Beispiel #1
0
  public void readShortMissing() throws Exception {
    Variable v = null;
    assert (null != (v = ncfileRead.findVariable("t4")));
    assert (v.getDataType() == DataType.SHORT);

    // default use of missing_value
    assert (null != (v = dsRead.findVariable("t4")));
    assert v instanceof VariableEnhanced;
    assert v instanceof VariableDS;
    VariableDS vs = (VariableDS) v;
    assert (vs.getDataType() == DataType.SHORT);

    Attribute att = vs.findAttribute(CDM.MISSING_VALUE);
    assert (null != att);
    assert (!att.isArray());
    assert (1 == att.getLength());
    System.out.println("missing_value = " + att.getNumericValue().shortValue());
    assert (((short) -9999) == att.getNumericValue().shortValue());
    assert (DataType.SHORT == att.getDataType());

    assert (vs.hasMissing());
    assert (vs.hasMissingValue());
    assert (vs.isMissing((double) ((short) -9999)));
    assert (vs.isMissingValue((double) ((short) -9999)));

    Array A = vs.read();
    Index ima = A.getIndex();
    int[] shape = A.getShape();
    int i, j;
    for (i = 0; i < shape[0]; i++) {
      for (j = 0; j < shape[1]; j++) {
        assert (A.getFloat(ima.set(i, j)) == (i * 10 + j));
      }
    }

    // turn off missing data
    vs.setMissingDataIsMissing(false);
    assert (vs.getDataType() == DataType.SHORT);

    assert (!vs.hasMissing());
    assert (vs.hasMissingValue());
    assert (!vs.isMissing((double) ((short) -9999)));
    assert (vs.isMissingValue((double) ((short) -9999)));

    vs.setMissingDataIsMissing(true);
    assert (vs.hasMissing());
    assert (vs.isMissing((double) ((short) -9999)));

    System.out.println("**************TestStandardVar Read readShortMissing");
  }
Beispiel #2
0
  public void readByte2Short() throws Exception {
    Variable t2 = null;
    assert (null != (t2 = ncfileRead.findVariable("t2")));
    assert (t2.getDataType() == DataType.BYTE);

    Attribute att = t2.findAttribute(CDM.SCALE_FACTOR);
    assert (null != att);
    assert (!att.isArray());
    assert (1 == att.getLength());
    assert (2 == att.getNumericValue().doubleValue());
    assert (DataType.SHORT == att.getDataType());

    assert (null != (t2 = dsRead.findVariable("t2")));
    assert t2 instanceof VariableEnhanced;
    VariableDS vs = (VariableDS) t2;
    assert (vs.getDataType() == DataType.SHORT) : vs.getDataType();
    assert (!vs.hasMissing());

    Array A = vs.read();
    assert (A.getElementType() == short.class) : A.getElementType();
    Index ima = A.getIndex();
    int[] shape = A.getShape();
    int i, j;
    for (i = 0; i < shape[0]; i++) {
      for (j = 0; j < shape[1]; j++) {
        assert (A.getShort(ima.set(i, j)) == (2 * (i * 10 + j) + 77));
      }
    }
    System.out.println("**************TestStandardVar readByte2Short");
  }
Beispiel #3
0
 /**
  * Convert (in place) all values in the given array that are considered as "missing" to Float.NaN,
  * according to isMissingData(val).
  *
  * @param values input array
  * @return input array, with missing values converted to NaNs.
  */
 public float[] setMissingToNaN(float[] values) {
   if (!vs.hasMissing()) return values;
   final int length = values.length;
   for (int i = 0; i < length; i++) {
     double value = values[i];
     if (vs.isMissing(value)) values[i] = Float.NaN;
   }
   return values;
 }
Beispiel #4
0
  public void readByte() throws Exception {
    Variable v = null;
    assert (null != (v = ncfileRead.findVariable("t3")));
    assert (v.getDataType() == DataType.BYTE);

    assert (null != (v = dsRead.findVariable("t3")));
    assert v instanceof VariableEnhanced;
    assert v instanceof VariableDS;
    VariableDS vs = (VariableDS) v;
    assert (vs.getDataType() == DataType.BYTE);

