public EMAPServiceVO getPOIFromEMAPData(String urlString, EMAPServiceVO vo) {
try {
ReadXML readXML = new ReadXML();
String xmlString = readXML.convertFromURLToString(urlString);
Element xmlElement = readXML.getDocumentElementFromString(xmlString);
vo.setValue(readXML.getStringValueForXMLTag(xmlElement, "gml:pos"));
} catch (Exception e) {
e.printStackTrace();
}
return vo;
}
public static void main(String[] s) {
ReadXML readXML = new ReadXML();
try {
// Step 1 - read xml response string
// String xmlString =
// readXML.convertFromURLToString("http://incf-dev-local.crbs.ucsd.edu:8080/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3");
// System.out.println("XML String is - " + xmlString);
/*
//Step 2 - Create a xml document from the string
Element xmlElement = readXML.getDocumentElementFromString(xmlString);
//Step 3 - Get a value from the xml document
String [] elementValues = readXML.getStringValuesForXMLTag(xmlElement, "ows:Identifier");
for (int i = 0; i < elementValues.length; i++) {
System.out.println("Element Value is - " + elementValues[i]);
}
*/
// String xmlString =
// "http://incf-dev-local.crbs.ucsd.edu/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3";
// String xmlString =
// "http://132.239.131.188:8080/ucsd/atlas?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:sagittal;tolerance=3";
// xmlString =
// "http://132.239.131.188:8080/atlas-central?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsname=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3";
// String xmlString =
// "http://incf-dev-local.crbs.ucsd.edu/aba/atlas?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_AGEA_1.0;x=6600;y=4000;z=5600;filter=maptype:coronal";
String xmlString =
"http://lxbisel.macs.hw.ac.uk:8080/EMAPServiceController?request=Execute&identifier=TransformPOI&dataInputs=inputSRSCode=Mouse_WHS_1.0;targetSRSCode=Mouse_EMAP-T26_1.0;x=12;y=-29;z=-73";
EMAPServiceVO vo = new EMAPServiceVO();
vo = readXML.getPOIFromEMAPData(xmlString, vo);
System.out.println("VO - " + vo.getValue());
/* ArrayList list = new ArrayList();
//list = readXML.getImageData(xmlString);
list = readXML.get2DImageDataList(xmlString, list);
System.out.println("*****************List = "+list.size());
Iterator iterator = list.iterator();
EMAPServiceVO vo = null;
while (iterator.hasNext()) {
vo = (EMAPServiceVO)iterator.next();
System.out.println("*****************URL = "+vo.getWms());
System.out.println("*****************TFW Values = "+vo.getTfwValues());
}
*/
/* ArrayList completeStructureList = new ArrayList();
CentralServiceVO vo = new CentralServiceVO();
// 2a - Call the method from ABA Hub
String abaURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-aba?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(abaURL, completeStructureList);
// 2b - Call the method from UCSD Hub
String ucsdURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(ucsdURL, completeStructureList);
// 2c - Call the method from WHS Hub
String whsURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-whs?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(whsURL, completeStructureList);
Iterator iterator = completeStructureList.iterator();
KeyValueBean keyValue = null;
while (iterator.hasNext()) {
keyValue = (KeyValueBean)iterator.next();
System.out.println("Name = "+keyValue.getKey());
System.out.println("Description = "+keyValue.getValue());
}
*/
} catch (Exception e) {
e.printStackTrace();
}
}
public ArrayList getImageData(String data) {
SAXBuilder builder = new SAXBuilder();
ArrayList list = new ArrayList();
EMAPServiceVO vo = null;
try {
org.jdom.Document document = builder.build(new ByteArrayInputStream(data.getBytes()));
Iterator responseList = document.getRootElement().getChildren().listIterator();
org.jdom.Element root = document.getRootElement();
// root.getChild("wps:ProcessOutputs").getChild("wps:Output").getChild("wps:Data").getChild("wps:ComplexData").getChild("ImagesResponse").getChild("Image2DCollection");
System.out.println("****Data****" + data);
Namespace ns = Namespace.getNamespace("http://www.opengis.net/wps/1.0.0");
// while (responseList.hasNext()) {
org.jdom.Element imageResponseElements =
root.getChild("ProcessOutputs", ns)
.getChild("Output", ns)
.getChild("Data", ns)
