public final void testCodonToAmino() {
final Map<Protein, SortedSet<String>> map = new TreeMap<>();
for (final DNA c1 : DNA.values()) {
for (final DNA c2 : DNA.values()) {
for (final DNA c3 : DNA.values()) {
final String s = "" + c1 + c2 + c3;
final Protein pr = TranslatedFrame.codonToAmino(c1, c2, c3);
if (c1.ignore() || c2.ignore()) {
assertTrue(s + ":" + pr, pr.ignore());
} else {
final SortedSet<String> set = map.get(pr);
final SortedSet<String> ns;
if (set == null) {
ns = new TreeSet<>();
map.put(pr, ns);
} else {
ns = set;
}
ns.add(s);
}
}
}
}
final StringBuilder sb = new StringBuilder();
for (final Map.Entry<Protein, SortedSet<String>> e : map.entrySet()) {
final Protein pr = e.getKey();
final SortedSet<String> set = e.getValue();
sb.append(pr.threeLetter()).append("/").append(pr.toString()).append(" ");
int i = 0;
for (final String s : set) {
if (i > 0) {
sb.append(", ");
}
sb.append(s);
i++;
}
sb.append(LS);
}
assertEquals(CODON_TABLE, sb.toString());
}