    Attribute att = vs.findAttribute("_FillValue");
    assert (null != att);
    assert (!att.isArray());
    assert (1 == att.getLength());
    System.out.println("_FillValue = " + att.getNumericValue().byteValue());
    assert (((byte) 255) == att.getNumericValue().byteValue());
    assert (DataType.BYTE == att.getDataType());

    assert (vs.hasMissing());
    assert (vs.hasFillValue());
    assert (vs.isMissing((double) ((byte) 255)));
    assert (vs.isFillValue((double) ((byte) 255)));

    Array A = vs.read();
    assert (A.getElementType() == byte.class) : A.getElementType();
    Index ima = A.getIndex();
    int[] shape = A.getShape();
    int i, j;
    for (i = 0; i < shape[0]; i++) {
      for (j = 0; j < shape[1]; j++) {
        assert (A.getFloat(ima.set(i, j)) == (i * 10 + j));
      }
    }
    System.out.println("**************TestStandardVar ReadByte");
  }
Beispiel #5
0
  public void readShort2FloatMissing() throws Exception {
    Variable v = null;
    assert (null != (v = ncfileRead.findVariable("t5")));
    assert (v.getDataType() == DataType.SHORT);

    // standard convert with missing data
    assert (null != (v = dsRead.findVariable("t5")));
    assert v instanceof VariableEnhanced;
    assert v instanceof VariableDS;
    VariableDS vs = (VariableDS) v;
    assert (vs.getDataType() == DataType.FLOAT);

    assert (vs.hasMissing());
    assert (vs.hasMissingValue());
    double mv = 2 * (-9999) + 77;
    assert (vs.isMissing((double) mv));
    assert (vs.isMissingValue((double) mv));

    Array A = vs.read();
    Index ima = A.getIndex();
    int[] shape = A.getShape();
    int i, j;

    assert (vs.isMissing(A.getFloat(ima.set(0, 0))));

    for (i = 0; i < shape[0]; i++) {
      for (j = 1; j < shape[1]; j++) {
        float val = A.getFloat(ima.set(i, j));
        float want = 2 * (i * 10 + j) + 77;
        if (val != want) System.out.println(i + " " + j + " " + val + " " + want);
        assert (val == want);
      }
    }

    // useNaNs
    vs.setUseNaNs(true);
    assert (vs.getDataType() == DataType.FLOAT);

    assert (vs.hasMissing());
    assert (vs.hasMissingValue());
    double mv2 = 2 * (-9999) + 77;
    assert (vs.isMissing((double) mv2));
    assert (vs.isMissingValue((double) mv2));

    Array A2 = vs.read();
    Index ima2 = A2.getIndex();
    int[] shape2 = A2.getShape();

    double mval = A2.getFloat(ima2.set(0, 0));
    assert vs.isMissing(mval);
    assert Double.isNaN(mval);

    for (i = 0; i < shape2[0]; i++) {
      for (j = 1; j < shape2[1]; j++) {
        float val = A2.getFloat(ima2.set(i, j));
        float want = 2 * (i * 10 + j) + 77;
        if (val != want) System.out.println(i + " " + j + " " + val + " " + want);
        assert (val == want) : val + " != " + want;
      }
    }

    assert (null == vs.findAttribute(CDM.SCALE_FACTOR));
    assert (null == vs.findAttribute("add_offset"));
    assert (null == vs.findAttribute(CDM.MISSING_VALUE));

    System.out.println("**************TestStandardVar Read readShort2FloatMissing");
  }
Beispiel #6
0
 /** true if there may be missing data, see VariableDS.hasMissing() */
 public boolean hasMissingData() {
   return vs.hasMissing();
 }