protected void commit() {
if (!model.isTableComplete()) {
JOptionPane.showMessageDialog(
this,
"The table is incomplete. You must provide names for all series before continuing");
return;
}
searchDatabaseForMatches();
if (model.areThereMissingEntites(true)) {
Object[] options = {"Yes", "No", "Cancel"};
int n =
JOptionPane.showOptionDialog(
this,
"Some of the entities are not currently in the database. If you continue, "
+ "basic records for these entities will automatically be created.\n\n"
+ "Would you like to proceed?",
"Confirmation",
JOptionPane.YES_NO_CANCEL_OPTION,
JOptionPane.QUESTION_MESSAGE,
null,
options,
options[2]);
if (n == JOptionPane.OK_OPTION) {
model.generateMissingEntities(
this.chkIncludeSubobjects.isSelected(), defaultEntitiesDialog);
} else if (n == JOptionPane.CANCEL_OPTION) {
return;
}
}
// Open the series in an editor if requested
if (chckbxOpenSeriesIn.isSelected()) {
openEditor();
}
containerFrame.setVisible(false);
}
@Override
public void actionPerformed(ActionEvent evt) {
if (evt.getActionCommand().equals("SearchDB")) {
searchDatabaseForMatches();
} else if (evt.getActionCommand().equals("Finish")) {
commit();
} else if (evt.getActionCommand().equals("Cancel")) {
containerFrame.dispose();
} else if (evt.getActionCommand().equals("DefineByPattern")) {
fillTableByPattern();
} else if (evt.getActionCommand().equals("IncludeExcludeSubObjects")) {
table.getColumnExt("SubObjectColumn").setVisible(this.chkIncludeSubobjects.isSelected());
} else if (evt.getActionCommand().equals("SetDefaults")) {
/*MVCArrayList<ControlledVoc> objectdic = Dictionary.getMutableDictionary("objectTypeDictionary");
for(ControlledVoc item : objectdic)
{
if(item.getNormal().equals("Site"))
{
defaultEntitiesDialog.setDefaultValues(item);
}
}*/
defaultEntitiesDialog.setVisible(true);
if (defaultEntitiesDialog == null) {
defaultEntitiesDialog = new DefaultEntityParametersDialog(containerFrame);
}
} else if (evt.getActionCommand().equals("GenerateMissing")) {
if (model.areThereEmptyCells(this.chkIncludeSubobjects.isSelected())) {
Alert.message(
containerFrame,
"Missing entries",
"You must provide titles for all entities in the table.");
return;
}
searchDatabaseForMatches();
if (!model.areThereMissingEntites(true)) {
Alert.message(containerFrame, "Nothing to do", "There are no entities to create!");
return;
}
Object[] options = {"Yes", "No", "Cancel"};
int n =
JOptionPane.showOptionDialog(
this,
"You are about to create basic database entities for all the red crosses in the table.\n"
+ "Are you sure you want to continue?",
"Confirmation",
JOptionPane.YES_NO_CANCEL_OPTION,
JOptionPane.QUESTION_MESSAGE,
null,
options,
options[2]);
if (n == JOptionPane.OK_OPTION) {
model.generateMissingEntities(
this.chkIncludeSubobjects.isSelected(), this.defaultEntitiesDialog);
}
return;
}
}
/** Populate the table using information specified in the regex pattern dialog */
private void fillTableByPattern() {
SeriesIdentityRegexDialog dialog =
new SeriesIdentityRegexDialog(
containerFrame, model.getSeriesIdentity(0), this.chkIncludeSubobjects.isSelected());
dialog.setLocationRelativeTo(containerFrame);
dialog.setVisible(true);
if (dialog.cancelled) return;
for (int i = 0; i < model.getRowCount(); i++) {
SeriesIdentity id = model.getSeriesIdentity(i);
// Object
String orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasObject.class));
MethodOptions method = dialog.getSelectedMethodOption(TridasObject.class);
String pattern = dialog.getPattern(TridasObject.class);
Integer matchNum = dialog.getMatchNum(TridasObject.class, false);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 3);
