public KSTransition deepCopy(KSState sa, KSState sb) {
FunctionTransition ret = makeCopy(sa, sb);
for (Constant c : constants) {
ret.addConstant(c.makeCopy());
}
// TODO shallow copy OK??
ret.setFunctions(funcs);
ret.refTransition = null;
return ret;
}
public FunctionTransition makeCopy(KSState sa, KSState sb) {
FunctionTransition ret = makeLocalCopy();
ret.setEnds(sa, sb);
ret.constants = constants;
ret.funcs = funcs;
ret.assignments = assignments;
FunctionTransition rtr = this;
while (rtr.refTransition != null) {
rtr = rtr.refTransition;
}
ret.refTransition = rtr;
// E.info("copied coded transition from " + hashCode() + " to " + ret.hashCode() + " " +
// rtr.getSysID());
ret.fwdFactor = fwdFactor;
ret.revFactor = revFactor;
copyTemperatureTo(ret);
return ret;
}
// N.B. two copies here: shallow used for expanding out multi-complex chanels, so that we
// end up using the same evaluator object.
// deep is used for derived channels where one is like another but with some parameter changes
// in coded transitions. All copies for non coded transitions are deep
public FunctionTransition makeMultiCopy(KSState sa, KSState sb, double ff, double fr) {
FunctionTransition ret = makeCopy(sa, sb);
ret.applyMultipliers(ff, fr);
return ret;
}