private void getPelletIncrementalClassifierRunTime(String baseOnt, String ontDir)
throws Exception {
System.out.println("Using Pellet Incremental Classifier...");
GregorianCalendar start = new GregorianCalendar();
File ontFile = new File(baseOnt);
IRI documentIRI = IRI.create(ontFile);
OWLOntology baseOntology = OWL.manager.loadOntology(documentIRI);
IncrementalClassifier classifier = new IncrementalClassifier(baseOntology);
classifier.classify();
System.out.println("Logical axioms: " + baseOntology.getLogicalAxiomCount());
System.out.println("Time taken for base ontology (millis): " + Util.getElapsedTime(start));
File ontDirPath = new File(ontDir);
File[] allFiles = ontDirPath.listFiles();
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
addTripsBaseOntologies(manager);
int count = 1;
for (File owlFile : allFiles) {
IRI owlDocumentIRI = IRI.create(owlFile);
OWLOntology ontology = manager.loadOntologyFromOntologyDocument(owlDocumentIRI);
Set<OWLLogicalAxiom> axioms = ontology.getLogicalAxioms();
for (OWLLogicalAxiom axiom : axioms)
OWL.manager.applyChange(new AddAxiom(baseOntology, axiom));
System.out.println("\nLogical axioms: " + baseOntology.getLogicalAxiomCount());
System.out.println(count + " file: " + owlFile.getName());
// System.out.println("" + count + " file: " + owlFile.getName());
// GregorianCalendar start2 = new GregorianCalendar();
classifier.classify();
// System.out.println("Time taken (millis): " +
// Util.getElapsedTime(start2));
manager.removeOntology(ontology);
count++;
}
System.out.println("\nTotal time taken (millis): " + Util.getElapsedTime(start));
}
@Override
public void prepare() throws TaskException {
// load positive and negative deltas via the OWL API
try {
OWLOntology additions = loadFromDisk(ADDITION_SUFFIX);
OWLOntology deletions = loadFromDisk(DELETION_SUFFIX);
applyToReasoner(additions.getLogicalAxioms(), true);
applyToReasoner(deletions.getLogicalAxioms(), false);
measureTime = additions.getLogicalAxiomCount() > 0 && deletions.getLogicalAxiomCount() > 0;
} catch (OWLOntologyCreationException e) {
throw new TaskException(e);
}
}
public void getELKIncrementalRuntime(String baseOnt, String ontDir) throws Exception {
GregorianCalendar start = new GregorianCalendar();
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
IRI documentIRI = IRI.create(new File(baseOnt));
OWLOntology baseOntology = manager.loadOntology(documentIRI);
System.out.println("Logical axioms: " + baseOntology.getLogicalAxiomCount());
// findDataHasValueAxiom(baseOntology.getAxioms(AxiomType.SUBCLASS_OF));
OWLReasonerFactory reasonerFactory = new ElkReasonerFactory();
OWLReasoner reasoner = reasonerFactory.createReasoner(baseOntology);
reasoner.precomputeInferences(InferenceType.CLASS_HIERARCHY);
File[] files = new File(ontDir).listFiles();
int count = 0;
OWLOntologyManager manager2 = OWLManager.createOWLOntologyManager();
addTripsBaseOntologies(manager2);
for (File file : files) {
System.out.println("File name: " + file.getName());
documentIRI = IRI.create(file);
OWLOntology ontology = manager2.loadOntology(documentIRI);
Set<OWLLogicalAxiom> axioms = ontology.getLogicalAxioms();
// findDataHasValueAxiom(ontology.getAxioms(AxiomType.SUBCLASS_OF));
manager.addAxioms(baseOntology, axioms);
reasoner.flush();
System.out.println("Logical axioms: " + baseOntology.getLogicalAxiomCount());
// From the ELK wiki, it seems ABox reasoning will trigger TBox reasoning
reasoner.precomputeInferences(InferenceType.CLASS_ASSERTIONS);
manager2.removeOntology(ontology);
count++;
System.out.println("Done with " + count);
// if(count == 5)
// break;
}
reasoner.dispose();
System.out.println("Time taken (millis): " + Util.getElapsedTime(start));
}
@Test
public void testNamedOntologyToString() throws Exception {
OWLOntologyManager man = Factory.getManager();
IRI ontIRI = IRI("http://owlapi.sourceforge.net/ont");
OWLOntology ont = man.createOntology(ontIRI);
String s = ont.toString();
String expected =
"Ontology("
+ ont.getOntologyID().toString()
+ ") [Axioms: "
+ ont.getAxiomCount()
+ " Logical Axioms: "
+ ont.getLogicalAxiomCount()
+ "]";
assertEquals(expected, s);
}