public int getMaxThreshold(char str) {
int max = 0;
for (BackgroundModel m : models)
if ((m.strand == str || str == '.') && m.getThreshold() > max) max = m.getThreshold();
return max;
}
// Print
public void printThresholds() {
for (BackgroundModel m : models) {
System.out.println(m.modelType + "\t" + m.getThreshold() + "\t" + m.getStrand());
}
}
// Accessor
public int getGenomicModelThreshold(String tType) {
for (BackgroundModel m : models) if (m.isGenomeWide()) return m.getThreshold();
return -1;
}