<h4 style='color:blue'>Or Update Existing Experiments !</h4><h4 style='color:blue'>For New Experiment Please Leave Experiment ID Blank!</h4><h4 style='color:blue'><strong style='color:red'>* </strong> For New Experiment Please Remember to Upload Protein file first!</h4>");
l.setContentMode(Label.CONTENT_XHTML);
p.addComponent(l);
container.addComponent(p);
// Create the Form
Form existExpForm = new Form();
existExpForm.setCaption("Exist Experiments");
expList = eh.getExperiments(null);
List<String> strExpList = new ArrayList<String>();
for (ExperimentBean exp : expList.values()) {
if (user.getEmail().equalsIgnoreCase("*****@*****.**")
|| exp.getEmail().equalsIgnoreCase(user.getEmail())) {
String str = exp.getExpId() + " " + exp.getName() + " ( " + exp.getUploadedByName() + " )";
strExpList.add(str);
}
}
select = new Select("Experiment ID", strExpList);
select.setImmediate(true);
select.addListener(
new Property.ValueChangeListener() {
@Override
public void valueChange(ValueChangeEvent event) {
Object o = select.getValue();
if (o != null) {
String str = select.getValue().toString();
String[] strArr = str.split("\t");
int id = (Integer.valueOf(strArr[0]));
ExperimentBean expDet = expList.get(id);
if (expDetails != null) {
expDetails.removeAllComponents();
if (expDet.getProteinsNumber() == 0) {
Label l = new Label("<h4 style='color:red'>1) Protein File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>1) Protein File is Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
if (expDet.getFractionsNumber() == 0) {
Label l = new Label("<h4 style='color:red'>2) Fraction File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>2) Fraction File Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
// if (expDet.getFractionRange() == 0) {
// Label l = new Label("<h4 style='color:red'>3) Fraction
// Range File is Missing</h4>");
// l.setContentMode(Label.CONTENT_XHTML);
// expDetails.addComponent(l);
// } else {
// Label l = new Label("<h4 style='color:blue'>3)
// Fraction Range File Uploaded</h4>");
// l.setContentMode(Label.CONTENT_XHTML);
// expDetails.addComponent(l);
// }
if (expDet.getPeptidesNumber() == 0) {
Label l = new Label("<h4 style='color:red'>3) Peptides File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>3) Peptides File Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
}
} else {
expDetails.removeAllComponents();
Label labelDetails =
new Label(
"<h4 style='color:red;'>Please Select Experiment To Show the Details.</h4>");
labelDetails.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(labelDetails);
}
}
});
select.setWidth("60%");
existExpForm.addField(Integer.valueOf(1), select);
// Add form to layout
VerticalLayout vlo = new VerticalLayout();
if (hslo != null) {
vlo.removeComponent(hslo);
}
hslo = new HorizontalLayout();
hslo.setSizeFull();
hslo.addComponent(existExpForm);
vlo.addComponent(hslo);
if (removeExperimentLayout != null) {
hslo.removeComponent(removeExperimentLayout);
}
removeExperimentLayout = this.getRemoveForm(user.getEmail());
hslo.addComponent(removeExperimentLayout);
hslo.setComponentAlignment(removeExperimentForm, Alignment.MIDDLE_CENTER);
vlo.addComponent(hslo);
container.addComponent(vlo);
// Create the Upload component.
