Ejemplo n.º 1
0
 @Test
 public void testDeepCopy() {
   Sequence copy = sequence.deepCopy();
   assertNotSame(sequence, copy);
   assertEquals(sequence.getLength(), copy.getLength());
   assertEquals(sequence.getMarkups(), copy.getMarkups());
   assertNotSame(sequence.getMarkups(), copy.getMarkups());
   assertEquals(sequence.getMetadata(), copy.getMetadata());
   assertNotSame(sequence.getMetadata(), copy.getMetadata());
   assertEquals(sequence.getMotifs(), copy.getMotifs());
   assertNotSame(sequence.getMotifs(), copy.getMotifs());
   assertEquals(sequence.getOptions().getBaseUrl(), copy.getOptions().getBaseUrl());
   assertNotSame(sequence.getOptions(), copy.getOptions());
   assertEquals(sequence.getRegions(), copy.getRegions());
   assertNotSame(sequence.getRegions(), copy.getRegions());
 }
Ejemplo n.º 2
0
 @Test
 public void testDeserializeFromJsonO14640() throws Exception {
   ObjectMapper objectMapper = new ObjectMapper();
   objectMapper.configure(ACCEPT_SINGLE_VALUE_AS_ARRAY, true);
   TypeFactory typeFactory = objectMapper.getTypeFactory();
   InputStream inputStream = getClass().getResourceAsStream("/O14640.json");
   List<Sequence> sequences =
       objectMapper.readValue(
           inputStream, typeFactory.constructCollectionType(List.class, Sequence.class));
   assertNotNull(sequences);
   assertEquals(1, sequences.size());
   Sequence s = sequences.get(0);
   assertEquals(695, s.getLength());
   assertEquals(5, s.getRegions().size());
   assertEquals(0, s.getMarkups().size());
   assertEquals(7, s.getMotifs().size());
   assertEquals("uniprot", s.getMetadata().get("database"));
 }
Ejemplo n.º 3
0
 @Test
 public void testDeepCopyNullMotifs() {
   sequence.setMotifs(null);
   Sequence copy = sequence.deepCopy();
   assertNull(copy.getMotifs());
 }