// Sub-Object
orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasObject.class, true));
method = dialog.getSelectedMethodOption(TridasObject.class, true);
pattern = dialog.getPattern(TridasObject.class, true);
matchNum = dialog.getMatchNum(TridasObject.class, true);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 4);
// Element
orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasElement.class));
method = dialog.getSelectedMethodOption(TridasElement.class);
pattern = dialog.getPattern(TridasElement.class);
matchNum = dialog.getMatchNum(TridasElement.class, true);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 5);
// Sample
orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasSample.class));
method = dialog.getSelectedMethodOption(TridasSample.class);
pattern = dialog.getPattern(TridasSample.class);
matchNum = dialog.getMatchNum(TridasSample.class, true);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 6);
// Radius
orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasRadius.class));
method = dialog.getSelectedMethodOption(TridasRadius.class);
pattern = dialog.getPattern(TridasRadius.class);
matchNum = dialog.getMatchNum(TridasRadius.class, true);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 7);
// Series
orig =
SeriesIdentityRegexDialog.getStringToTest(
id, dialog.getSelectedFieldOption(TridasMeasurementSeries.class));
method = dialog.getSelectedMethodOption(TridasMeasurementSeries.class);
pattern = dialog.getPattern(TridasMeasurementSeries.class);
matchNum = dialog.getMatchNum(TridasMeasurementSeries.class, true);
if (!method.equals(MethodOptions.NONE))
model.setValueAt(
SeriesIdentityRegexDialog.getPatternMatch(orig, method, pattern, matchNum), i, 8);
}
}
/** Open the editor with these series imported */
private void openEditor() {
FullEditor editor = FullEditor.getInstance();
editor.addSamples(model.getAllSamples(this.chkIncludeSubobjects.isSelected()));
}
/** Search the database for entity matches based on the codes specified in the table */
public void searchDatabaseForMatches() {
model.searchForMatches();
}
/**
* Parse the specified legacy data file for series
*
* @param file
* @param fileType
*/
private void parseFile(File file, AbstractDendroFormat format) {
ArrayList<Sample> sampleList = new ArrayList<Sample>();
// Create a reader based on the file type supplied
AbstractDendroFileReader reader = TridasIO.getFileReaderFromFormat(format);
if (reader == null) {
Alert.error(containerFrame, "Error", "Unknown file type");
return;
}
// Try and load the file
try {
reader.loadFile(file.getAbsolutePath());
} catch (IOException e) {
Alert.errorLoading(file.getAbsolutePath(), e);
return;
} catch (InvalidDendroFileException e) {
Alert.error(
containerFrame,
"Error",
"The selected file is not a valid "
+ format.getShortName()
+ " file.\nPlease check and try again");
return;
} catch (NullPointerException e) {
Alert.error(containerFrame, "Invalid File", e.getLocalizedMessage());
}
TridasTridas tc = reader.getTridasContainer();
log.debug("Project count: " + tc.getProjects().size());
Boolean hideWarningsFlag = false;
for (TridasProject p : tc.getProjects()) {
for (TridasObject o : p.getObjects()) {
for (TridasElement e : TridasUtils.getElementList(o)) {
log.debug("Element count: " + o.getElements().size());
for (TridasSample s : e.getSamples()) {
for (TridasRadius r : s.getRadiuses()) {
for (TridasMeasurementSeries ms : r.getMeasurementSeries()) {
Sample sample =
EditorFactory.createSampleFromSeries(ms, e, file, format, hideWarningsFlag);
if (sample == null) {
hideWarningsFlag = true;
