/** Should be called when processing is done */
public void notifyDone(final long nTotalRecordsProcessed) {
// print out the progress meter
this.nTotalRecordsProcessed = nTotalRecordsProcessed;
this.positionMessage = "done";
printProgress(true);
logger.info(
String.format(
"Total runtime %.2f secs, %.2f min, %.2f hours",
timer.getElapsedTime(), timer.getElapsedTime() / 60, timer.getElapsedTime() / 3600));
if (performanceLog != null) performanceLog.close();
// shutdown our daemon thread
progressMeterDaemon.done();
}
/**
* Creates a new ProgressData object recording a snapshot of our progress at this instant
*
* @param loc our current position. If null, assumes we are done traversing
* @param nTotalRecordsProcessed the total number of records we've processed
* @return
*/
private ProgressMeterData takeProgressSnapshot(
final GenomeLoc loc, final long nTotalRecordsProcessed) {
// null -> end of processing
final long bpProcessed =
loc == null ? targetSizeInBP : regionsBeingProcessed.sizeBeforeLoc(loc);
return new ProgressMeterData(timer.getElapsedTime(), nTotalRecordsProcessed, bpProcessed);
}