public OWLOntology getMergedOntology() {
final IRI mergedOntologyIRI =
IRI.create(queryOntology.getOntologyID().getDefaultDocumentIRI() + "-merged");
final OWLOntologyManager mm = controller.getOWLOntologyManager();
if (mm.contains(mergedOntologyIRI)) {
return mm.getOntology(mergedOntologyIRI);
} else {
try {
final OWLOntology mergedOntology = mm.createOntology(mergedOntologyIRI);
mm.setOntologyFormat(mergedOntology, new RDFXMLOntologyFormat());
final String mergedOntologyFileName =
mergedOntologyIRI
.toURI()
.toString()
.substring(mergedOntologyIRI.toURI().toString().lastIndexOf("/") + 1)
+ ".owl";
mm.setOntologyDocumentIRI(
mergedOntology,
IRI.create(
controller.getRuleSpec().getOutputDir().toURI() + "/" + mergedOntologyFileName));
mm.applyChange(
new AddImport(
mergedOntology,
mm.getOWLDataFactory()
.getOWLImportsDeclaration(
queryOntology.getOntologyID().getDefaultDocumentIRI())));
return mergedOntology;
} catch (OWLOntologyCreationException e) {
// TODO Auto-generated catch block
e.printStackTrace();
return null;
}
}
}
private void createEmptyNotesOntology() {
try {
OWLOntologyManager notesOntologyManager = WebProtegeOWLManager.createOWLOntologyManager();
notesOntology = notesOntologyManager.createOntology();
IRI notesOntologyDocumentIRI = IRI.create(notesOntologyDocument);
notesOntologyManager.setOntologyDocumentIRI(notesOntology, notesOntologyDocumentIRI);
notesOntologyDocument.getParentFile().mkdirs();
BinaryOWLOntologyDocumentFormat notesOntologyDocumentFormat =
new BinaryOWLOntologyDocumentFormat();
notesOntologyManager.saveOntology(
notesOntology, notesOntologyDocumentFormat, notesOntologyDocumentIRI);
} catch (OWLOntologyCreationException e) {
throw new RuntimeException(e);
} catch (OWLOntologyStorageException e) {
throw new RuntimeException(e);
}
}