} else {
sampleList.add(sample);
}
}
}
}
}
}
for (TridasDerivedSeries ds : p.getDerivedSeries()) {
Sample sample =
EditorFactory.createSampleFromSeries(ds, null, file, format, hideWarningsFlag);
if (sample == null) {
hideWarningsFlag = true;
} else {
sampleList.add(sample);
}
}
}
Boolean unitsSet = false;
for (ITridasSeries ser : getSeries(sampleList)) {
for (TridasValues tv : ser.getValues()) {
if (tv.isSetUnit()) {
if (tv.getUnit().isSetNormalTridas()) {
unitsSet = true;
}
}
}
}
if (unitsSet == false && sampleList.size() > 0 && unitsIfNotSpecified == null) {
Object[] possibilities = {"1/1000th mm", "1/100th mm", "1/50th mm", "1/20th mm", "1/10th mm"};
Object s =
JOptionPane.showInputDialog(
containerFrame,
"One or more series has no units defined.\n" + "Please specify units below:",
"Set Units",
JOptionPane.PLAIN_MESSAGE,
null,
possibilities,
"1/1000th mm");
if (s.equals("1/1000th mm")) {
unitsIfNotSpecified = NormalTridasUnit.MICROMETRES;
} else if (s.equals("1/100th mm")) {
unitsIfNotSpecified = NormalTridasUnit.HUNDREDTH_MM;
} else if (s.equals("1/50th mm")) {
unitsIfNotSpecified = NormalTridasUnit.FIFTIETH_MM;
} else if (s.equals("1/20th mm")) {
unitsIfNotSpecified = NormalTridasUnit.TWENTIETH_MM;
} else if (s.equals("1/10th mm")) {
unitsIfNotSpecified = NormalTridasUnit.TENTH_MM;
} else {
Alert.error(containerFrame, "Error", "Invalid measurement units specified");
return;
}
}
for (Sample sample : sampleList) {
ITridasSeries series = sample.getSeries();
try {
for (int i = 0; i < series.getValues().size(); i++) {
TridasValues tv = series.getValues().get(i);
if (tv.isSetUnit()) {
if (!tv.getUnit().isSetNormalTridas()) {
tv.getUnit().setNormalTridas(unitsIfNotSpecified);
}
} else {
TridasUnit unit = new TridasUnit();
unit.setNormalTridas(unitsIfNotSpecified);
tv.setUnit(unit);
tv.setUnitless(null);
}
tv = UnitUtils.convertTridasValues(NormalTridasUnit.MICROMETRES, tv, true);
TridasUnit unit = new TridasUnit();
unit.setNormalTridas(NormalTridasUnit.MICROMETRES);
tv.setUnit(unit);
series.getValues().set(i, tv);
}
} catch (NumberFormatException e) {
Alert.error("Error", "One or more data values are not numbers.");
return;
} catch (ConversionWarningException e) {
Alert.error("Error", "Error converting units");
return;
}
}
for (Sample s : sampleList) {
SeriesIdentity id = new SeriesIdentity(file, format, s);
model.addItem(id);
}
}
/** Initialize the GUI */
private void init() {
setLayout(new BorderLayout(0, 0));
JPanel panelMain = new JPanel();
add(panelMain, BorderLayout.CENTER);
panelMain.setLayout(new MigLayout("", "[grow]", "[grow]"));
JScrollPane scrollPane = new JScrollPane();
scrollPane.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
scrollPane.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_ALWAYS);
panelMain.add(scrollPane, "cell 0 0,grow");
table =
new JXTable() {
private static final long serialVersionUID = 1L;
public void changeSelection(
final int row, final int column, boolean toggle, boolean extend) {
super.changeSelection(row, column, toggle, extend);
if (table.isCellEditable(row, column)) {
editCellAt(row, column);
}
}
};
table.setHorizontalScrollEnabled(true);
table.setColumnControlVisible(true);
model = new SeriesIdentityTableModel(containerFrame);
SeriesIdentityTableCellRenderer renderer = new SeriesIdentityTableCellRenderer();
table.setModel(model);
table.getColumn(3).setCellRenderer(renderer);
table.getColumn(4).setCellRenderer(renderer);
table.getColumn(5).setCellRenderer(renderer);
table.getColumn(6).setCellRenderer(renderer);
table.getColumn(7).setCellRenderer(renderer);