.getChild("ComplexData", ns)
.getChild("ImagesResponse")
.getChild("Image2Dcollection");
if (imageResponseElements.getName().equalsIgnoreCase("Image2Dcollection")) {
Iterator image2DIterator = imageResponseElements.getChildren().listIterator();
int z = 0;
while (image2DIterator.hasNext()) {
z = z++;
vo = new EMAPServiceVO();
System.out.println("IMAGE-2DCOUNT: " + z);
org.jdom.Element image2DElement = (org.jdom.Element) image2DIterator.next();
List columns = image2DElement.getChildren();
for (int j = 0; j < columns.size(); j++) {
org.jdom.Element column = (org.jdom.Element) columns.get(j);
if (column.getName().equalsIgnoreCase("imageposition")) {
System.out.println("IMAGEPOSITION-COUNT: " + z);
// System.out.println("IMAGEPOSITION: " + z);
List imagePositionList = column.getChildren();
// System.out.println("ImagePosition List is - "+imagePositionList.size());
for (int x = 0; x < imagePositionList.size(); x++) {
org.jdom.Element imagePositionElements =
(org.jdom.Element) imagePositionList.get(x);
if (imagePositionElements.getName().equalsIgnoreCase("ImagePlanePlacement")) {
// System.out.println("TFW in ImagePlanePlacement: " +
// imagePositionElements.getText());
vo.setTfwValues(imagePositionElements.getText());
}
if (imagePositionElements.getName().equalsIgnoreCase("corners")) {
List cornerList = column.getChild("Corners").getChildren();
// 1st corner
org.jdom.Element corner = (org.jdom.Element) cornerList.get(0);
// System.out.println("Corner::: "+corner.getAttributeValue("position"));
List pointsList = corner.getChildren();
for (int l = 0; l < pointsList.size(); l++) {
org.jdom.Element point = (org.jdom.Element) pointsList.get(l);
// System.out.println("position::: "+point.getChildren().size());
List posList = point.getChildren();
for (int m = 0; m < posList.size(); m++) {
org.jdom.Element pos = (org.jdom.Element) posList.get(m);
vo.setTopLeft(pos.getText());
// System.out.println("::Top Left::: "+vo.getTopLeft());
}
}
// 2nd corner
corner = (org.jdom.Element) cornerList.get(1);
// System.out.println("Corner::: "+corner.getAttributeValue("position"));
pointsList = corner.getChildren();
for (int l = 0; l < pointsList.size(); l++) {
org.jdom.Element point = (org.jdom.Element) pointsList.get(l);
// System.out.println("position::: "+point.getChildren().size());
List posList = point.getChildren();
for (int m = 0; m < posList.size(); m++) {
org.jdom.Element pos = (org.jdom.Element) posList.get(m);
vo.setBottomLeft(pos.getText());
// System.out.println("::Bottom Left::: "+vo.getBottomLeft());
}
}
// 3rd corner
corner = (org.jdom.Element) cornerList.get(2);
// System.out.println("Corner::: "+corner.getAttributeValue("position"));
pointsList = corner.getChildren();
for (int l = 0; l < pointsList.size(); l++) {
org.jdom.Element point = (org.jdom.Element) pointsList.get(l);
// System.out.println("position::: "+point.getChildren().size());
List posList = point.getChildren();
for (int m = 0; m < posList.size(); m++) {
org.jdom.Element pos = (org.jdom.Element) posList.get(m);
vo.setTopRight(pos.getText());
// System.out.println("::Top Right::: "+vo.getTopRight());
}
}
// 4th corner
corner = (org.jdom.Element) cornerList.get(3);
// System.out.println("Corner::: "+corner.getAttributeValue("position"));
pointsList = corner.getChildren();
for (int l = 0; l < pointsList.size(); l++) {
org.jdom.Element point = (org.jdom.Element) pointsList.get(l);
// System.out.println("position::: "+point.getChildren().size());
List posList = point.getChildren();
for (int m = 0; m < posList.size(); m++) {
org.jdom.Element pos = (org.jdom.Element) posList.get(m);
vo.setBottomRight(pos.getText());
// System.out.println("::Bottom Right::: "+vo.getBottomRight());
}
}
// }
}
}
if (column.getName().equalsIgnoreCase("imageplaneequation")) {
vo.setImagePlaneEquation(column.getText());
}
} else if (column.getName().equalsIgnoreCase("imagesource")) {
System.out.println("IMAGESOURCE-COUNT- " + z + column.getText());
vo.setSrsName(column.getAttribute("srsName").getValue());
vo.setWms(column.getText());
// System.out.println("WMS - " + vo.getWms());
}
}
list.add(vo);
}
System.out.println("*** LIST IS: *** " + list.size());
}
// }
} catch (JDOMException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return list;
}
