public IReason updateNeeded(IUpdateContext context) {
// retrieve name from pictogram model
String pictogramName = null;
PictogramElement pictogramElement = context.getPictogramElement();
if (pictogramElement instanceof ContainerShape) {
ContainerShape cs = (ContainerShape) pictogramElement;
for (Shape shape : cs.getChildren()) {
if (shape.getGraphicsAlgorithm() instanceof Text) {
Text text = (Text) shape.getGraphicsAlgorithm();
pictogramName = text.getValue();
}
}
}
// retrieve name from business model
String businessName = null;
Object bo = getBusinessObjectForPictogramElement(pictogramElement);
if (bo instanceof EClass) {
EClass eClass = (EClass) bo;
businessName = eClass.getName();
}
// update needed, if names are different
boolean updateNameNeeded =
((pictogramName == null && businessName != null)
|| (pictogramName != null && !pictogramName.equals(businessName)));
if (updateNameNeeded) {
return Reason.createTrueReason("Name is out of date");
} else {
return Reason.createFalseReason();
}
}
private static List<CoreMap> toTimexCoreMaps(Element docElem, CoreMap originalDocument) {
// --Collect Token Offsets
HashMap<Integer, Integer> beginMap = new HashMap<Integer, Integer>();
HashMap<Integer, Integer> endMap = new HashMap<Integer, Integer>();
boolean haveTokenOffsets = true;
for (CoreMap sent : originalDocument.get(CoreAnnotations.SentencesAnnotation.class)) {
for (CoreLabel token : sent.get(CoreAnnotations.TokensAnnotation.class)) {
Integer tokBegin = token.get(CoreAnnotations.TokenBeginAnnotation.class);
Integer tokEnd = token.get(CoreAnnotations.TokenEndAnnotation.class);
if (tokBegin == null || tokEnd == null) {
haveTokenOffsets = false;
}
int charBegin = token.get(CoreAnnotations.CharacterOffsetBeginAnnotation.class);
int charEnd = token.get(CoreAnnotations.CharacterOffsetEndAnnotation.class);
beginMap.put(charBegin, tokBegin);
endMap.put(charEnd, tokEnd);
}
}
// --Set Timexes
List<CoreMap> timexMaps = new ArrayList<CoreMap>();
int offset = 0;
Element textElem = docElem.getFirstChildElement("text");
for (int i = 0; i < textElem.getChildCount(); i++) {
Node content = textElem.getChild(i);
if (content instanceof Text) {
Text text = (Text) content;
offset += text.getValue().length();
} else if (content instanceof Element) {
Element child = (Element) content;
if (child.getLocalName().equals("TIMEX3")) {
Timex timex = new Timex(child);
if (child.getChildCount() != 1) {
throw new RuntimeException("TIMEX3 should only contain text " + child);
}
String timexText = child.getValue();
CoreMap timexMap = new ArrayCoreMap();
// (timex)
timexMap.set(TimexAnnotation.class, timex);
// (text)
timexMap.set(CoreAnnotations.TextAnnotation.class, timexText);
// (characters)
int charBegin = offset;
timexMap.set(CoreAnnotations.CharacterOffsetBeginAnnotation.class, charBegin);
offset += timexText.length();
int charEnd = offset;
timexMap.set(CoreAnnotations.CharacterOffsetEndAnnotation.class, charEnd);
// (tokens)
if (haveTokenOffsets) {
Integer tokBegin = beginMap.get(charBegin);
int searchStep = 1; // if no exact match, search around the character offset
while (tokBegin == null) {
tokBegin = beginMap.get(charBegin - searchStep);
if (tokBegin == null) {
tokBegin = beginMap.get(charBegin + searchStep);
}
searchStep += 1;
}
searchStep = 1;
Integer tokEnd = endMap.get(charEnd);
while (tokEnd == null) {
tokEnd = endMap.get(charEnd - searchStep);
if (tokEnd == null) {
tokEnd = endMap.get(charEnd + searchStep);