table.getColumn(8).setCellRenderer(renderer);
table.getColumnExt(4).setIdentifier("SubObjectColumn");
table.getColumnExt("SubObjectColumn").setVisible(false);
table
.getColumnModel()
.addColumnModelListener(
new TableColumnModelListener() {
@Override
public void columnAdded(TableColumnModelEvent arg0) {
chkIncludeSubobjects.setSelected(table.getColumnExt("SubObjectColumn").isVisible());
}
@Override
public void columnMarginChanged(ChangeEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void columnMoved(TableColumnModelEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void columnRemoved(TableColumnModelEvent arg0) {
chkIncludeSubobjects.setSelected(table.getColumnExt("SubObjectColumn").isVisible());
}
@Override
public void columnSelectionChanged(ListSelectionEvent arg0) {
// TODO Auto-generated method stub
}
});
scrollPane.setViewportView(table);
JPanel panelButton = new JPanel();
add(panelButton, BorderLayout.SOUTH);
panelButton.setLayout(new MigLayout("", "[grow][][]", "[grow][grow][][][]"));
model.addTableModelListener(this);
JPanel panel = new JPanel();
panelButton.add(panel, "cell 0 1 1 2,grow");
panel.setLayout(new MigLayout("", "[31px][162px]", "[16px][][]"));
JLabel lblKey = new JLabel("Key:");
panel.add(lblKey, "cell 0 0,alignx left,aligny top");
JLabel lblPresentIn = new JLabel("= Present in database");
lblPresentIn.setFont(new Font("Dialog", Font.PLAIN, 12));
lblPresentIn.setIcon(Builder.getIcon("found.png", 16));
panel.add(lblPresentIn, "flowy,cell 1 0,alignx left,aligny top");
JLabel lblAbsentFrom = new JLabel("= Absent from database");
lblAbsentFrom.setFont(new Font("Dialog", Font.PLAIN, 12));
lblAbsentFrom.setIcon(Builder.getIcon("missing.png", 16));
panel.add(lblAbsentFrom, "cell 1 1,alignx left,aligny top");
JLabel lblNotYet = new JLabel("= Not yet searched");
lblNotYet.setFont(new Font("Dialog", Font.PLAIN, 12));
lblNotYet.setIcon(Builder.getIcon("wait.png", 16));
panel.add(lblNotYet, "cell 1 2,alignx left,aligny top");
JPanel panel_1 = new JPanel();
panelButton.add(panel_1, "cell 1 1 2 2,alignx right,growy");
panel_1.setLayout(new MigLayout("", "[116px,fill]", "[22px][][][]"));
JButton btnSearchDB = new JButton("Search Database");
btnSearchDB.setFont(new Font("Dialog", Font.BOLD, 9));
panel_1.add(btnSearchDB, "cell 0 0,alignx left,aligny top");
btnSearchDB.setActionCommand("SearchDB");
JButton btnDefineByPattern = new JButton("Define names by pattern");
btnDefineByPattern.setFont(new Font("Dialog", Font.BOLD, 9));
panel_1.add(btnDefineByPattern, "cell 0 1,alignx left,aligny top");
btnDefineByPattern.setActionCommand("DefineByPattern");
JButton btnGenerateMissing = new JButton("Generate missing entities");
btnGenerateMissing.setActionCommand("GenerateMissing");
btnGenerateMissing.addActionListener(this);
JButton btnSetDefaults = new JButton("Set default parameters");
btnSetDefaults.setActionCommand("SetDefaults");
btnSetDefaults.addActionListener(this);
btnSetDefaults.setFont(new Font("Dialog", Font.BOLD, 9));
panel_1.add(btnSetDefaults, "cell 0 2");
btnGenerateMissing.setFont(new Font("Dialog", Font.BOLD, 9));
panel_1.add(btnGenerateMissing, "flowy,cell 0 3");
btnDefineByPattern.addActionListener(this);
btnSearchDB.addActionListener(this);
chkIncludeSubobjects = new JCheckBox("Include sub-objects in import");
chkIncludeSubobjects.addActionListener(this);
chkIncludeSubobjects.setActionCommand("IncludeExcludeSubObjects");
panelButton.add(chkIncludeSubobjects, "cell 0 3");
chckbxOpenSeriesIn = new JCheckBox("Open series in editor when finished");
chckbxOpenSeriesIn.setSelected(true);
panelButton.add(chckbxOpenSeriesIn, "cell 0 4");
}
