public KuabaRepository createNewRepository(String url, File destination) {
IRI iri;
if (url == null) iri = IRI.generateDocumentIRI();
else iri = IRI.create(url);
try {
OWLOntology inst = manager.createOntology(iri);
OWLImportsDeclaration imp =
manager.getOWLDataFactory().getOWLImportsDeclaration(IRI.create(ONTOLOGY_URL));
AddImport addi = new AddImport(inst, imp);
manager.applyChange(addi);
KuabaRepository repo = new OwlApiKuabaRepository(inst, manager.getOWLDataFactory());
repoMap.put(inst.getOntologyID().getOntologyIRI(), repo);
fileMap.put(repo, destination);
TemplateGenerator.generateRootQuestion(repo);
if (destination != null) this.save(repo);
return repo;
} catch (OWLOntologyCreationException ex) {
Logger.getLogger(OwlApiFileGateway.class.getName()).log(Level.SEVERE, null, ex);
}
return null;
}
@SuppressWarnings({"unchecked", "rawtypes"})
private OWLReasoner createModuleReasoner() throws OWLOntologyCreationException {
LOG.info("Creating module reasoner for module: " + modelId);
ModuleType mtype = ModuleType.BOT;
OWLOntologyManager m =
OWLManager.createOWLOntologyManager(
aboxOntology.getOWLOntologyManager().getOWLDataFactory());
SyntacticLocalityModuleExtractor sme =
new SyntacticLocalityModuleExtractor(m, aboxOntology, mtype);
Set<OWLEntity> seeds = (Set) aboxOntology.getIndividualsInSignature();
OWLOntology module = sme.extractAsOntology(seeds, IRI.generateDocumentIRI());
OWLReasoner reasoner = reasonerFactory.createReasoner(module);
LOG.info("Done creating module reasoner module: " + modelId);
return reasoner;
}
private void setup() {
try {
ontology = ontologyManager.createOntology(IRI.generateDocumentIRI());
hybridKB = new NoHRHybridKB(new File(System.getenv("XSB_BIN_DIRECTORY")), ontology, profile);
parser = new NoHRRecursiveDescentParser(hybridKB.getVocabulary());
} catch (final IPException e) {
throw new RuntimeException(e);
} catch (final OWLOntologyCreationException e) {
throw new RuntimeException(e);
} catch (final UnsupportedAxiomsException e) {
throw new RuntimeException(e);
} catch (final PrologEngineCreationException e) {
throw new RuntimeException(e);
}
}
public KuabaRepository copy(KuabaRepository kr, String url, File destination) {
IRI iri;
if (url == null) iri = IRI.generateDocumentIRI();
else iri = IRI.create(url);
try {
OWLOntology model = (OWLOntology) kr.getModel();
OWLOntology inst = manager.createOntology(iri);
OntologyMigrator migrator = new OntologyMigrator(manager, model, inst);
migrator.performMigration();
EntityFindAndReplaceURIRenamer renamer =
new EntityFindAndReplaceURIRenamer(
manager,
inst.getSignature(false),
Collections.singleton(inst),
model.getOntologyID().getOntologyIRI().toString(),
iri.toString());
if (renamer.hasErrors()) System.err.println("ERRO durante a cópia - rename");
manager.applyChanges(renamer.getChanges());
KuabaRepository repo = new OwlApiKuabaRepository(inst, manager.getOWLDataFactory());
repoMap.put(inst.getOntologyID().getOntologyIRI(), repo);
fileMap.put(repo, destination);
return repo;
} catch (OWLOntologyCreationException ex) {
System.err.println("ERRO em copy");
Logger.getLogger(OwlApiFileGateway.class.getName()).log(Level.SEVERE, null, ex);
}
return null;
}