upload = new Upload(null, this);
upload.setStyleName("small");
upload.setVisible(true);
upload.setHeight("30px");
upload.setButtonCaption("ADD / EDIT EXPERIMENT !");
// *****************************************************
upload.addListener(
new Upload.StartedListener() {
@SuppressWarnings("static-access")
@Override
public void uploadStarted(StartedEvent event) {
try {
Thread.currentThread().sleep(1000);
Thread t =
new Thread(
new Runnable() {
@Override
public void run() {
pi.setVisible(true);
}
});
t.start();
t.join();
} catch (InterruptedException e) {
}
mainTabs.setReadOnly(true);
subTabs.setReadOnly(true);
}
});
upload.addListener(
new Upload.FinishedListener() {
@Override
public void uploadFinished(FinishedEvent event) {
pi.setVisible(false);
mainTabs.setReadOnly(false);
subTabs.setReadOnly(false);
file = new File(event.getFilename());
}
});
// ***********************************
upload.addListener((Upload.SucceededListener) this);
upload.addListener((Upload.FailedListener) this);
if (helpNote != null) {
vlo.removeComponent(helpNote);
}
Label label =
new Label(
"<h4 style='color:red;'>Please upload proteins file first</h4><h4 style='color:red;'>Please upload proteins files in (.txt) format.</h4><h4 style='color:red;'>Upload fraction range file after upload protein fraction file.</h4><h4 style='color:red;'>Upload fraction range file in (.xlsx) format.</h4>");
label.setContentMode(Label.CONTENT_XHTML);
helpNote = help.getHelpNote(label);
helpNote.setMargin(false, true, true, true);
vlo.addComponent(upload);
vlo.addComponent(pi);
vlo.addComponent(helpNote);
vlo.setComponentAlignment(helpNote, Alignment.MIDDLE_RIGHT);
expDetails = new Panel("Experiment Details");
Label labelDetails =
new Label("<h4 style='color:red;'>Please Select Experiment To Show the Details.</h4>");
labelDetails.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(labelDetails);
vlo.addComponent(expDetails);
root.addComponent(vlo);
container.addComponent(root);
}
@UiHandler("getHyperlink")
void getHyperlink(ClickEvent event) {
MultiSelectionModel<SessionDataDto> sessionModel =
(MultiSelectionModel) sessionsDataGrid.getSelectionModel();
MultiSelectionModel<TaskDataDto> testModel =
(MultiSelectionModel) testDataGrid.getSelectionModel();
Set<SessionDataDto> sessions = sessionModel.getSelectedSet();
Set<TaskDataDto> tests = testModel.getSelectedSet();
Set<MetricNameDto> metrics = metricPanel.getSelected();
TaskDataTreeViewModel taskDataTreeViewModel =
(TaskDataTreeViewModel) taskDetailsTree.getTreeViewModel();
Set<PlotNameDto> trends = taskDataTreeViewModel.getSelectionModel().getSelectedSet();
HashSet<String> sessionsIds = new HashSet<String>();
HashSet<TestsMetrics> testsMetricses = new HashSet<TestsMetrics>(tests.size());
HashMap<String, TestsMetrics> map = new HashMap<String, TestsMetrics>(tests.size());
for (SessionDataDto session : sessions) {
sessionsIds.add(session.getSessionId());
}
for (TaskDataDto taskDataDto : tests) {
TestsMetrics testsMetrics =
new TestsMetrics(taskDataDto.getTaskName(), new HashSet<String>(), new HashSet<String>());
testsMetricses.add(testsMetrics);
map.put(taskDataDto.getTaskName(), testsMetrics);
}
for (MetricNameDto metricNameDto : metrics) {
map.get(metricNameDto.getTests().getTaskName()).getMetrics().add(metricNameDto.getName());
}
for (PlotNameDto plotNameDto : trends) {
map.get(plotNameDto.getTest().getTaskName()).getTrends().add(plotNameDto.getPlotName());
}
TrendsPlace newPlace =
new TrendsPlace(
mainTabPanel.getSelectedIndex() == 0
? NameTokens.SUMMARY
: mainTabPanel.getSelectedIndex() == 1 ? NameTokens.TRENDS : NameTokens.METRICS);
newPlace.setSelectedSessionIds(sessionsIds);
newPlace.setSelectedTestsMetrics(testsMetricses);
newPlace.setSessionTrends(sessionPlotPanel.getSelected());
String linkText =
Window.Location.getHost()
+ Window.Location.getPath()
+ Window.Location.getQueryString()
+ "#"
+ new JaggerPlaceHistoryMapper().getToken(newPlace);
linkText = URL.encode(linkText);
// create a dialog for copy link
final DialogBox dialog = new DialogBox(false, true);
dialog.setText("Share link");
dialog.setModal(true);
dialog.setAutoHideEnabled(true);
dialog.setPopupPosition(event.getClientX(), event.getClientY());
final TextArea textArea = new TextArea();
textArea.setText(linkText);
textArea.setWidth("300px");
textArea.setHeight("40px");
// select text
Scheduler.get()
.scheduleDeferred(
new Scheduler.ScheduledCommand() {
@Override
public void execute() {
textArea.setVisible(true);
textArea.setFocus(true);
textArea.selectAll();
}
});
dialog.add(textArea);
dialog.show();
}
private Component buildProfileTab() {
HorizontalLayout root = new HorizontalLayout();
root.setCaption("Profile");
root.setIcon(FontAwesome.USER);
root.setWidth(100.0f, Unit.PERCENTAGE);