}
searchStep += 1;
}
timexMap.set(CoreAnnotations.TokenBeginAnnotation.class, tokBegin);
timexMap.set(CoreAnnotations.TokenEndAnnotation.class, tokEnd);
}
// (add)
timexMaps.add(timexMap);
} else {
throw new RuntimeException("unexpected element " + child);
}
} else {
throw new RuntimeException("unexpected content " + content);
}
}
return timexMaps;
}
public Funding toFunding() {
Funding result = new Funding();
Amount orcidAmount = new Amount();
if (!PojoUtil.isEmpty(amount)) orcidAmount.setContent(amount.getValue());
if (!PojoUtil.isEmpty(currencyCode)) orcidAmount.setCurrencyCode(currencyCode.getValue());
result.setAmount(orcidAmount);
if (!PojoUtil.isEmpty(description)) result.setDescription(description.getValue());
if (!PojoUtil.isEmpty(startDate)) result.setStartDate(new FuzzyDate(startDate.toFuzzyDate()));
if (!PojoUtil.isEmpty(endDate)) result.setEndDate(new FuzzyDate(endDate.toFuzzyDate()));
if (!PojoUtil.isEmpty(putCode)) result.setPutCode(Long.valueOf(putCode.getValue()));
if (fundingTitle != null) {
result.setTitle(fundingTitle.toFundingTitle());
}
if (!PojoUtil.isEmpty(fundingType))
result.setType(FundingType.fromValue(fundingType.getValue()));
if (organizationDefinedFundingSubType != null
&& !PojoUtil.isEmpty(organizationDefinedFundingSubType.getSubtype()))
result.setOrganizationDefinedType(
new OrganizationDefinedFundingSubType(
organizationDefinedFundingSubType.getSubtype().getValue()));
if (!PojoUtil.isEmpty(url)) result.setUrl(new Url(url.getValue()));
else result.setUrl(new Url(""));
if (visibility != null)
result.setVisibility(
org.orcid.jaxb.model.common_rc2.Visibility.fromValue(visibility.getVisibility().value()));
// Set Organization
Organization organization = new Organization();
if (!PojoUtil.isEmpty(fundingName)) organization.setName(fundingName.getValue());
OrganizationAddress organizationAddress = new OrganizationAddress();
organization.setAddress(organizationAddress);
if (!PojoUtil.isEmpty(city)) organizationAddress.setCity(city.getValue());
if (!PojoUtil.isEmpty(region)) {
organizationAddress.setRegion(region.getValue());
}
if (!PojoUtil.isEmpty(country)) {
organizationAddress.setCountry(Iso3166Country.fromValue(country.getValue()));
}
if (!PojoUtil.isEmpty(disambiguatedFundingSourceId)) {
organization.setDisambiguatedOrganization(new DisambiguatedOrganization());
organization
.getDisambiguatedOrganization()
.setDisambiguatedOrganizationIdentifier(disambiguatedFundingSourceId.getValue());
organization
.getDisambiguatedOrganization()
.setDisambiguationSource(disambiguationSource.getValue());
}
result.setOrganization(organization);
// Set contributors
if (contributors != null && !contributors.isEmpty()) {
FundingContributors fContributors = new FundingContributors();
for (Contributor contributor : contributors) {
if (!PojoUtil.isEmtpy(contributor))
fContributors.getContributor().add(contributor.toFundingContributor());
}
result.setContributors(fContributors);
}
// Set external identifiers
if (externalIdentifiers != null && !externalIdentifiers.isEmpty()) {
FundingExternalIdentifiers fExternalIdentifiers = new FundingExternalIdentifiers();
for (FundingExternalIdentifierForm fExternalIdentifier : externalIdentifiers) {
if (!PojoUtil.isEmtpy(fExternalIdentifier))
fExternalIdentifiers
.getExternalIdentifier()
.add(fExternalIdentifier.toFundingExternalIdentifier());
}
result.setExternalIdentifiers(fExternalIdentifiers);
}
return result;
}
