/**
* Write a ucar.nc2.ft.PointFeatureCollection in CF point format.
*
* @param pfDataset find the first PointFeatureCollection, and write all data from it
* @param fileOut write to this netcdf-3 file
* @return number of records written
* @throws IOException on read/write error, or if no PointFeatureCollection in pfDataset
*/
public static int writePointFeatureCollection(FeatureDatasetPoint pfDataset, String fileOut)
throws IOException {
// extract the PointFeatureCollection
PointFeatureCollection pointFeatureCollection = null;
List<FeatureCollection> featureCollectionList = pfDataset.getPointFeatureCollectionList();
for (FeatureCollection featureCollection : featureCollectionList) {
if (featureCollection instanceof PointFeatureCollection)
pointFeatureCollection = (PointFeatureCollection) featureCollection;
}
if (null == pointFeatureCollection)
throw new IOException("There is no PointFeatureCollection in " + pfDataset.getLocation());
long start = System.currentTimeMillis();
FileOutputStream fos = new FileOutputStream(fileOut);
DataOutputStream out = new DataOutputStream(new BufferedOutputStream(fos, 10000));
WriterCFPointDataset writer = null;
/* LOOK BAD
List<VariableSimpleIF> dataVars = new ArrayList<VariableSimpleIF>();
ucar.nc2.NetcdfFile ncfile = pfDataset.getNetcdfFile();
if ((ncfile == null) || !(ncfile instanceof NetcdfDataset)) {
dataVars.addAll(pfDataset.getDataVariables());
} else {
NetcdfDataset ncd = (NetcdfDataset) ncfile;
for (VariableSimpleIF vs : pfDataset.getDataVariables()) {
if (ncd.findCoordinateAxis(vs.getName()) == null)
dataVars.add(vs);
}
} */
int count = 0;
pointFeatureCollection.resetIteration();
while (pointFeatureCollection.hasNext()) {
PointFeature pointFeature = (PointFeature) pointFeatureCollection.next();
StructureData data = pointFeature.getData();
if (count == 0) {
EarthLocation loc =
pointFeature.getLocation(); // LOOK we dont know this until we see the obs
String altUnits =
Double.isNaN(loc.getAltitude()) ? null : "meters"; // LOOK units may be wrong
writer = new WriterCFPointDataset(out, pfDataset.getGlobalAttributes(), altUnits);
writer.writeHeader(pfDataset.getDataVariables(), -1);
}
writer.writeRecord(pointFeature, data);
count++;
}
writer.finish();
out.flush();
out.close();
long took = System.currentTimeMillis() - start;
System.out.printf(
"Write %d records from %s to %s took %d msecs %n",
count, pfDataset.getLocation(), fileOut, took);
return count;
}
/**
* Constructor
*
* @param stream write to this stream
* @param globalAtts optional list of global attributes (may be null)
* @param altUnits optional altitude units (set to null if no altitude variable)
* @param dataVars the set of data variables: first the double values, then the String values
* @throws IOException if write error
*/
public CFPointObWriter(
DataOutputStream stream,
List<Attribute> globalAtts,
String altUnits,
List<PointObVar> dataVars,
int numrec)
throws IOException {
ncWriter = new WriterCFPointDataset(stream, globalAtts, altUnits);
List<VariableSimpleIF> vars = new ArrayList<VariableSimpleIF>(dataVars.size());
for (PointObVar pvar : dataVars) vars.add(new PointObVarAdapter(pvar));
ncWriter.writeHeader(vars, numrec);
}
/**
* Call this when all done, output is flushed
*
* @throws IOException if write error
*/
public void finish() throws IOException {
ncWriter.finish();
}
/**
* Add one data point to the file
*
* @param lat latitude value in units of degrees_north
* @param lon longitude value in units of degrees_east
* @param alt altitude value in units of altUnits (may be NaN)
* @param time time value as a date
* @param vals list of data values, matching dataVars in the constructor
* @param svals list of String values, matching dataVars in the constructor
* @throws IOException if write error
*/
public void addPoint(double lat, double lon, double alt, Date time, double[] vals, String[] svals)
throws IOException {
ncWriter.writeRecord(lat, lon, alt, time, vals, svals);
}