root.setSpacing(true);
root.setMargin(true);
root.addStyleName("profile-form");
VerticalLayout pic = new VerticalLayout();
pic.setSizeUndefined();
pic.setSpacing(true);
Image profilePic = new Image(null, new ThemeResource("img/profile-pic-300px.jpg"));
profilePic.setWidth(100.0f, Unit.PIXELS);
pic.addComponent(profilePic);
Button upload =
new Button(
"Change…",
event -> {
Notification.show("Not implemented in this demo");
});
upload.addStyleName(ValoTheme.BUTTON_TINY);
pic.addComponent(upload);
root.addComponent(pic);
FormLayout details = new FormLayout();
details.addStyleName(ValoTheme.FORMLAYOUT_LIGHT);
root.addComponent(details);
root.setExpandRatio(details, 1);
firstNameField = new TextField("First Name");
details.addComponent(firstNameField);
lastNameField = new TextField("Last Name");
details.addComponent(lastNameField);
titleField = new ComboBox("Title");
titleField.setInputPrompt("Please specify");
titleField.addItem("Mr.");
titleField.addItem("Mrs.");
titleField.addItem("Ms.");
titleField.setNewItemsAllowed(true);
details.addComponent(titleField);
sexField = new OptionGroup("Sex");
sexField.addItem(Boolean.FALSE);
sexField.setItemCaption(Boolean.FALSE, "Female");
sexField.addItem(Boolean.TRUE);
sexField.setItemCaption(Boolean.TRUE, "Male");
sexField.addStyleName("horizontal");
details.addComponent(sexField);
Label section = new Label("Contact Info");
section.addStyleName(ValoTheme.LABEL_H4);
section.addStyleName(ValoTheme.LABEL_COLORED);
details.addComponent(section);
emailField = new TextField("Email");
emailField.setWidth("100%");
emailField.setRequired(true);
emailField.setNullRepresentation("");
details.addComponent(emailField);
locationField = new TextField("Location");
locationField.setWidth("100%");
locationField.setNullRepresentation("");
locationField.setComponentError(new UserError("This address doesn't exist"));
details.addComponent(locationField);
phoneField = new TextField("Phone");
phoneField.setWidth("100%");
phoneField.setNullRepresentation("");
details.addComponent(phoneField);
newsletterField = new OptionalSelect<>();
newsletterField.addOption(0, "Daily");
newsletterField.addOption(1, "Weekly");
newsletterField.addOption(2, "Monthly");
details.addComponent(newsletterField);
section = new Label("Additional Info");
section.addStyleName(ValoTheme.LABEL_H4);
section.addStyleName(ValoTheme.LABEL_COLORED);
details.addComponent(section);
websiteField = new TextField("Website");
websiteField.setInputPrompt("http://");
websiteField.setWidth("100%");
websiteField.setNullRepresentation("");
details.addComponent(websiteField);
bioField = new TextArea("Bio");
bioField.setWidth("100%");
bioField.setRows(4);
bioField.setNullRepresentation("");
details.addComponent(bioField);
return root;
}
private void buildWorkSpace() {
mainLayout.addTab(workSpace, "Work Space");
workSpace.setSizeFull();
final TextField className = new TextField("Correlator Class Name");
final TextArea classCode = new TextArea("Correlator Code");
final TextField builderClassName = new TextField("Builder Class Name");
final TextArea builderClassCode = new TextArea("Builder Code");
final CheckBox withBuilder = new CheckBox("Correlator comes with builder?");
withBuilder.setImmediate(true);
withBuilder.addListener(
new Property.ValueChangeListener() {
public void valueChange(Property.ValueChangeEvent event) {
if (withBuilder.booleanValue()) {
builderClassName.setVisible(true);
builderClassCode.setVisible(true);
} else {
builderClassName.setVisible(false);
builderClassCode.setVisible(false);
}
}
});
final Button compile = new Button("Add Correlator");
compile.addListener(
new Button.ClickListener() {
public void buttonClick(Button.ClickEvent event) {
if (!withBuilder.booleanValue()) {
CorrelatorFromCodeFactory.createCorrelator(
(String) helper.getBean("classPath"),
className.getValue().toString(),
classCode.getValue().toString(),
correlatorBuilderManager,
feed,
correlatorPool,
null,
null,
null);
} else {
RuntimeJavaFileCompiler.compile(
(String) helper.getBean("classPath"),
className.getValue().toString(),
classCode.getValue().toString());
CorrelatorBuilderFromCodeFactory.createCorrelatorBuilder(
(String) helper.getBean("classPath"),
builderClassName.getValue().toString(),
builderClassCode.getValue().toString(),
correlatorBuilderManager,
feed,
correlatorPool);
}
}
});
workSpace.addComponent(className);
workSpace.addComponent(classCode);
workSpace.addComponent(withBuilder);
workSpace.addComponent(builderClassName);
workSpace.addComponent(builderClassCode);
builderClassName.setVisible(false);
builderClassCode.setVisible(false);
workSpace.addComponent(compile);
classCode.setWidth("100%");
classCode.setHeight("500px");
builderClassCode.setWidth("100%");
builderClassCode.setHeight("500px");
}
