// public static URI getTypeBySubpartType(subpart_type type)
// {
// switch(type)
// {
// case Terminator:return SequenceOntology.TERMINATOR;
// case Primers:return SequenceOntology.PRIMER_BINDING_SITE;
// }
// return SequenceOntology.CDS;
// }
public xmlToSbol(String xml, String sbol) throws IOException {
SBOLDocument document = createDocument(xml);
System.out.println(
"Created a new SBOL document with " + document.getContents().size() + " element(s)");
FileOutputStream fileoutStream = new FileOutputStream(sbol);
SBOLFactory.write(document, fileoutStream);
fileoutStream.close();
}
@Override
public void visit(SBOLDocument doc) {
super.visit(doc);
removeDuplicates(doc.getContents());
}
